Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46951 * 166.29460 * 3 2 1 5 5 O 1.21275 * 120.00197 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3 8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4 9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6 10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7 11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8 12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8 13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9 14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9 15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10 17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10 18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7 19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3 20 20 H 4.43229 * 5.59249 * 180.02562 * 4 1 2 21 21 H 1.09008 * 109.47457 * 46.29657 * 3 2 1 22 22 H 1.08996 * 109.47490 * 286.29760 * 3 2 1 23 23 H 1.09001 * 109.60759 * 115.50025 * 7 6 4 24 24 H 1.08998 * 109.74755 * 355.07824 * 7 6 4 25 25 H 1.08993 * 109.61301 * 190.83327 * 8 7 6 26 26 H 1.09004 * 109.75220 * 70.40370 * 8 7 6 27 27 H 0.97004 * 120.00510 * 180.02562 * 13 12 10 28 28 H 1.08995 * 109.60931 * 64.27031 * 18 9 8 29 29 H 1.09004 * 109.60392 * 184.78099 * 18 9 8 30 30 H 1.09002 * 109.60509 * 244.49992 * 19 6 4 31 31 H 1.09000 * 109.60856 * 4.83277 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1476 1.3813 -0.3367 5 8 2.3592 2.2764 -0.5555 6 7 4.4726 1.6210 -0.3955 7 6 4.9763 2.9623 -0.7231 8 6 5.9222 2.8505 -1.9252 9 7 6.8892 1.7752 -1.6634 10 6 8.2354 2.0187 -1.7241 11 1 8.9177 1.4318 -1.1270 12 6 8.7235 3.0159 -2.5572 13 7 7.9690 3.4936 -3.5240 14 14 10.4514 3.6800 -2.3060 15 1 11.0886 2.9815 -1.1609 16 1 11.2536 3.4495 -3.5343 17 1 10.3857 5.1364 -2.0237 18 6 6.3856 0.4327 -1.3413 19 6 5.4397 0.5456 -0.1343 20 1 -1.0503 -0.0004 0.0003 21 1 3.0097 -0.7093 -0.7430 22 1 3.0095 -0.2876 0.9863 23 1 5.5171 3.3688 0.1315 24 1 4.1422 3.6178 -0.9736 25 1 6.4517 3.7932 -2.0629 26 1 5.3504 2.6176 -2.8235 27 1 8.3102 4.1902 -4.1064 28 1 5.8440 0.0301 -2.1972 29 1 7.2213 -0.2217 -1.0932 30 1 6.0136 0.7797 0.7623 31 1 4.9100 -0.3966 0.0061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700848402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = 49.386638 kcal Electronic energy + Delta-G solvation = -15082.902756 eV Core-core repulsion = 12559.983639 eV Total energy + Delta-G solvation = -2522.919117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65152 -36.86145 -33.95285 -33.72781 -31.21976 -30.64949 -28.80303 -26.72165 -23.69151 -22.84027 -20.85336 -18.96814 -17.81758 -17.20745 -16.16536 -15.42955 -15.32013 -14.81031 -13.83249 -13.69422 -13.51567 -13.34485 -13.19926 -13.03457 -12.15030 -11.75202 -11.25441 -10.86695 -10.76633 -10.57816 -10.48595 -10.25878 -10.17274 -9.99269 -9.86289 -9.33831 -8.62004 -8.26971 -6.74146 -5.87093 -3.32847 2.73522 2.82718 3.02770 3.32748 3.40783 3.42591 3.58600 4.38906 4.42337 4.88182 5.21716 5.30335 5.33485 5.41087 5.68696 5.73002 5.85145 5.93958 6.13384 6.31738 6.36257 6.47624 6.66640 6.83732 7.23596 7.52765 7.66931 7.70801 7.88339 8.33840 8.52479 9.09561 9.72373 10.28955 11.20356 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.067193 B = 0.006467 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.608282 B = 4328.352752 C = 4529.873544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.030 4.030 4 C 0.511 3.489 5 O -0.548 6.548 6 N -0.597 5.597 7 C 0.088 3.912 8 C 0.158 3.842 9 N -0.591 5.591 10 C -0.259 4.259 11 H 0.069 0.931 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.288 1.288 18 C 0.130 3.870 19 C 0.086 3.914 20 H 0.218 0.782 21 H 0.115 0.885 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.024 0.976 27 H 0.255 0.745 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -7.056 7.147 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C -0.069 4.069 4 C 0.298 3.702 5 O -0.426 6.426 6 N -0.329 5.329 7 C -0.036 4.036 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.388 4.388 11 H 0.086 0.914 12 C -0.195 4.195 13 N -0.544 5.544 14 Si 0.734 3.266 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.214 1.214 18 C 0.002 3.998 19 C -0.038 4.038 20 H 0.235 0.765 21 H 0.133 0.867 22 H 0.130 0.870 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.368 -6.444 6.899 11.976 hybrid contribution 0.800 0.311 -0.002 0.858 sum -6.568 -6.133 6.898 11.328 Atomic orbital electron populations 1.24753 0.95756 1.00150 1.00824 1.22195 0.93631 1.00585 1.00636 1.18677 0.86648 0.96917 1.04660 1.20250 0.82340 0.89773 0.77857 1.90673 1.54915 1.46540 1.50521 1.48063 1.04616 1.12237 1.68019 1.22504 0.98367 0.82288 1.00397 1.21197 0.89345 0.95003 0.91321 1.44024 1.02621 1.02983 1.81794 1.19233 0.82463 1.17978 1.19115 0.91373 1.25093 0.97888 1.01353 0.95137 1.70028 1.36983 1.30141 1.17286 0.86208 0.84070 0.78800 0.77568 1.20168 1.21665 1.21445 1.21366 0.95450 0.89399 0.93559 1.22507 0.91717 0.88964 1.00640 0.76547 0.86733 0.86958 0.92108 0.90142 0.88224 0.95822 0.93458 0.95791 0.91363 0.91345 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 19.25 29.55 0.57 -1.97 16 2 C -0.17 -2.45 12.58 -37.13 -0.47 -2.92 16 3 C -0.03 -0.39 4.53 -30.67 -0.14 -0.53 16 4 C 0.51 9.02 7.68 -10.98 -0.08 8.93 16 5 O -0.55 -11.80 15.44 5.56 0.09 -11.71 16 6 N -0.60 -10.68 2.95 -172.24 -0.51 -11.19 16 7 C 0.09 1.77 6.59 -3.60 -0.02 1.74 16 8 C 0.16 3.74 5.51 -3.60 -0.02 3.72 16 9 N -0.59 -14.20 2.96 -171.80 -0.51 -14.71 16 10 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 11 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 12 C 0.00 0.12 4.91 -17.44 -0.09 0.03 16 13 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16 14 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 C 0.13 2.47 6.70 -3.39 -0.02 2.45 16 19 C 0.09 1.33 6.52 -3.39 -0.02 1.30 16 20 H 0.22 1.90 7.80 -54.08 -0.42 1.47 16 21 H 0.11 1.25 7.72 -51.92 -0.40 0.85 16 22 H 0.11 1.13 7.91 -51.93 -0.41 0.72 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.65 7.00 -51.93 -0.36 1.28 16 25 H 0.10 2.61 6.00 -51.93 -0.31 2.30 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 LS Contribution 266.34 15.07 4.01 4.01 Total: -1.00 -32.18 266.34 -5.63 -37.81 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.87 Total: -1.06 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.44 Total: 5.84 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.40 Total: -50.90 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.18 -5.63 -37.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700848402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.200 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds