Wall clock time and date at job start Mon Mar 30 2020 03:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48498 * 109.47030 * 269.99945 * 3 2 1 5 5 H 1.48496 * 109.47074 * 29.99607 * 3 2 1 6 6 H 1.48501 * 109.47186 * 149.99806 * 3 2 1 7 7 C 1.37877 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99938 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47186 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.46968 * 110.99758 * 169.99877 * 11 10 9 13 13 C 1.53368 * 109.83267 * 53.24286 * 12 11 10 14 14 N 1.46736 * 108.24637 * 50.16484 * 13 12 11 15 15 N 1.28028 * 128.73821 * 163.02411 * 14 13 12 16 16 N 1.28945 * 110.08472 * 180.12585 * 15 14 13 17 17 C 1.34120 * 108.96329 * 0.22171 * 16 15 14 18 18 C 1.34282 * 106.22010 * 359.79649 * 17 16 15 19 19 C 1.47423 * 111.00238 * 294.05431 * 11 10 9 20 20 H 0.97002 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47009 * 60.00116 * 9 7 2 22 22 H 1.08996 * 109.47420 * 300.00034 * 9 7 2 23 23 H 1.09002 * 109.47033 * 60.00154 * 10 9 7 24 24 H 1.08996 * 109.46987 * 300.00322 * 10 9 7 25 25 H 1.09004 * 109.41339 * 293.13333 * 12 11 10 26 26 H 1.09002 * 109.35526 * 173.31907 * 12 11 10 27 27 H 1.09000 * 109.70835 * 290.48212 * 13 12 11 28 28 H 1.09000 * 109.74726 * 169.87256 * 13 12 11 29 29 H 1.08008 * 126.89071 * 179.75442 * 17 16 15 30 30 H 1.09005 * 109.75392 * 45.23439 * 19 11 10 31 31 H 1.09003 * 109.75362 * 165.92664 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0023 11 7 5.4906 -2.6365 0.0022 12 6 6.0173 -3.9875 0.2416 13 6 5.3977 -4.9722 -0.7578 14 7 5.5424 -4.4107 -2.1057 15 7 5.4417 -5.0039 -3.2358 16 7 5.6389 -4.1654 -4.1952 17 6 5.8875 -2.9555 -3.6725 18 6 5.8262 -3.1032 -2.3392 19 6 6.0189 -2.0765 -1.2550 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8753 -0.6804 -0.8888 23 1 3.6586 -3.1510 -0.8875 24 1 3.6579 -3.1498 0.8924 25 1 5.7701 -4.2981 1.2568 26 1 7.1004 -3.9800 0.1187 27 1 4.3412 -5.1118 -0.5293 28 1 5.9158 -5.9295 -0.7009 29 1 6.0961 -2.0452 -4.2150 30 1 5.4765 -1.1659 -1.5094 31 1 7.0799 -1.8538 -1.1419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594018890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:10 Heat of formation + Delta-G solvation = 109.626035 kcal Electronic energy + Delta-G solvation = -15334.957308 eV Core-core repulsion = 12846.943118 eV Total energy + Delta-G solvation = -2488.014189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.33108 -38.54050 -34.29196 -33.05860 -31.60351 -30.69150 -29.17056 -26.00778 -24.71702 -22.89554 -22.42585 -21.05811 -18.82932 -17.38711 -16.85035 -16.66989 -15.45402 -14.96842 -14.73582 -14.23360 -14.04460 -13.78004 -13.21726 -12.73404 -12.49796 -11.97070 -11.77384 -11.57177 -11.42026 -11.04355 -10.83601 -10.15286 -10.07410 -9.92410 -9.86313 -9.32633 -8.97582 -8.60356 -8.39333 -6.11573 -4.11285 1.71543 2.37140 2.70542 3.26498 3.34573 3.37656 3.90002 4.19643 4.38936 4.62069 4.66879 4.74495 5.03661 5.20761 5.25030 5.31544 5.47658 5.49917 5.65732 5.85506 5.95329 6.02021 6.28221 6.52209 6.67506 6.83394 6.93826 7.25726 7.36243 7.70726 8.42847 8.63286 8.90838 9.49612 11.01634 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.034859 B = 0.008045 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.032145 B = 3479.696946 C = 3637.653968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.069 0.931 9 C -0.005 4.005 10 C 0.062 3.938 11 N -0.533 5.533 12 C 0.041 3.959 13 C 0.075 3.925 14 N -0.284 5.284 15 N -0.087 5.087 16 N -0.278 5.278 17 C -0.044 4.044 18 C -0.044 4.044 19 C 0.119 3.881 20 H 0.264 0.736 21 H 0.028 0.972 22 H 0.012 0.988 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.190 0.810 30 H 0.114 0.886 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.135 -5.564 0.255 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.087 0.913 9 C -0.043 4.043 10 C -0.064 4.064 11 N -0.254 5.254 12 C -0.089 4.089 13 C -0.048 4.048 14 N -0.080 5.080 15 N -0.067 5.067 16 N -0.144 5.144 17 C -0.200 4.200 18 C -0.177 4.177 19 C -0.011 4.011 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.207 0.793 30 H 0.132 0.868 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.837 -6.525 -0.043 15.299 hybrid contribution 0.083 1.233 -0.126 1.242 sum 13.921 -5.292 -0.169 14.894 Atomic orbital electron populations 1.69909 1.06366 1.27064 1.50584 1.24999 0.94732 0.99235 0.94305 0.86771 0.80515 0.83439 0.78593 1.20241 1.21314 1.18651 1.21000 0.89186 0.94549 1.51660 0.91254 1.19574 0.96762 0.91049 0.96900 1.22307 0.82604 1.01401 1.00132 1.62548 1.11164 1.19263 1.32390 1.22690 1.00187 0.87354 0.98675 1.23033 1.05110 0.99861 0.76748 1.47321 1.45376 1.07230 1.08069 1.78065 1.19856 1.22041 0.86696 1.75278 1.16440 1.00058 1.22641 1.23044 1.07469 0.98286 0.91223 1.23010 1.08031 0.88112 0.98575 1.21201 1.01961 0.94964 0.83015 0.92599 0.95374 0.96967 0.95289 0.90732 0.87333 0.89707 0.87805 0.87548 0.79347 0.86805 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.53 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.12 4.00 -27.88 -0.11 -0.23 16 10 C 0.06 1.13 3.96 -3.82 -0.02 1.11 16 11 N -0.53 -7.67 4.97 -235.40 -1.17 -8.84 16 12 C 0.04 0.43 5.93 -3.60 -0.02 0.41 16 13 C 0.08 0.87 6.53 -3.72 -0.02 0.84 16 14 N -0.28 -4.34 3.55 -56.89 -0.20 -4.54 16 15 N -0.09 -1.54 13.26 60.35 0.80 -0.74 16 16 N -0.28 -4.98 12.43 30.10 0.37 -4.61 16 17 C -0.04 -0.67 12.03 -17.95 -0.22 -0.89 16 18 C -0.04 -0.66 5.95 -82.29 -0.49 -1.15 16 19 C 0.12 1.61 6.06 -4.76 -0.03 1.58 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 22 H 0.01 0.27 5.73 -51.93 -0.30 -0.03 16 23 H 0.03 0.57 6.27 -51.93 -0.33 0.25 16 24 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 25 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.10 1.25 7.19 -51.93 -0.37 0.87 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.19 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.11 1.67 5.99 -51.93 -0.31 1.36 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 253.28 15.07 3.82 3.82 Total: -1.00 -32.92 253.28 -5.41 -38.33 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.80 Total: -1.84 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.34 Total: -11.33 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.57 Total: -45.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.92 -5.41 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594018890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.960 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds