Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47617 * 2 1 4 4 C 1.50702 * 109.47590 * 120.00237 * 2 1 3 5 5 H 1.08000 * 119.99473 * 25.12992 * 4 2 1 6 6 C 1.37873 * 120.00043 * 205.13235 * 4 2 1 7 7 N 1.31513 * 120.00165 * 357.07055 * 6 4 2 8 8 Si 1.86796 * 119.99994 * 177.07287 * 6 4 2 9 9 H 1.48498 * 109.47538 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47260 * 299.99843 * 8 6 4 11 11 H 1.48507 * 109.47128 * 59.99828 * 8 6 4 12 12 C 1.50705 * 109.47006 * 240.00380 * 2 1 3 13 13 O 1.21284 * 119.99555 * 240.00389 * 12 2 1 14 14 N 1.34775 * 120.00068 * 59.99526 * 12 2 1 15 15 C 1.47067 * 136.05873 * 359.63011 * 14 12 2 16 16 C 1.53764 * 87.88511 * 152.96300 * 15 14 12 17 17 C 1.53000 * 114.08278 * 139.78497 * 16 15 14 18 18 C 1.47195 * 114.39330 * 272.67628 * 16 15 14 19 19 N 5.25371 * 117.68685 * 299.09299 * 2 1 3 20 20 C 1.47070 * 136.05449 * 180.02562 * 14 12 2 21 21 H 1.09004 * 109.47341 * 174.58191 * 1 2 3 22 22 H 1.09006 * 109.46820 * 294.57645 * 1 2 3 23 23 H 1.08998 * 109.47431 * 54.57860 * 1 2 3 24 24 H 0.97004 * 119.99906 * 354.44883 * 7 6 4 25 25 H 1.08992 * 113.46876 * 267.69575 * 15 14 12 26 26 H 1.08997 * 113.46172 * 38.13874 * 15 14 12 27 27 H 1.09005 * 109.46675 * 326.55597 * 17 16 15 28 28 H 1.08995 * 109.47105 * 86.55772 * 17 16 15 29 29 H 1.09003 * 109.47009 * 206.56557 * 17 16 15 30 30 H 1.08993 * 113.46801 * 321.86249 * 20 14 12 31 31 H 1.08993 * 113.47070 * 92.24896 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4140 -1.4502 1.7171 6 6 3.2813 -0.4161 1.7347 7 7 4.0573 0.4422 1.1096 8 14 3.8713 -1.2363 3.3058 9 1 5.2366 -0.7532 3.6340 10 1 2.9468 -0.8988 4.4178 11 1 3.8994 -2.7088 3.1150 12 6 2.0322 -0.7104 -1.2306 13 8 2.7294 -1.6965 -1.1193 14 7 1.7065 -0.2499 -2.4546 15 6 0.9101 0.8649 -2.9893 16 6 1.8012 0.8259 -4.2418 17 6 1.0423 1.0298 -5.5546 18 6 3.0258 1.6365 -4.1421 19 7 3.9710 2.2620 -4.0652 20 6 1.9855 -0.6452 -3.8435 21 1 -0.3634 -1.0231 -0.0970 22 1 -0.3633 0.4274 0.9346 23 1 -0.3634 0.5956 -0.8374 24 1 3.7857 0.8070 0.2528 25 1 -0.1286 0.6005 -3.1873 26 1 1.0091 1.7846 -2.4129 27 1 0.0468 0.5940 -5.4702 28 1 0.9557 2.0963 -5.7623 29 1 1.5838 0.5442 -6.3665 30 1 3.0006 -1.0120 -3.9948 31 1 1.2306 -1.3081 -4.2661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597604127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = 22.363237 kcal Electronic energy + Delta-G solvation = -15198.350581 eV Core-core repulsion = 12674.259642 eV Total energy + Delta-G solvation = -2524.090939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48049 -37.56892 -35.78267 -33.75342 -31.80149 -30.62538 -26.61076 -26.04116 -24.64130 -23.30360 -21.82139 -18.78337 -16.87562 -16.75834 -15.74481 -15.41353 -15.12837 -14.00905 -13.82268 -13.74812 -13.65390 -13.04100 -12.87800 -12.46823 -12.22841 -12.00056 -11.92195 -11.66241 -11.56259 -11.22560 -10.98295 -10.69588 -10.42309 -10.10527 -9.82558 -8.76720 -8.58629 -8.31391 -8.19472 -6.36978 -4.09811 2.68292 2.82220 3.35581 3.48386 3.53820 3.68962 3.70443 3.84664 4.24510 4.56535 4.69069 4.91322 5.26686 5.40067 5.43172 5.49250 5.56444 5.62145 5.73094 5.85831 5.90062 6.12851 6.23446 6.38018 6.59710 7.06430 7.11922 7.63835 7.95010 8.36456 8.47096 8.81762 9.31125 9.63157 11.01055 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.008229 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.438800 B = 3401.676459 C = 3689.073813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 H 0.054 0.946 4 C -0.574 4.574 5 H 0.055 0.945 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 1.072 2.928 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.535 3.465 13 O -0.519 6.519 14 N -0.661 5.661 15 C 0.125 3.875 16 C -0.019 4.019 17 C -0.127 4.127 18 C 0.233 3.767 19 N -0.420 5.420 20 C 0.114 3.886 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.265 0.735 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 1.444 -11.873 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.006 4.006 3 H 0.072 0.928 4 C -0.612 4.612 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.533 5.533 8 Si 0.899 3.101 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.328 3.672 13 O -0.391 6.391 14 N -0.402 5.402 15 C -0.001 4.001 16 C -0.023 4.023 17 C -0.186 4.186 18 C -0.085 4.085 19 N -0.094 5.094 20 C -0.011 4.011 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.073 1.714 -10.304 12.615 hybrid contribution -1.550 -0.277 -1.316 2.052 sum -8.623 1.438 -11.620 14.541 Atomic orbital electron populations 1.21659 0.96299 1.00095 1.00070 1.19110 0.93176 0.97684 0.90590 0.92786 1.21612 1.04008 1.25815 1.09719 0.92701 1.25896 0.93081 0.95223 1.03641 1.70803 1.38969 1.27568 1.15972 0.83520 0.76256 0.75910 0.74383 1.20778 1.21309 1.21247 1.22811 0.78555 0.84335 0.81530 1.90569 1.37065 1.26557 1.84912 1.50390 1.53497 1.31851 1.04468 1.22985 0.95210 0.92278 0.89617 1.19542 0.89030 0.95278 0.98454 1.21627 1.00044 1.03213 0.93668 1.27944 0.93735 0.93587 0.93272 1.81234 1.10512 1.09747 1.07926 1.22885 1.02823 0.92175 0.83176 0.93881 0.92423 0.94922 0.92392 0.88342 0.90001 0.90063 0.91330 0.91093 0.90486 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.99 37.15 0.33 -2.09 16 2 C 0.02 0.39 2.15 -92.92 -0.20 0.19 16 3 H 0.05 1.42 6.99 -51.93 -0.36 1.06 16 4 C -0.57 -16.51 7.55 -34.44 -0.26 -16.77 16 5 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.03 0.81 5.46 -17.82 -0.10 0.71 16 7 N -0.90 -28.39 13.58 55.43 0.75 -27.63 16 8 Si 1.07 26.38 29.90 -169.99 -5.08 21.30 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.54 13.13 7.14 -10.98 -0.08 13.05 16 13 O -0.52 -15.12 16.81 5.55 0.09 -15.03 16 14 N -0.66 -12.05 3.51 -184.99 -0.65 -12.70 16 15 C 0.12 1.55 5.92 -8.36 -0.05 1.50 16 16 C -0.02 -0.21 1.45 -156.63 -0.23 -0.44 16 17 C -0.13 -0.84 9.27 37.16 0.34 -0.49 16 18 C 0.23 3.61 14.50 -20.76 -0.30 3.31 16 19 N -0.42 -7.81 18.54 42.15 0.78 -7.03 16 20 C 0.11 1.55 7.75 -8.49 -0.07 1.49 16 21 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.03 0.51 6.53 -51.93 -0.34 0.17 16 24 H 0.27 8.44 6.65 -40.82 -0.27 8.17 16 25 H 0.10 0.87 7.93 -51.93 -0.41 0.46 16 26 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 27 H 0.08 0.37 7.89 -51.93 -0.41 -0.04 16 28 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -37.14 274.51 -4.52 -41.66 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -3.95 Total: -5.19 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.60 Total: 0.48 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.88 Total: -47.35 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.09 Total: -15.03 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.08 Total: 21.30 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -37.14 -4.52 -41.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.026 kcal (2) G-P(sol) polarization free energy of solvation -37.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds