Wall clock time and date at job start Mon Mar 30 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47427 * 2 1 4 4 C 1.52998 * 109.47621 * 120.00547 * 2 1 3 5 5 C 1.50694 * 109.47772 * 184.99976 * 4 2 1 6 6 H 1.08005 * 119.99725 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00506 * 180.27304 * 5 4 2 8 8 N 1.31523 * 119.99548 * 359.72497 * 7 5 4 9 9 Si 1.86799 * 120.00533 * 179.72208 * 7 5 4 10 10 H 1.48493 * 109.47178 * 89.99905 * 9 7 5 11 11 H 1.48493 * 109.47360 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46653 * 329.99954 * 9 7 5 13 13 O 1.42901 * 109.47167 * 240.00378 * 2 1 3 14 14 C 1.36013 * 117.00296 * 85.01133 * 13 2 1 15 15 C 1.38707 * 120.49421 * 354.47974 * 14 13 2 16 16 C 1.38851 * 118.45812 * 179.73724 * 15 14 13 17 17 C 1.38013 * 119.36537 * 0.52748 * 16 15 14 18 18 N 1.32022 * 120.95771 * 359.72934 * 17 16 15 19 19 C 1.32300 * 121.67210 * 0.02562 * 18 17 16 20 20 N 1.39246 * 119.72807 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46659 * 299.99761 * 1 2 3 22 22 H 1.09000 * 109.47010 * 59.99221 * 1 2 3 23 23 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47119 * 64.99168 * 4 2 1 25 25 H 1.09007 * 109.46841 * 304.99731 * 4 2 1 26 26 H 0.97004 * 119.99534 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.77083 * 359.97438 * 15 14 13 28 28 H 1.08002 * 120.31870 * 180.23625 * 16 15 14 29 29 H 1.08000 * 119.52175 * 179.75516 * 17 16 15 30 30 H 0.97004 * 120.00152 * 180.02562 * 20 19 18 31 31 H 0.97005 * 120.00137 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0862 0.5391 7 6 4.2309 -1.1981 2.3548 8 7 3.5769 -1.8425 3.2966 9 14 6.0933 -1.0730 2.4294 10 1 6.4776 0.1463 3.1849 11 1 6.6430 -2.2718 3.1117 12 1 6.6396 -0.9939 1.0508 13 8 2.0063 -0.6736 -1.1668 14 6 2.1128 0.0633 -2.3051 15 6 1.6623 1.3748 -2.3392 16 6 1.7969 2.0900 -3.5218 17 6 2.3600 1.4774 -4.6229 18 7 2.7760 0.2258 -4.5650 19 6 2.6714 -0.4905 -3.4576 20 7 3.1230 -1.8076 -3.4420 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7517 -1.7715 1.2055 25 1 1.6055 -0.2618 2.1369 26 1 4.0617 -2.2530 4.0296 27 1 1.2207 1.8303 -1.4652 28 1 1.4598 3.1144 -3.5807 29 1 2.4623 2.0301 -5.5451 30 1 3.0479 -2.3366 -2.6323 31 1 3.5126 -2.1963 -4.2408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695896283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:05 Heat of formation + Delta-G solvation = -12.376281 kcal Electronic energy + Delta-G solvation = -15001.068100 eV Core-core repulsion = 12475.470742 eV Total energy + Delta-G solvation = -2525.597358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22453 -37.82790 -34.39935 -33.45271 -31.66198 -30.97453 -28.38198 -27.49627 -23.80049 -23.00035 -22.32359 -20.06700 -17.82080 -17.09076 -16.73052 -16.38505 -14.99033 -14.72237 -14.51702 -14.24818 -13.93764 -13.34779 -13.14564 -12.39884 -12.01251 -11.82577 -11.60127 -11.43911 -11.09947 -10.78375 -10.55594 -10.50122 -10.12389 -9.45944 -9.29054 -9.19181 -8.79133 -8.42422 -7.06562 -6.05520 -4.07041 1.68185 1.70951 3.29733 3.36303 3.41229 3.81237 3.90414 4.23917 4.42922 4.94946 5.19475 5.31260 5.34650 5.58660 5.63562 5.73910 5.77116 5.93106 6.16114 6.30480 6.45546 6.58154 6.71777 6.80842 7.38026 7.50101 7.61352 7.80899 7.91193 8.13142 8.32601 8.56440 8.96924 9.56689 11.05763 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.008181 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.068508 B = 3421.678844 C = 3841.536574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.061 0.939 4 C 0.026 3.974 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.292 6.292 14 C 0.042 3.958 15 C -0.142 4.142 16 C -0.195 4.195 17 C 0.088 3.912 18 N -0.523 5.523 19 C 0.383 3.617 20 N -0.847 5.847 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.261 0.739 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.150 0.850 30 H 0.416 0.584 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 4.559 -10.961 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.078 0.922 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.204 6.204 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.218 4.218 17 C -0.066 4.066 18 N -0.243 5.243 19 C 0.143 3.857 20 N -0.392 5.392 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.248 0.752 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.961 3.918 -11.449 12.733 hybrid contribution 0.703 0.359 0.969 1.250 sum -3.258 4.278 -10.480 11.779 Atomic orbital electron populations 1.22406 0.97098 1.02579 1.01382 1.22831 0.91707 0.97082 0.85010 0.92152 1.19262 0.96559 0.96470 0.88782 1.21112 0.91661 1.34372 1.08070 0.92659 1.24974 0.98443 0.95221 0.95667 1.69953 1.35570 1.35836 1.12203 0.86590 0.85714 0.77530 0.78209 1.20676 1.21167 1.19855 1.86192 1.80848 1.37540 1.15812 1.19535 1.00873 0.92168 0.88486 1.21527 1.02262 0.93484 0.99519 1.21577 1.05398 1.01105 0.93756 1.22062 0.96544 0.89822 0.98215 1.67150 1.23407 1.08719 1.24982 1.17817 0.93059 0.87304 0.87564 1.42119 1.69443 1.10050 1.17637 0.91393 0.93387 0.91946 0.95302 0.94390 0.92922 0.84451 0.85558 0.83307 0.75243 0.77322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.19 37.16 0.34 -2.60 16 2 C 0.09 1.81 2.17 -26.73 -0.06 1.76 16 3 H 0.06 1.20 6.35 -51.93 -0.33 0.87 16 4 C 0.03 0.65 4.68 -27.89 -0.13 0.52 16 5 C -0.51 -14.30 8.88 -34.45 -0.31 -14.61 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 O -0.29 -6.00 8.80 -19.78 -0.17 -6.18 16 14 C 0.04 0.78 6.64 -38.92 -0.26 0.52 16 15 C -0.14 -2.30 8.34 -39.18 -0.33 -2.63 16 16 C -0.20 -2.73 10.10 -39.44 -0.40 -3.13 16 17 C 0.09 1.26 11.17 -17.55 -0.20 1.06 16 18 N -0.52 -8.71 10.39 -12.29 -0.13 -8.84 16 19 C 0.38 6.75 7.77 -154.71 -1.20 5.55 16 20 N -0.85 -13.01 9.08 31.24 0.28 -12.73 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.05 0.71 6.94 -51.93 -0.36 0.35 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.14 2.08 5.58 -52.48 -0.29 1.79 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.42 6.49 8.17 -40.82 -0.33 6.16 16 31 H 0.40 5.12 8.95 -40.82 -0.37 4.76 16 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -30.78 267.55 -6.66 -37.45 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.76 Total: 7.24 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.63 Total: -12.01 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.89 Total: -47.22 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.17 Total: -6.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.78 -6.66 -37.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695896283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds