Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50690 * 120.00260 * 2 1 4 4 C 1.53001 * 109.47428 * 125.00163 * 3 2 1 5 5 C 1.50704 * 109.47297 * 180.02562 * 4 3 2 6 6 N 1.29943 * 126.28668 * 89.97423 * 5 4 3 7 7 O 1.21296 * 110.24825 * 179.97438 * 6 5 4 8 8 C 1.33648 * 109.81586 * 0.02562 * 7 6 5 9 9 C 1.50698 * 126.55279 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46875 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47178 * 300.02095 * 9 8 7 12 12 C 1.50697 * 109.46993 * 60.02267 * 9 8 7 13 13 H 1.07991 * 120.00449 * 359.72131 * 12 9 8 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 N 1.31130 * 106.89171 * 0.22240 * 8 7 6 21 21 H 1.08001 * 120.00712 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99603 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99525 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47412 * 4.99820 * 3 2 1 25 25 H 1.09008 * 109.47350 * 245.00039 * 3 2 1 26 26 H 1.08995 * 109.47115 * 59.99561 * 4 3 2 27 27 H 1.08994 * 109.46776 * 300.00057 * 4 3 2 28 28 H 1.09007 * 109.46899 * 300.00480 * 11 9 8 29 29 H 1.08993 * 109.47037 * 60.00131 * 11 9 8 30 30 H 1.08997 * 109.47084 * 180.02562 * 11 9 8 31 31 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6383 1.1819 6 7 3.4291 3.7332 1.7826 7 8 4.2498 4.6056 1.5912 8 6 5.2402 4.1361 0.8264 9 6 6.4523 4.8997 0.3589 10 1 7.0795 4.2484 -0.2498 11 6 6.0069 6.1030 -0.4744 12 6 7.2360 5.3785 1.5537 13 1 6.8885 5.1563 2.5518 14 6 8.3941 6.1047 1.3726 15 7 8.8175 6.3748 0.1572 16 14 9.3614 6.7047 2.8537 17 1 10.3610 5.6774 3.2414 18 1 10.0594 7.9695 2.5096 19 1 8.4327 6.9445 3.9874 20 7 4.9528 2.8855 0.5562 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4025 -0.9314 26 1 3.7399 0.5064 1.0920 27 1 2.4773 1.2355 2.1129 28 1 5.4400 5.7567 -1.3386 29 1 5.3798 6.7543 0.1342 30 1 6.8837 6.6551 -0.8129 31 1 9.6324 6.8854 0.0298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = 48.400708 kcal Electronic energy + Delta-G solvation = -14560.339502 eV Core-core repulsion = 12037.377632 eV Total energy + Delta-G solvation = -2522.961870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.40684 -37.66478 -36.96344 -35.83792 -33.90145 -31.99026 -30.80300 -27.37525 -25.89036 -25.22315 -23.61838 -21.46373 -20.72674 -19.09266 -18.40468 -17.92485 -16.94779 -16.32032 -15.68225 -15.58570 -14.96006 -14.73122 -13.81901 -13.75008 -13.60203 -13.28218 -13.05396 -12.87450 -12.64155 -12.35520 -12.26646 -12.15542 -11.99756 -11.90951 -11.81943 -11.34050 -10.69763 -10.56855 -10.23451 -8.22211 -6.38796 0.27033 1.26368 1.44957 1.45264 1.47972 1.57500 2.07399 2.40272 2.80608 3.07682 3.21086 3.90398 4.05971 4.16504 4.32981 4.43321 4.56819 4.69379 4.82786 4.85362 4.93155 4.98820 5.06407 5.09260 5.12502 5.40637 5.64568 5.73277 5.82632 5.88302 6.03775 6.62893 7.27488 7.30539 8.83706 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.062005 B = 0.005519 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.467937 B = 5071.837505 C = 5215.062401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.082 4.082 4 C -0.016 4.016 5 C 0.166 3.834 6 N -0.420 5.420 7 O 0.051 5.949 8 C 0.234 3.766 9 C 0.125 3.875 10 H 0.055 0.945 11 C -0.127 4.127 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.904 5.904 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.272 1.272 20 N -0.526 5.526 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.127 0.873 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 -8.373 -0.190 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.121 4.121 4 C -0.055 4.055 5 C -0.107 4.107 6 N -0.136 5.136 7 O 0.001 5.999 8 C 0.015 3.985 9 C 0.105 3.895 10 H 0.073 0.927 11 C -0.186 4.186 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.170 4.170 15 N -0.541 5.541 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.196 1.196 20 N -0.261 5.261 21 H 0.135 0.865 22 H 0.112 0.888 23 H 0.145 0.855 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.076 -8.575 -0.007 14.007 hybrid contribution 0.829 0.606 0.590 1.184 sum -10.247 -7.969 0.582 12.994 Atomic orbital electron populations 1.24066 0.95749 1.02735 0.99868 1.22874 0.96233 0.97530 1.00947 1.20630 0.97222 0.97026 0.97218 1.20064 0.96762 0.87329 1.01343 1.26568 0.91819 0.98403 0.93936 1.74509 1.14742 0.99890 1.24453 1.85229 1.25740 1.35760 1.53160 1.29881 0.92404 0.89300 0.86885 1.17642 0.83060 0.92583 0.96216 0.92705 1.21696 1.01527 0.97971 0.97371 1.21047 1.08983 1.36693 0.91624 0.93031 1.25578 0.97431 0.95059 0.98918 1.69939 1.23378 1.39074 1.21742 0.85466 0.78496 0.78041 0.79183 1.19995 1.19912 1.19635 1.71971 1.14520 1.13409 1.26185 0.86473 0.88818 0.85469 0.92062 0.91249 0.87395 0.87953 0.94614 0.93992 0.89678 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 14.32 67.78 0.97 -2.00 16 2 C -0.16 -2.82 9.52 25.64 0.24 -2.57 16 3 C -0.08 -1.93 5.64 29.85 0.17 -1.76 16 4 C -0.02 -0.43 5.82 29.85 0.17 -0.26 16 5 C 0.17 6.32 7.47 138.46 1.03 7.35 16 6 N -0.42 -17.53 12.16 -60.34 -0.73 -18.27 16 7 O 0.05 2.33 11.31 74.79 0.85 3.18 16 8 C 0.23 10.93 6.96 88.38 0.61 11.54 16 9 C 0.13 6.26 2.77 -12.29 -0.03 6.22 16 10 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 11 C -0.13 -5.84 8.95 71.98 0.64 -5.20 16 12 C -0.55 -29.16 8.55 25.60 0.22 -28.94 16 13 H 0.05 2.80 7.74 -2.92 -0.02 2.78 16 14 C 0.03 1.65 5.30 84.66 0.45 2.10 16 15 N -0.90 -48.21 11.33 21.45 0.24 -47.97 16 16 Si 0.96 41.54 29.54 68.60 2.03 43.56 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 N -0.53 -23.04 11.55 -303.22 -3.50 -26.55 16 21 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 22 H 0.09 1.52 7.84 -2.91 -0.02 1.50 16 23 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 24 H 0.06 1.51 7.79 -2.38 -0.02 1.49 16 25 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 4.19 6.08 -2.39 -0.01 4.18 16 31 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -57.69 275.23 4.47 -53.22 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.11 Total: 6.34 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.48 Total: -13.51 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.99 Total: -92.78 kcal Atomic # 8 Polarization: 2.33 SS G_CDS: 0.85 Total: 3.18 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -57.69 4.47 -53.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.617 kcal (2) G-P(sol) polarization free energy of solvation -57.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds