Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1 14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1 15 15 C 1.47068 * 136.06318 * 359.62783 * 14 12 2 16 16 C 1.53241 * 88.08407 * 207.20327 * 15 14 12 17 17 C 1.53001 * 114.32497 * 220.46810 * 16 15 14 18 18 C 1.47200 * 114.01411 * 87.71713 * 16 15 14 19 19 N 5.25322 * 117.73524 * 60.92368 * 2 1 3 20 20 C 1.47074 * 136.05268 * 179.97438 * 14 12 2 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09005 * 113.46591 * 321.93882 * 15 14 12 26 26 H 1.09006 * 113.46817 * 92.37487 * 15 14 12 27 27 H 1.08992 * 109.47104 * 153.76027 * 17 16 15 28 28 H 1.08999 * 109.46961 * 273.76092 * 17 16 15 29 29 H 1.09008 * 109.47212 * 33.75858 * 17 16 15 30 30 H 1.09007 * 113.46409 * 267.62168 * 20 14 12 31 31 H 1.08992 * 113.46857 * 38.06587 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 0.9212 0.8724 2.9893 16 6 1.8034 0.8261 4.2415 17 6 1.0452 1.0311 5.5545 18 6 3.0289 1.6353 4.1411 19 7 3.9748 2.2596 4.0637 20 6 1.9858 -0.6453 3.8433 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7011 1.1560 -3.4844 25 1 1.0325 1.7925 2.4155 26 1 -0.1212 0.6193 3.1831 27 1 1.5864 0.5452 6.3662 28 1 0.9600 2.0978 5.7620 29 1 0.0490 0.5966 5.4706 30 1 1.2295 -1.3065 4.2667 31 1 3.0005 -1.0133 3.9944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597604126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = 1.637213 kcal Electronic energy + Delta-G solvation = -15008.218584 eV Core-core repulsion = 12483.228896 eV Total energy + Delta-G solvation = -2524.989687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77243 -39.32243 -37.12400 -35.80405 -33.19100 -32.03365 -27.79788 -27.31958 -26.94202 -24.56636 -23.32027 -20.14024 -18.41551 -17.91757 -17.38090 -16.98001 -16.59962 -16.13061 -15.23311 -14.99954 -14.86179 -14.49213 -14.23683 -13.71768 -13.35872 -13.34450 -13.05118 -12.95079 -12.74815 -12.68672 -12.54485 -12.40739 -12.21203 -12.04629 -11.40460 -11.05038 -10.63089 -10.32292 -9.68372 -8.18657 -6.29548 1.36936 1.38621 1.50021 1.52216 1.65054 1.84147 2.01592 2.42779 2.74399 3.10505 3.25792 3.67880 4.03645 4.18143 4.55417 4.60530 4.62087 4.74362 4.84651 4.93776 4.97517 5.05061 5.08871 5.16928 5.46687 5.49915 5.71271 5.96508 6.21120 6.45523 6.71065 6.83000 7.36387 7.44150 8.87302 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.044028 B = 0.007033 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.804615 B = 3980.436003 C = 4018.081851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.031 3.969 3 H 0.028 0.972 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.268 1.268 11 H -0.275 1.275 12 C 0.548 3.452 13 O -0.591 6.591 14 N -0.669 5.669 15 C 0.119 3.881 16 C 0.001 3.999 17 C -0.119 4.119 18 C 0.250 3.750 19 N -0.483 5.483 20 C 0.116 3.884 21 H 0.069 0.931 22 H 0.025 0.975 23 H 0.060 0.940 24 H 0.266 0.734 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 1.218 16.305 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.010 3.990 3 H 0.046 0.954 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.194 1.194 11 H -0.201 1.201 12 C 0.341 3.659 13 O -0.471 6.471 14 N -0.406 5.406 15 C -0.004 4.004 16 C -0.003 4.003 17 C -0.177 4.177 18 C -0.067 4.067 19 N -0.158 5.158 20 C -0.007 4.007 21 H 0.087 0.913 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.170 0.830 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.164 0.836 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.323 1.685 15.763 16.723 hybrid contribution 0.539 -0.548 -1.286 1.498 sum -4.785 1.137 14.477 15.290 Atomic orbital electron populations 1.21541 0.94167 0.99642 1.02036 1.18733 0.96045 0.95138 0.89090 0.95372 1.21343 1.31705 1.12860 0.91317 0.93607 1.25600 0.95107 0.95768 1.01411 1.69954 1.37070 1.23515 1.24339 0.85541 0.78494 0.78534 0.79317 1.20574 1.19353 1.20094 1.21199 0.77947 0.83016 0.83744 1.90515 1.40761 1.29179 1.86626 1.49888 1.53366 1.32668 1.04631 1.23473 0.97788 0.90088 0.89083 1.19625 0.87226 0.92871 1.00570 1.21732 1.01048 1.04435 0.90494 1.28874 0.93861 0.92657 0.91340 1.81232 1.12662 1.11762 1.10179 1.23372 1.03797 0.94344 0.79174 0.91267 0.95595 0.92126 0.92497 0.90650 0.83028 0.89667 0.90532 0.86605 0.83629 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.85 71.98 0.64 -4.52 16 2 C 0.03 1.60 2.52 -12.29 -0.03 1.57 16 3 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.53 -31.85 8.38 25.60 0.21 -31.64 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -51.64 11.31 21.45 0.24 -51.40 16 8 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 9 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 C 0.55 25.93 7.40 87.66 0.65 26.57 16 13 O -0.59 -32.95 16.23 -3.02 -0.05 -33.00 16 14 N -0.67 -21.86 3.52 -858.59 -3.02 -24.88 16 15 C 0.12 2.43 5.85 83.10 0.49 2.92 16 16 C 0.00 0.02 1.44 -53.73 -0.08 -0.05 16 17 C -0.12 -0.74 9.27 71.98 0.67 -0.08 16 18 C 0.25 6.71 14.47 89.44 1.29 8.01 16 19 N -0.48 -16.43 18.54 20.01 0.37 -16.05 16 20 C 0.12 2.48 7.76 83.19 0.65 3.13 16 21 H 0.07 3.44 6.06 -2.39 -0.01 3.42 16 22 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.06 2.06 6.35 -2.39 -0.02 2.05 16 24 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 25 H 0.07 1.76 8.09 -2.38 -0.02 1.74 16 26 H 0.15 1.75 7.89 -2.38 -0.02 1.73 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.08 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.12 0.08 7.90 -2.38 -0.02 0.06 16 30 H 0.15 1.87 8.10 -2.38 -0.02 1.85 16 31 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -79.98 271.80 5.63 -74.35 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: 1.13 Total: -4.29 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.93 Total: 7.52 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -2.40 Total: -92.33 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.98 5.63 -74.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.985 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds