Wall clock time and date at job start Mon Mar 30 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47422 * 2 1 4 4 C 1.47208 * 109.46990 * 240.00244 * 2 1 3 5 5 N 2.60809 * 109.46990 * 240.00204 * 2 1 3 6 6 C 1.50703 * 109.47649 * 120.00245 * 2 1 3 7 7 O 1.21282 * 120.00010 * 117.34438 * 6 2 1 8 8 N 1.34781 * 119.99458 * 297.07056 * 6 2 1 9 9 C 1.47059 * 136.05843 * 355.15631 * 8 6 2 10 10 C 1.53760 * 87.88781 * 152.96362 * 9 8 6 11 11 C 1.50696 * 114.26635 * 139.78958 * 10 9 8 12 12 H 1.08003 * 120.00133 * 266.47318 * 11 10 9 13 13 C 1.37878 * 119.99952 * 86.48014 * 11 10 9 14 14 N 1.31511 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00012 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47418 * 89.99873 * 15 13 11 17 17 H 1.48503 * 109.46799 * 210.00175 * 15 13 11 18 18 H 1.48504 * 109.46931 * 329.99416 * 15 13 11 19 19 C 1.47060 * 136.05259 * 175.53023 * 8 6 2 20 20 H 1.09003 * 109.46492 * 305.35420 * 1 2 3 21 21 H 1.08995 * 109.47376 * 65.35301 * 1 2 3 22 22 H 1.08997 * 109.46540 * 185.35807 * 1 2 3 23 23 H 1.08996 * 109.47119 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46871 * 300.00466 * 3 2 1 25 25 H 1.08997 * 109.46738 * 60.00049 * 3 2 1 26 26 H 1.08999 * 113.47028 * 267.69229 * 9 8 6 27 27 H 1.09003 * 113.47028 * 38.14075 * 9 8 6 28 28 H 1.08998 * 114.39814 * 272.67859 * 10 9 8 29 29 H 0.96996 * 120.00707 * 180.02562 * 14 13 11 30 30 H 1.09005 * 113.47046 * 321.85781 * 19 8 6 31 31 H 1.08997 * 113.47269 * 92.24605 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1296 6 6 2.0325 -0.7105 1.2304 7 8 2.6895 -1.7238 1.1197 8 7 1.7563 -0.2165 2.4537 9 6 1.1000 0.9869 2.9863 10 6 0.7410 0.1681 4.2373 11 6 0.8809 0.9241 5.5334 12 1 1.8009 0.8655 6.0962 13 6 -0.1656 1.6906 6.0008 14 7 -1.2856 1.7623 5.3154 15 14 0.0081 2.6283 7.6071 16 1 0.5517 3.9827 7.3333 17 1 -1.3225 2.7505 8.2551 18 1 0.9329 1.8967 8.5098 19 6 1.9846 -0.6407 3.8431 20 1 -0.3632 0.5947 0.8382 21 1 -0.3634 0.4285 -0.9340 22 1 -0.3632 -1.0232 0.0960 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.7911 1.8055 3.1870 27 1 0.2314 1.3001 2.4069 28 1 -0.1949 -0.3851 4.1601 29 1 -2.0217 2.3018 5.6440 30 1 1.8698 -1.7142 3.9937 31 1 2.9095 -0.2520 4.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:40 Heat of formation + Delta-G solvation = 4.050265 kcal Electronic energy + Delta-G solvation = -15030.933744 eV Core-core repulsion = 12506.048695 eV Total energy + Delta-G solvation = -2524.885049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.59045 -39.24956 -37.77308 -35.62048 -34.52195 -30.76456 -28.41290 -27.13925 -26.67025 -25.09412 -22.49048 -20.42867 -18.75944 -18.35458 -17.61132 -16.62126 -16.40839 -16.24506 -15.57276 -14.70083 -14.63424 -14.49926 -14.10171 -13.85221 -13.39305 -13.36181 -13.26129 -13.08202 -12.88494 -12.79222 -12.61279 -12.40650 -12.25988 -12.08570 -11.31919 -10.95483 -10.70875 -10.41924 -9.56741 -8.09697 -6.18794 1.30929 1.42647 1.52519 1.57060 1.62551 1.64277 2.11170 2.52451 2.64573 3.21110 3.38593 3.70779 3.83533 4.28322 4.45668 4.52191 4.66239 4.67880 4.74067 4.74790 4.80871 4.89712 4.99220 5.09015 5.19771 5.31630 5.69968 5.90595 6.31634 6.33521 6.84514 6.89269 7.02672 7.50765 8.99793 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.053379 B = 0.006706 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.426377 B = 4174.459368 C = 4394.503743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.141 4.141 4 C 0.249 3.751 5 N -0.461 5.461 6 C 0.543 3.457 7 O -0.598 6.598 8 N -0.630 5.630 9 C 0.110 3.890 10 C 0.022 3.978 11 C -0.526 4.526 12 H 0.063 0.937 13 C 0.028 3.972 14 N -0.913 5.913 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.272 1.272 19 C 0.103 3.897 20 H 0.095 0.905 21 H 0.105 0.895 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 4.198 -5.551 7.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.136 5.136 6 C 0.331 3.669 7 O -0.481 6.481 8 N -0.362 5.362 9 C -0.012 4.012 10 C 0.003 3.997 11 C -0.564 4.564 12 H 0.082 0.918 13 C -0.172 4.172 14 N -0.551 5.551 15 Si 0.776 3.224 16 H -0.199 1.199 17 H -0.216 1.216 18 H -0.196 1.196 19 C -0.019 4.019 20 H 0.114 0.886 21 H 0.123 0.877 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.798 2.860 -7.220 7.971 hybrid contribution -0.058 0.280 1.248 1.281 sum 1.739 3.140 -5.972 6.968 Atomic orbital electron populations 1.22002 0.87333 1.04137 1.06302 1.18413 0.99879 0.96587 0.82816 1.22047 1.02208 0.89108 1.06531 1.28588 0.92283 0.92436 0.93615 1.81116 1.09491 1.09186 1.13764 1.20003 0.79044 0.84291 0.83533 1.90692 1.42474 1.28247 1.86645 1.49797 1.56687 1.25699 1.04016 1.23647 0.95706 0.88057 0.93752 1.20294 0.92566 0.93490 0.93387 1.21175 1.00353 1.28385 1.06534 0.91842 1.25606 0.94779 0.97229 0.99628 1.70010 1.04640 1.40448 1.39980 0.85681 0.77100 0.79265 0.80329 1.19853 1.21620 1.19640 1.23334 1.00870 0.99597 0.78095 0.88622 0.87668 0.92198 0.91627 0.87564 0.88570 0.89208 0.89987 0.93659 0.92664 0.92710 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.30 71.98 0.60 -2.42 16 2 C 0.03 0.78 0.73 -54.73 -0.04 0.74 16 3 C -0.14 -2.77 8.28 71.98 0.60 -2.17 16 4 C 0.25 7.73 13.09 89.44 1.17 8.90 16 5 N -0.46 -16.13 18.54 20.01 0.37 -15.76 16 6 C 0.54 19.14 6.71 87.66 0.59 19.73 16 7 O -0.60 -26.24 16.81 -3.04 -0.05 -26.29 16 8 N -0.63 -21.98 3.59 -857.84 -3.08 -25.06 16 9 C 0.11 3.74 5.76 83.27 0.48 4.22 16 10 C 0.02 0.92 3.79 -11.12 -0.04 0.87 16 11 C -0.53 -24.39 8.83 25.60 0.23 -24.16 16 12 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 13 C 0.03 1.36 5.46 84.66 0.46 1.82 16 14 N -0.91 -45.73 13.26 21.45 0.28 -45.45 16 15 Si 0.95 38.21 29.54 68.60 2.03 40.24 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 C 0.10 3.87 8.17 83.18 0.68 4.55 16 20 H 0.10 2.05 5.84 -2.39 -0.01 2.04 16 21 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 1.82 5.85 -2.39 -0.01 1.81 16 26 H 0.09 2.91 8.10 -2.39 -0.02 2.89 16 27 H 0.08 2.57 5.92 -2.39 -0.01 2.55 16 28 H 0.05 2.12 8.11 -2.39 -0.02 2.10 16 29 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 30 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 Total: -1.00 -59.69 270.93 5.40 -54.30 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.13 Total: 5.94 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.72 Total: 12.08 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -2.43 Total: -86.26 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -59.69 5.40 -54.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.345 kcal (2) G-P(sol) polarization free energy of solvation -59.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds