Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46824 * 2 1 4 4 H 1.08999 * 109.47481 * 305.86845 * 3 2 1 5 5 C 1.50701 * 109.47126 * 185.86859 * 3 2 1 6 6 H 1.07996 * 120.00344 * 275.18953 * 5 3 2 7 7 C 1.37884 * 119.99624 * 95.19121 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.64034 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.64416 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 C 1.50704 * 109.47418 * 65.87018 * 3 2 1 14 14 O 1.21335 * 119.99672 * 94.99590 * 13 3 2 15 15 C 1.46553 * 119.99860 * 275.00121 * 13 3 2 16 16 N 1.31885 * 125.89086 * 0.02562 * 15 13 3 17 17 C 1.32867 * 109.08464 * 179.97438 * 16 15 13 18 18 C 1.35834 * 108.38909 * 0.02562 * 17 16 15 19 19 N 1.35219 * 107.20270 * 359.73397 * 18 17 16 20 20 C 1.46501 * 126.45369 * 180.28047 * 19 18 17 21 21 H 1.09002 * 109.46610 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46972 * 60.00530 * 1 2 3 23 23 H 1.08995 * 109.47330 * 300.00007 * 1 2 3 24 24 H 1.09000 * 109.46972 * 119.99470 * 2 1 3 25 25 H 1.08995 * 109.47330 * 239.99993 * 2 1 3 26 26 H 0.97007 * 119.99715 * 180.02562 * 8 7 5 27 27 H 1.08001 * 125.80319 * 179.97438 * 17 16 15 28 28 H 1.08003 * 126.39459 * 179.97438 * 18 17 16 29 29 H 1.09004 * 109.47237 * 270.16755 * 20 19 18 30 30 H 1.09005 * 109.46854 * 30.16134 * 20 19 18 31 31 H 1.09000 * 109.47746 * 150.16168 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5933 1.9858 -0.8328 5 6 3.5399 1.4451 -0.1453 6 1 4.1671 1.3297 0.7263 7 6 4.1116 1.5948 -1.3911 8 7 5.4162 1.5058 -1.5308 9 14 3.0330 1.9240 -2.8802 10 1 2.7624 3.3805 -2.9832 11 1 3.7293 1.4619 -4.1077 12 1 1.7496 1.1914 -2.7336 13 6 1.6597 2.1098 1.2967 14 8 2.4479 2.1372 2.2187 15 6 0.3380 2.7255 1.4439 16 7 -0.6046 2.7628 0.5222 17 6 -1.6638 3.4000 1.0095 18 6 -1.3858 3.7814 2.2833 19 7 -0.1333 3.3562 2.5637 20 6 0.5854 3.5385 3.8273 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 5.8185 1.6115 -2.4071 27 1 -2.5881 3.5842 0.4822 28 1 -2.0440 4.3199 2.9490 29 1 1.1408 4.4760 3.7974 30 1 -0.1284 3.5652 4.6507 31 1 1.2784 2.7101 3.9740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395343221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = 0.284215 kcal Electronic energy + Delta-G solvation = -15429.323048 eV Core-core repulsion = 12904.274691 eV Total energy + Delta-G solvation = -2525.048358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.18445 -40.10047 -36.43106 -34.97689 -34.08600 -30.87321 -29.98446 -28.14676 -25.96859 -24.17903 -22.65544 -21.74884 -19.98259 -19.20403 -17.99607 -17.20784 -16.80692 -16.32566 -15.67650 -15.37286 -14.95482 -14.73353 -14.34974 -14.09180 -13.84300 -13.75800 -13.61203 -13.53781 -12.82504 -12.52077 -11.99938 -11.78227 -11.70416 -11.23392 -11.05564 -10.76929 -10.74406 -10.46560 -9.43071 -8.32342 -6.39076 0.16512 1.36009 1.36931 1.50370 1.57301 1.70588 2.33663 2.37178 2.97908 3.13607 3.78244 3.91836 4.24415 4.29500 4.39226 4.43230 4.49078 4.57644 4.66695 4.71125 4.85239 5.14414 5.25435 5.25980 5.40480 5.49681 5.63195 5.76249 5.96071 6.21364 6.56930 6.70092 7.04833 7.26081 8.84333 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.010171 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.066626 B = 2752.327078 C = 3015.901975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.007 4.007 4 H 0.066 0.934 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.234 1.234 13 C 0.448 3.552 14 O -0.490 6.490 15 C 0.069 3.931 16 N -0.444 5.444 17 C -0.051 4.051 18 C -0.007 4.007 19 N -0.422 5.422 20 C 0.060 3.940 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.269 0.731 27 H 0.207 0.793 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.955 4.583 7.293 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.140 4.140 3 C -0.027 4.027 4 H 0.084 0.916 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.758 3.242 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.157 1.157 13 C 0.326 3.674 14 O -0.364 6.364 15 C -0.183 4.183 16 N -0.167 5.167 17 C -0.206 4.206 18 C -0.147 4.147 19 N -0.102 5.102 20 C -0.081 4.081 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.249 0.751 29 H 0.105 0.895 30 H 0.149 0.851 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.098 4.237 7.060 18.978 hybrid contribution 0.391 0.519 0.108 0.659 sum -16.707 4.756 7.168 18.792 Atomic orbital electron populations 1.21812 0.94165 1.01100 1.02147 1.21536 0.96053 0.95244 1.01138 1.19398 0.95397 0.95335 0.92582 0.91615 1.20987 0.90223 1.50354 0.94138 0.94800 1.25903 0.96210 0.93897 1.01909 1.70046 1.11999 1.51076 1.25138 0.85898 0.80401 0.79771 0.78145 1.19398 1.20523 1.15699 1.22056 0.81465 0.74041 0.89823 1.90385 1.51646 1.51973 1.42391 1.23406 0.99092 1.09640 0.86206 1.70269 1.00858 1.16581 1.28970 1.23211 0.99562 1.03375 0.94406 1.23807 0.86645 1.04050 1.00187 1.45602 1.13532 1.38346 1.12765 1.22504 0.98765 1.04363 0.82441 0.91946 0.92268 0.93482 0.93863 0.92148 0.92196 0.77592 0.75137 0.89544 0.85074 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.66 71.98 0.62 -4.22 16 2 C -0.10 -4.47 5.37 30.59 0.16 -4.31 16 3 C -0.01 -0.36 1.57 -12.28 -0.02 -0.37 16 4 H 0.07 3.27 5.18 -2.39 -0.01 3.26 16 5 C -0.52 -31.55 8.55 25.60 0.22 -31.33 16 6 H 0.03 2.34 7.50 -2.91 -0.02 2.32 16 7 C 0.02 1.12 5.47 84.66 0.46 1.59 16 8 N -0.94 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.94 45.17 26.98 68.60 1.85 47.02 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.23 -10.38 6.82 99.48 0.68 -9.70 16 13 C 0.45 20.99 5.91 27.86 0.16 21.15 16 14 O -0.49 -24.81 14.27 -3.20 -0.05 -24.86 16 15 C 0.07 2.62 6.37 135.88 0.87 3.49 16 16 N -0.44 -15.58 8.96 -189.95 -1.70 -17.28 16 17 C -0.05 -1.24 11.85 83.98 1.00 -0.24 16 18 C -0.01 -0.14 11.53 83.61 0.96 0.82 16 19 N -0.42 -11.88 3.16 -540.24 -1.71 -13.58 16 20 C 0.06 1.33 10.62 127.77 1.36 2.69 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 23 H 0.05 1.69 5.51 -2.39 -0.01 1.68 16 24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 27 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 2.22 6.35 -2.39 -0.02 2.20 16 Total: -1.00 -77.45 261.99 5.59 -71.86 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.10 Total: 7.87 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.80 Total: -10.74 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.11 Total: -91.17 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.85 Total: 47.02 kcal Total: -77.45 5.59 -71.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395343221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.149 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds