Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47617 * 2 1 4 4 C 1.50702 * 109.47590 * 120.00237 * 2 1 3 5 5 H 1.08000 * 119.99473 * 25.12992 * 4 2 1 6 6 C 1.37873 * 120.00043 * 205.13235 * 4 2 1 7 7 N 1.31513 * 120.00165 * 357.07055 * 6 4 2 8 8 Si 1.86796 * 119.99994 * 177.07287 * 6 4 2 9 9 H 1.48498 * 109.47538 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47260 * 299.99843 * 8 6 4 11 11 H 1.48507 * 109.47128 * 59.99828 * 8 6 4 12 12 C 1.50705 * 109.47006 * 240.00380 * 2 1 3 13 13 O 1.21284 * 119.99555 * 240.00389 * 12 2 1 14 14 N 1.34775 * 120.00068 * 59.99526 * 12 2 1 15 15 C 1.47067 * 136.05873 * 359.63011 * 14 12 2 16 16 C 1.53764 * 87.88511 * 152.96300 * 15 14 12 17 17 C 1.53000 * 114.08278 * 139.78497 * 16 15 14 18 18 C 1.47195 * 114.39330 * 272.67628 * 16 15 14 19 19 N 5.25371 * 117.68685 * 299.09299 * 2 1 3 20 20 C 1.47070 * 136.05449 * 180.02562 * 14 12 2 21 21 H 1.09004 * 109.47341 * 174.58191 * 1 2 3 22 22 H 1.09006 * 109.46820 * 294.57645 * 1 2 3 23 23 H 1.08998 * 109.47431 * 54.57860 * 1 2 3 24 24 H 0.97004 * 119.99906 * 354.44883 * 7 6 4 25 25 H 1.08992 * 113.46876 * 267.69575 * 15 14 12 26 26 H 1.08997 * 113.46172 * 38.13874 * 15 14 12 27 27 H 1.09005 * 109.46675 * 326.55597 * 17 16 15 28 28 H 1.08995 * 109.47105 * 86.55772 * 17 16 15 29 29 H 1.09003 * 109.47009 * 206.56557 * 17 16 15 30 30 H 1.08993 * 113.46801 * 321.86249 * 20 14 12 31 31 H 1.08993 * 113.47070 * 92.24896 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4140 -1.4502 1.7171 6 6 3.2813 -0.4161 1.7347 7 7 4.0573 0.4422 1.1096 8 14 3.8713 -1.2363 3.3058 9 1 5.2366 -0.7532 3.6340 10 1 2.9468 -0.8988 4.4178 11 1 3.8994 -2.7088 3.1150 12 6 2.0322 -0.7104 -1.2306 13 8 2.7294 -1.6965 -1.1193 14 7 1.7065 -0.2499 -2.4546 15 6 0.9101 0.8649 -2.9893 16 6 1.8012 0.8259 -4.2418 17 6 1.0423 1.0298 -5.5546 18 6 3.0258 1.6365 -4.1421 19 7 3.9710 2.2620 -4.0652 20 6 1.9855 -0.6452 -3.8435 21 1 -0.3634 -1.0231 -0.0970 22 1 -0.3633 0.4274 0.9346 23 1 -0.3634 0.5956 -0.8374 24 1 3.7857 0.8070 0.2528 25 1 -0.1286 0.6005 -3.1873 26 1 1.0091 1.7846 -2.4129 27 1 0.0468 0.5940 -5.4702 28 1 0.9557 2.0963 -5.7623 29 1 1.5838 0.5442 -6.3665 30 1 3.0006 -1.0120 -3.9948 31 1 1.2306 -1.3081 -4.2661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597604127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -5.124649 kcal Electronic energy + Delta-G solvation = -15199.542545 eV Core-core repulsion = 12674.259642 eV Total energy + Delta-G solvation = -2525.282904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76160 -39.32028 -37.17112 -35.81585 -33.33821 -32.17834 -27.78840 -27.16755 -26.64671 -24.63800 -23.43011 -20.42330 -18.80804 -18.07118 -17.28115 -16.83875 -16.55188 -15.75334 -15.62057 -15.19481 -14.92255 -14.54303 -14.25127 -13.79242 -13.49871 -13.40335 -13.11696 -12.95512 -12.80162 -12.73509 -12.62308 -12.41219 -12.03125 -11.78707 -11.43962 -10.84970 -10.66985 -10.31284 -9.66759 -8.68824 -6.40130 1.45408 1.46689 1.56953 1.61315 1.74878 1.92256 2.01433 2.54746 2.71415 3.16330 3.23039 3.66281 4.03531 4.17096 4.45265 4.48437 4.54974 4.55596 4.63069 4.76063 4.85758 4.97062 5.03305 5.07058 5.29275 5.41428 5.44892 5.89339 6.10564 6.41599 6.47514 6.84794 7.40225 7.51605 8.69695 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.008229 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.438800 B = 3401.676459 C = 3689.073813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.005 3.995 3 H 0.032 0.968 4 C -0.584 4.584 5 H 0.049 0.951 6 C -0.030 4.030 7 N -0.933 5.933 8 Si 1.112 2.888 9 H -0.286 1.286 10 H -0.255 1.255 11 H -0.281 1.281 12 C 0.533 3.467 13 O -0.585 6.585 14 N -0.675 5.675 15 C 0.121 3.879 16 C 0.000 4.000 17 C -0.118 4.118 18 C 0.247 3.753 19 N -0.485 5.485 20 C 0.112 3.888 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.248 0.752 25 H 0.158 0.842 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.301 1.283 -13.505 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.017 4.017 3 H 0.050 0.950 4 C -0.622 4.622 5 H 0.068 0.932 6 C -0.228 4.228 7 N -0.570 5.570 8 Si 0.934 3.066 9 H -0.212 1.212 10 H -0.179 1.179 11 H -0.207 1.207 12 C 0.325 3.675 13 O -0.464 6.464 14 N -0.412 5.412 15 C -0.002 4.002 16 C -0.005 4.005 17 C -0.176 4.176 18 C -0.070 4.070 19 N -0.160 5.160 20 C -0.012 4.012 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.175 0.825 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.195 1.607 -11.999 15.827 hybrid contribution -0.688 -0.201 -0.951 1.191 sum -10.883 1.406 -12.950 16.974 Atomic orbital electron populations 1.21552 0.92140 1.01079 1.02147 1.19116 0.96676 0.95727 0.90178 0.95042 1.22047 1.03674 1.25148 1.11285 0.93224 1.27302 0.93772 0.95269 1.06439 1.70946 1.39956 1.30145 1.15956 0.83031 0.76252 0.75193 0.72172 1.21206 1.17924 1.20669 1.22134 0.78188 0.83531 0.83621 1.90521 1.39987 1.29387 1.86484 1.50130 1.53330 1.33193 1.04582 1.23573 0.97553 0.90136 0.88909 1.19741 0.87222 0.92579 1.00910 1.21735 1.01042 1.04460 0.90350 1.28969 0.93984 0.92694 0.91373 1.81243 1.12609 1.12032 1.10136 1.23344 1.03227 0.94511 0.80075 0.93756 0.92298 0.90516 0.94232 0.82468 0.90731 0.86287 0.90444 0.89940 0.93032 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.99 71.98 0.65 -3.50 16 2 C 0.00 0.23 2.15 -12.29 -0.03 0.20 16 3 H 0.03 1.72 6.99 -2.39 -0.02 1.70 16 4 C -0.58 -34.33 7.55 25.60 0.19 -34.14 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 6 C -0.03 -1.83 5.46 84.65 0.46 -1.36 16 7 N -0.93 -61.47 13.58 21.45 0.29 -61.18 16 8 Si 1.11 54.07 29.90 68.60 2.05 56.12 16 9 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.53 26.41 7.14 87.66 0.63 27.03 16 13 O -0.59 -35.30 16.81 -3.04 -0.05 -35.35 16 14 N -0.67 -23.37 3.51 -857.57 -3.01 -26.38 16 15 C 0.12 2.51 5.92 83.27 0.49 3.01 16 16 C 0.00 0.00 1.45 -53.56 -0.08 -0.08 16 17 C -0.12 -0.87 9.27 71.98 0.67 -0.20 16 18 C 0.25 7.46 14.50 89.44 1.30 8.76 16 19 N -0.48 -18.41 18.54 20.00 0.37 -18.04 16 20 C 0.11 2.71 7.75 83.19 0.64 3.35 16 21 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 23 H 0.08 2.11 6.53 -2.39 -0.02 2.10 16 24 H 0.25 16.67 6.65 -92.71 -0.62 16.05 16 25 H 0.16 1.60 7.93 -2.39 -0.02 1.58 16 26 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 27 H 0.12 0.10 7.89 -2.38 -0.02 0.09 16 28 H 0.08 0.53 8.13 -2.39 -0.02 0.51 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.15 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -89.23 274.51 5.85 -83.38 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: 1.28 Total: -1.62 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.93 Total: 3.06 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -2.35 Total: -105.60 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.35 kcal Atomic # 14 Polarization: 54.07 SS G_CDS: 2.05 Total: 56.12 kcal Total: -89.23 5.85 -83.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.256 kcal (2) G-P(sol) polarization free energy of solvation -89.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds