Wall clock time and date at job start Mon Mar 30 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00295 * 2 1 4 4 C 1.52995 * 109.47091 * 125.00188 * 3 2 1 5 5 C 1.50698 * 109.47182 * 180.02562 * 4 3 2 6 6 N 1.29948 * 126.28460 * 270.02437 * 5 4 3 7 7 O 1.21306 * 110.24775 * 179.68067 * 6 5 4 8 8 C 1.33638 * 109.81374 * 0.47004 * 7 6 5 9 9 C 1.50701 * 126.55255 * 179.80051 * 8 7 6 10 10 H 1.08997 * 109.46833 * 179.68836 * 9 8 7 11 11 C 1.52999 * 109.47137 * 59.68865 * 9 8 7 12 12 C 1.50700 * 109.47013 * 299.68568 * 9 8 7 13 13 H 1.08002 * 120.00097 * 5.38245 * 12 9 8 14 14 C 1.37877 * 120.00320 * 185.37079 * 12 9 8 15 15 N 1.31506 * 120.00346 * 185.16777 * 14 12 9 16 16 Si 1.86800 * 119.99683 * 5.17502 * 14 12 9 17 17 H 1.48501 * 109.46897 * 269.99422 * 16 14 12 18 18 H 1.48498 * 109.47324 * 149.99475 * 16 14 12 19 19 H 1.48502 * 109.47203 * 29.99379 * 16 14 12 20 20 N 1.31136 * 106.89687 * 359.53908 * 8 7 6 21 21 H 1.07993 * 119.99694 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99808 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00141 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46655 * 5.00314 * 3 2 1 25 25 H 1.08993 * 109.47200 * 245.00619 * 3 2 1 26 26 H 1.08998 * 109.47268 * 60.00502 * 4 3 2 27 27 H 1.09007 * 109.47212 * 300.00247 * 4 3 2 28 28 H 1.09002 * 109.46645 * 294.96868 * 11 9 8 29 29 H 1.08999 * 109.47259 * 54.96982 * 11 9 8 30 30 H 1.08996 * 109.46887 * 174.97101 * 11 9 8 31 31 H 0.97001 * 120.00396 * 354.99984 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7883 2.6383 1.1819 6 7 4.9156 2.8759 0.5808 7 8 5.2574 4.0246 0.7683 8 6 4.3583 4.6448 1.5383 9 6 4.4126 6.0762 2.0065 10 1 3.5348 6.2929 2.6152 11 6 4.4352 7.0089 0.7938 12 6 5.6583 6.2893 2.8274 13 1 6.3852 5.4961 2.9215 14 6 5.8701 7.4969 3.4582 15 7 7.0019 7.7193 4.0897 16 14 4.5491 8.8170 3.4159 17 1 4.7539 9.6843 2.2280 18 1 4.6316 9.6396 4.6495 19 1 3.2116 8.1766 3.3366 20 7 3.4169 3.7714 1.8041 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 3.7401 0.5065 1.0919 27 1 2.4773 1.2355 2.1130 28 1 5.3573 6.8540 0.2336 29 1 3.5801 6.7928 0.1533 30 1 4.3843 8.0442 1.1308 31 1 7.6579 7.0097 4.1742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:10 Heat of formation + Delta-G solvation = 45.976512 kcal Electronic energy + Delta-G solvation = -14622.320232 eV Core-core repulsion = 12099.253241 eV Total energy + Delta-G solvation = -2523.066991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.50215 -37.72371 -37.12349 -35.88465 -34.13683 -32.42207 -30.94249 -26.96514 -25.94185 -25.30408 -23.61137 -21.39821 -20.73003 -19.75666 -18.89751 -18.17604 -16.88471 -16.29208 -15.69177 -15.48436 -14.98297 -14.71238 -14.40402 -13.81086 -13.65679 -13.57772 -13.33650 -13.14684 -12.47965 -12.42281 -12.21955 -12.00782 -11.92437 -11.78353 -11.57701 -11.13568 -10.77197 -10.70652 -10.25768 -8.84455 -6.54390 0.17839 1.20154 1.42775 1.49590 1.60355 1.75169 1.97254 2.47940 2.69776 3.01692 3.11443 3.88551 3.94546 4.14325 4.23289 4.41655 4.43096 4.48725 4.53801 4.72831 4.82973 4.89944 4.97963 5.00587 5.04795 5.11137 5.40630 5.62896 5.72626 5.87358 5.90452 6.37265 7.17584 7.26887 8.56260 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.049811 B = 0.006025 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.992697 B = 4646.345120 C = 4869.079241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C -0.081 4.081 4 C -0.018 4.018 5 C 0.168 3.832 6 N -0.419 5.419 7 O 0.048 5.952 8 C 0.235 3.765 9 C 0.092 3.908 10 H 0.083 0.917 11 C -0.145 4.145 12 C -0.604 4.604 13 H 0.017 0.983 14 C -0.009 4.009 15 N -0.931 5.931 16 Si 1.087 2.913 17 H -0.249 1.249 18 H -0.290 1.290 19 H -0.242 1.242 20 N -0.520 5.520 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.126 0.874 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 -9.630 -8.064 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C -0.119 4.119 4 C -0.056 4.056 5 C -0.105 4.105 6 N -0.135 5.135 7 O -0.002 6.002 8 C 0.016 3.984 9 C 0.071 3.929 10 H 0.100 0.900 11 C -0.203 4.203 12 C -0.642 4.642 13 H 0.035 0.965 14 C -0.208 4.208 15 N -0.566 5.566 16 Si 0.907 3.093 17 H -0.174 1.174 18 H -0.217 1.217 19 H -0.166 1.166 20 N -0.255 5.255 21 H 0.135 0.865 22 H 0.113 0.887 23 H 0.144 0.856 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.065 -8.822 -7.908 17.637 hybrid contribution 1.349 -1.591 -0.041 2.086 sum -11.716 -10.413 -7.949 17.575 Atomic orbital electron populations 1.24081 0.95783 1.02788 0.99579 1.22863 0.96256 0.97490 1.01197 1.20620 0.97372 0.97186 0.96767 1.20089 0.96989 0.86710 1.01840 1.26586 0.91469 0.98534 0.93916 1.74538 1.17160 0.96763 1.25018 1.85236 1.44446 1.17350 1.53131 1.29494 0.82143 0.99541 0.87191 1.18206 0.99559 0.79580 0.95564 0.89957 1.22086 1.01918 0.99400 0.96882 1.21927 1.05480 1.02149 1.34660 0.96473 1.27344 1.00595 1.01430 0.91445 1.70939 1.07779 1.34989 1.42849 0.83550 0.74047 0.73863 0.77887 1.17386 1.21695 1.16584 1.71955 1.27584 1.00677 1.25290 0.86545 0.88689 0.85582 0.91677 0.91264 0.87662 0.87804 0.92567 0.91411 0.91197 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 67.78 0.97 -1.84 16 2 C -0.16 -2.70 9.52 25.65 0.24 -2.45 16 3 C -0.08 -1.78 5.64 29.85 0.17 -1.61 16 4 C -0.02 -0.45 5.82 29.85 0.17 -0.28 16 5 C 0.17 6.23 7.47 138.46 1.03 7.26 16 6 N -0.42 -17.27 12.16 -60.30 -0.73 -18.01 16 7 O 0.05 2.18 11.31 74.87 0.85 3.02 16 8 C 0.24 10.55 6.96 88.38 0.62 11.17 16 9 C 0.09 4.17 2.35 -12.29 -0.03 4.14 16 10 H 0.08 3.61 6.65 -2.39 -0.02 3.60 16 11 C -0.14 -5.54 8.76 71.98 0.63 -4.90 16 12 C -0.60 -33.36 8.90 25.60 0.23 -33.14 16 13 H 0.02 1.06 7.97 -2.91 -0.02 1.04 16 14 C -0.01 -0.52 5.43 84.66 0.46 -0.06 16 15 N -0.93 -56.56 13.69 21.45 0.29 -56.26 16 16 Si 1.09 45.77 25.29 68.60 1.73 47.51 16 17 H -0.25 -9.34 6.81 99.48 0.68 -8.67 16 18 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.24 -8.88 6.36 99.48 0.63 -8.24 16 20 N -0.52 -21.79 11.55 -303.18 -3.50 -25.30 16 21 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 22 H 0.09 1.48 7.84 -2.91 -0.02 1.45 16 23 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 24 H 0.06 1.53 7.79 -2.39 -0.02 1.52 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.54 4.40 -2.39 -0.01 2.53 16 31 H 0.25 15.80 8.72 -92.71 -0.81 14.99 16 Total: -1.00 -64.76 269.65 4.11 -60.65 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.97 Total: 10.10 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.50 Total: -21.71 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.94 Total: -99.57 kcal Atomic # 8 Polarization: 2.18 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.73 Total: 47.51 kcal Total: -64.76 4.11 -60.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.623 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds