Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47554 * 42.95749 * 3 2 1 5 5 C 1.37098 * 119.99960 * 269.99675 * 4 3 2 6 6 H 1.08006 * 119.99384 * 139.44544 * 5 4 3 7 7 C 1.38949 * 119.99932 * 319.44945 * 5 4 3 8 8 N 1.31414 * 119.99428 * 157.83296 * 7 5 4 9 9 Si 1.86797 * 120.00266 * 337.82700 * 7 5 4 10 10 H 1.48506 * 109.46819 * 94.34707 * 9 7 5 11 11 H 1.48494 * 109.47197 * 214.34856 * 9 7 5 12 12 H 1.48504 * 109.47006 * 334.35193 * 9 7 5 13 13 C 1.34776 * 119.99874 * 89.99557 * 4 3 2 14 14 O 1.21293 * 120.00169 * 4.75182 * 13 4 3 15 15 C 1.50697 * 120.00018 * 184.75022 * 13 4 3 16 16 H 1.09001 * 109.47183 * 325.98466 * 15 13 4 17 17 N 1.46901 * 109.47371 * 205.98644 * 15 13 4 18 18 C 1.53003 * 109.47293 * 85.98603 * 15 13 4 19 19 C 1.52995 * 117.52018 * 116.58556 * 18 15 13 20 20 C 1.52997 * 117.49987 * 185.21731 * 18 15 13 21 21 H 4.40644 * 5.51492 * 180.02562 * 4 1 2 22 22 H 1.09005 * 109.47670 * 282.95595 * 3 2 1 23 23 H 1.09006 * 109.47031 * 162.95656 * 3 2 1 24 24 H 0.97000 * 119.99298 * 180.02562 * 8 7 5 25 25 H 1.00895 * 110.99898 * 299.99945 * 17 15 13 26 26 H 1.00898 * 111.00003 * 63.95050 * 17 15 13 27 27 H 1.09003 * 115.54570 * 330.88768 * 18 15 13 28 28 H 1.08993 * 117.49990 * 214.97496 * 19 18 15 29 29 H 1.09004 * 117.49454 * 359.97438 * 19 18 15 30 30 H 1.08999 * 117.49881 * 359.97438 * 20 18 15 31 31 H 1.09001 * 117.49708 * 144.99465 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0100 -0.9412 5 6 3.3640 -2.2919 -0.5127 6 1 3.0862 -3.1279 -1.1376 7 6 3.9535 -2.5156 0.7255 8 7 3.7893 -3.6695 1.3325 9 14 4.9795 -1.1762 1.5272 10 1 4.1282 -0.3894 2.4554 11 1 6.0969 -1.7950 2.2844 12 1 5.5288 -0.2792 0.4788 13 6 3.3592 -0.6794 -2.2284 14 8 3.2395 0.4726 -2.5885 15 6 3.7589 -1.7412 -3.2203 16 1 4.3758 -2.4895 -2.7227 17 7 4.5222 -1.1266 -4.3147 18 6 2.5040 -2.4090 -3.7861 19 6 2.2367 -2.2566 -5.2848 20 6 2.7002 -3.6023 -4.7233 21 1 -1.0499 -0.0001 -0.0004 22 1 3.0094 -0.2296 1.0015 23 1 3.0088 0.9834 -0.3012 24 1 4.2005 -3.8255 2.1971 25 1 3.9716 -0.4287 -4.7921 26 1 5.3880 -0.7345 -3.9760 27 1 1.6411 -2.4285 -3.1203 28 1 1.1980 -2.1758 -5.6050 29 1 2.9547 -1.6801 -5.8680 30 1 3.7234 -3.9113 -4.9373 31 1 1.9664 -4.4068 -4.6742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399165625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = 39.720956 kcal Electronic energy + Delta-G solvation = -15367.206658 eV Core-core repulsion = 12843.868405 eV Total energy + Delta-G solvation = -2523.338252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12484 -38.44094 -37.11538 -34.55596 -33.79364 -33.43496 -29.30601 -27.41074 -26.16823 -23.17049 -21.96499 -20.62251 -20.07882 -18.65026 -18.02079 -17.61810 -17.10728 -16.49555 -15.75040 -15.44567 -15.15228 -14.87186 -14.59762 -14.33953 -13.89590 -13.49068 -12.93526 -12.73078 -12.26419 -12.17257 -12.03114 -11.66531 -11.45456 -11.22506 -11.08237 -10.97702 -10.73146 -9.96287 -9.61890 -8.57005 -6.22247 1.13955 1.27416 1.38300 1.53673 1.80480 1.86865 2.13383 2.72668 2.88726 3.04926 3.53358 3.61875 3.87872 4.03822 4.15232 4.23538 4.30182 4.48625 4.62324 4.84053 4.88710 5.01054 5.05601 5.30666 5.33796 5.41272 5.97829 6.08650 6.15184 6.47877 6.64699 6.87200 7.28425 7.64076 8.56410 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.011417 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.671117 B = 2451.955740 C = 2763.616950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.232 4.232 3 C 0.193 3.807 4 N -0.464 5.464 5 C -0.347 4.347 6 H 0.087 0.913 7 C 0.036 3.964 8 N -0.886 5.886 9 Si 0.916 3.084 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.264 1.264 13 C 0.454 3.546 14 O -0.617 6.617 15 C 0.126 3.874 16 H 0.099 0.901 17 N -0.808 5.808 18 C -0.162 4.162 19 C -0.157 4.157 20 C -0.151 4.151 21 H 0.259 0.741 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.282 0.718 25 H 0.346 0.654 26 H 0.343 0.657 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 2.882 -5.960 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.233 4.233 3 C 0.071 3.929 4 N -0.184 5.184 5 C -0.474 4.474 6 H 0.105 0.895 7 C -0.170 4.170 8 N -0.521 5.521 9 Si 0.741 3.259 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.188 1.188 13 C 0.243 3.757 14 O -0.503 6.503 15 C 0.010 3.990 16 H 0.117 0.883 17 N -0.337 5.337 18 C -0.181 4.181 19 C -0.194 4.194 20 C -0.188 4.188 21 H 0.275 0.725 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.092 0.908 25 H 0.160 0.840 26 H 0.156 0.844 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.566 2.560 -6.280 6.960 hybrid contribution 0.153 1.185 1.584 1.984 sum -1.412 3.745 -4.696 6.171 Atomic orbital electron populations 1.25710 0.96519 0.99113 0.98825 1.23876 0.95530 1.01790 1.02127 1.18638 0.85288 0.94202 0.94742 1.43865 1.56884 1.09793 1.07909 1.18931 1.41717 0.82093 1.04664 0.89495 1.25867 0.96404 0.98062 0.96643 1.69833 1.40781 1.26043 1.15492 0.86281 0.79888 0.80304 0.79426 1.18615 1.20106 1.18800 1.22374 0.78451 0.90345 0.84532 1.90507 1.57872 1.22048 1.79834 1.20664 0.95420 0.94030 0.88839 0.88277 1.59342 1.08408 1.39795 1.26180 1.21844 0.97216 1.05158 0.93921 1.22999 1.02409 1.00288 0.93730 1.22910 1.03079 0.91154 1.01648 0.72536 0.89812 0.88993 0.90820 0.83999 0.84432 0.90251 0.88354 0.87063 0.88105 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.58 19.25 74.32 1.43 -5.15 16 2 C -0.23 -10.07 13.67 31.13 0.43 -9.64 16 3 C 0.19 8.88 4.74 84.57 0.40 9.28 16 4 N -0.46 -22.49 2.07 -645.40 -1.34 -23.83 16 5 C -0.35 -18.00 8.57 84.04 0.72 -17.28 16 6 H 0.09 4.80 7.14 -2.91 -0.02 4.78 16 7 C 0.04 1.87 5.29 84.93 0.45 2.32 16 8 N -0.89 -48.26 13.96 21.66 0.30 -47.96 16 9 Si 0.92 40.56 25.23 68.60 1.73 42.29 16 10 H -0.26 -10.94 6.65 99.48 0.66 -10.28 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.45 20.90 6.77 87.66 0.59 21.50 16 14 O -0.62 -30.10 15.86 -3.07 -0.05 -30.15 16 15 C 0.13 4.90 2.71 44.17 0.12 5.02 16 16 H 0.10 4.18 6.90 -2.39 -0.02 4.17 16 17 N -0.81 -26.35 7.95 -171.80 -1.37 -27.71 16 18 C -0.16 -5.80 5.45 -10.80 -0.06 -5.86 16 19 C -0.16 -4.46 9.66 30.59 0.30 -4.16 16 20 C -0.15 -4.39 10.23 30.59 0.31 -4.08 16 21 H 0.26 6.21 7.80 -4.42 -0.03 6.17 16 22 H 0.08 3.83 3.64 -2.38 -0.01 3.82 16 23 H 0.09 4.10 7.36 -2.38 -0.02 4.08 16 24 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.35 11.10 7.32 -89.70 -0.66 10.44 16 26 H 0.34 10.78 9.06 -89.70 -0.81 9.96 16 27 H 0.08 3.22 8.07 -2.39 -0.02 3.20 16 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.11 3.01 6.37 -2.38 -0.02 2.99 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -60.44 268.67 3.61 -56.83 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.36 Total: 38.58 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.69 Total: -8.05 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -2.40 Total: -99.50 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.73 Total: 42.29 kcal Total: -60.44 3.61 -56.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399165625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.550 kcal (2) G-P(sol) polarization free energy of solvation -60.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds