Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47427 * 2 1 4 4 C 1.52998 * 109.47621 * 120.00547 * 2 1 3 5 5 C 1.50694 * 109.47772 * 184.99976 * 4 2 1 6 6 H 1.08005 * 119.99725 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00506 * 180.27304 * 5 4 2 8 8 N 1.31523 * 119.99548 * 359.72497 * 7 5 4 9 9 Si 1.86799 * 120.00533 * 179.72208 * 7 5 4 10 10 H 1.48493 * 109.47178 * 89.99905 * 9 7 5 11 11 H 1.48493 * 109.47360 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46653 * 329.99954 * 9 7 5 13 13 O 1.42901 * 109.47167 * 240.00378 * 2 1 3 14 14 C 1.36013 * 117.00296 * 85.01133 * 13 2 1 15 15 C 1.38707 * 120.49421 * 354.47974 * 14 13 2 16 16 C 1.38851 * 118.45812 * 179.73724 * 15 14 13 17 17 C 1.38013 * 119.36537 * 0.52748 * 16 15 14 18 18 N 1.32022 * 120.95771 * 359.72934 * 17 16 15 19 19 C 1.32300 * 121.67210 * 0.02562 * 18 17 16 20 20 N 1.39246 * 119.72807 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46659 * 299.99761 * 1 2 3 22 22 H 1.09000 * 109.47010 * 59.99221 * 1 2 3 23 23 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47119 * 64.99168 * 4 2 1 25 25 H 1.09007 * 109.46841 * 304.99731 * 4 2 1 26 26 H 0.97004 * 119.99534 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.77083 * 359.97438 * 15 14 13 28 28 H 1.08002 * 120.31870 * 180.23625 * 16 15 14 29 29 H 1.08000 * 119.52175 * 179.75516 * 17 16 15 30 30 H 0.97004 * 120.00152 * 180.02562 * 20 19 18 31 31 H 0.97005 * 120.00137 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0862 0.5391 7 6 4.2309 -1.1981 2.3548 8 7 3.5769 -1.8425 3.2966 9 14 6.0933 -1.0730 2.4294 10 1 6.4776 0.1463 3.1849 11 1 6.6430 -2.2718 3.1117 12 1 6.6396 -0.9939 1.0508 13 8 2.0063 -0.6736 -1.1668 14 6 2.1128 0.0633 -2.3051 15 6 1.6623 1.3748 -2.3392 16 6 1.7969 2.0900 -3.5218 17 6 2.3600 1.4774 -4.6229 18 7 2.7760 0.2258 -4.5650 19 6 2.6714 -0.4905 -3.4576 20 7 3.1230 -1.8076 -3.4420 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7517 -1.7715 1.2055 25 1 1.6055 -0.2618 2.1369 26 1 4.0617 -2.2530 4.0296 27 1 1.2207 1.8303 -1.4652 28 1 1.4598 3.1144 -3.5807 29 1 2.4623 2.0301 -5.5451 30 1 3.0479 -2.3366 -2.6323 31 1 3.5126 -2.1963 -4.2408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695896283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -32.903747 kcal Electronic energy + Delta-G solvation = -15001.958237 eV Core-core repulsion = 12475.470742 eV Total energy + Delta-G solvation = -2526.487496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50880 -39.24015 -35.70232 -35.31346 -33.39210 -32.27077 -29.60164 -29.36597 -25.42259 -24.61520 -23.56493 -21.65362 -19.18043 -18.51837 -18.34260 -18.01338 -16.65063 -16.24842 -15.98418 -15.44708 -15.22994 -14.88414 -14.54977 -13.99956 -13.75172 -13.36969 -13.24306 -13.04130 -12.67739 -12.59162 -12.30667 -11.89945 -11.71381 -11.30404 -11.13619 -10.61780 -10.48933 -10.10583 -8.32495 -8.22025 -6.30669 0.43852 0.51601 1.36834 1.37803 1.48877 2.38615 2.40416 2.70672 3.02173 3.12533 3.77982 4.00158 4.09001 4.21295 4.31364 4.41433 4.48788 4.66587 4.80991 5.01213 5.13597 5.19951 5.32368 5.40679 5.46352 5.72759 5.76241 6.16744 6.24535 6.66342 6.75273 6.81759 7.35891 7.36951 8.89361 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.008181 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.068508 B = 3421.678844 C = 3841.536574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.063 0.937 4 C 0.029 3.971 5 C -0.528 4.528 6 H 0.048 0.952 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.272 1.272 13 O -0.315 6.315 14 C 0.003 3.997 15 C -0.142 4.142 16 C -0.190 4.190 17 C 0.091 3.909 18 N -0.536 5.536 19 C 0.364 3.636 20 N -0.844 5.844 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.001 0.999 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.146 0.854 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.413 0.587 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 6.242 -12.376 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.566 4.566 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.197 1.197 13 O -0.228 6.228 14 C -0.049 4.049 15 C -0.168 4.168 16 C -0.212 4.212 17 C -0.064 4.064 18 N -0.256 5.256 19 C 0.125 3.875 20 N -0.390 5.390 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.182 0.818 29 H 0.205 0.795 30 H 0.243 0.757 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.754 5.597 -12.886 14.542 hybrid contribution 0.621 -0.095 1.304 1.447 sum -3.132 5.502 -11.582 13.200 Atomic orbital electron populations 1.22300 0.94269 1.02759 1.03069 1.22531 0.93796 0.96020 0.83510 0.91934 1.19106 0.95349 0.95230 0.91061 1.21418 0.93266 1.34115 1.07788 0.93342 1.25802 1.03141 0.94897 0.95356 1.70061 1.37393 1.36682 1.12835 0.85574 0.80105 0.77946 0.78204 1.19599 1.20518 1.19722 1.86108 1.81910 1.38338 1.16426 1.19783 1.03581 0.93448 0.88057 1.21805 1.01448 0.92743 1.00830 1.21987 1.04187 1.02551 0.92475 1.22826 0.94643 0.89109 0.99818 1.67258 1.23951 1.09873 1.24478 1.18057 0.93591 0.88049 0.87842 1.42096 1.69343 1.09667 1.17919 0.90078 0.91190 0.92560 0.98102 0.95732 0.92691 0.83623 0.81773 0.79483 0.75691 0.76183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 9.19 71.98 0.66 -4.74 16 2 C 0.10 3.97 2.17 30.59 0.07 4.03 16 3 H 0.06 2.48 6.35 -2.39 -0.02 2.46 16 4 C 0.03 1.52 4.68 29.85 0.14 1.66 16 5 C -0.53 -29.95 8.88 25.60 0.23 -29.73 16 6 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 9 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 O -0.31 -13.13 8.80 -93.69 -0.82 -13.95 16 14 C 0.00 0.12 6.64 22.70 0.15 0.27 16 15 C -0.14 -4.33 8.34 22.53 0.19 -4.14 16 16 C -0.19 -4.61 10.10 22.36 0.23 -4.38 16 17 C 0.09 2.28 11.17 84.61 0.95 3.23 16 18 N -0.54 -16.82 10.39 -192.79 -2.00 -18.82 16 19 C 0.36 12.61 7.77 133.11 1.03 13.65 16 20 N -0.84 -26.07 9.08 -55.07 -0.50 -26.57 16 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.07 1.95 6.94 -2.39 -0.02 1.93 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.02 1.30 8.14 -2.38 -0.02 1.29 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.15 4.09 5.58 -2.91 -0.02 4.07 16 28 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.41 13.25 8.17 -92.71 -0.76 12.50 16 31 H 0.41 10.44 8.95 -92.70 -0.83 9.61 16 Total: -1.00 -66.53 267.55 2.65 -63.88 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.43 Total: 23.37 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.10 Total: -19.35 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -2.22 Total: -100.78 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.82 Total: -13.95 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.53 2.65 -63.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695896283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.975 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds