Wall clock time and date at job start Mon Mar 30 2020 02:40:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17401 * 1
3 3 C 1.47193 * 179.97438 * 2 1
4 4 C 1.50707 * 109.46951 * 166.29460 * 3 2 1
5 5 O 1.21275 * 120.00197 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2
7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3
8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4
9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6
10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7
11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8
12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8
13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9
14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9
15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10
16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10
17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10
18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7
19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3
20 20 H 4.43229 * 5.59249 * 180.02562 * 4 1 2
21 21 H 1.09008 * 109.47457 * 46.29657 * 3 2 1
22 22 H 1.08996 * 109.47490 * 286.29760 * 3 2 1
23 23 H 1.09001 * 109.60759 * 115.50025 * 7 6 4
24 24 H 1.08998 * 109.74755 * 355.07824 * 7 6 4
25 25 H 1.08993 * 109.61301 * 190.83327 * 8 7 6
26 26 H 1.09004 * 109.75220 * 70.40370 * 8 7 6
27 27 H 0.97004 * 120.00510 * 180.02562 * 13 12 10
28 28 H 1.08995 * 109.60931 * 64.27031 * 18 9 8
29 29 H 1.09004 * 109.60392 * 184.78099 * 18 9 8
30 30 H 1.09002 * 109.60509 * 244.49992 * 19 6 4
31 31 H 1.09000 * 109.60856 * 4.83277 * 19 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 6 3.1476 1.3813 -0.3367
5 8 2.3592 2.2764 -0.5555
6 7 4.4726 1.6210 -0.3955
7 6 4.9763 2.9623 -0.7231
8 6 5.9222 2.8505 -1.9252
9 7 6.8892 1.7752 -1.6634
10 6 8.2354 2.0187 -1.7241
11 1 8.9177 1.4318 -1.1270
12 6 8.7235 3.0159 -2.5572
13 7 7.9690 3.4936 -3.5240
14 14 10.4514 3.6800 -2.3060
15 1 11.0886 2.9815 -1.1609
16 1 11.2536 3.4495 -3.5343
17 1 10.3857 5.1364 -2.0237
18 6 6.3856 0.4327 -1.3413
19 6 5.4397 0.5456 -0.1343
20 1 -1.0503 -0.0004 0.0003
21 1 3.0097 -0.7093 -0.7430
22 1 3.0095 -0.2876 0.9863
23 1 5.5171 3.3688 0.1315
24 1 4.1422 3.6178 -0.9736
25 1 6.4517 3.7932 -2.0629
26 1 5.3504 2.6176 -2.8235
27 1 8.3102 4.1902 -4.1064
28 1 5.8440 0.0301 -2.1972
29 1 7.2213 -0.2217 -1.0932
30 1 6.0136 0.7797 0.7623
31 1 4.9100 -0.3966 0.0061
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000700848402.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:27
Heat of formation + Delta-G solvation = 49.386638 kcal
Electronic energy + Delta-G solvation = -15082.902756 eV
Core-core repulsion = 12559.983639 eV
Total energy + Delta-G solvation = -2522.919117 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.65152 -36.86145 -33.95285 -33.72781 -31.21976 -30.64949 -28.80303 -26.72165
-23.69151 -22.84027 -20.85336 -18.96814 -17.81758 -17.20745 -16.16536 -15.42955
-15.32013 -14.81031 -13.83249 -13.69422 -13.51567 -13.34485 -13.19926 -13.03457
-12.15030 -11.75202 -11.25441 -10.86695 -10.76633 -10.57816 -10.48595 -10.25878
-10.17274 -9.99269 -9.86289 -9.33831 -8.62004 -8.26971 -6.74146 -5.87093
-3.32847 2.73522 2.82718 3.02770 3.32748 3.40783 3.42591 3.58600
4.38906 4.42337 4.88182 5.21716 5.30335 5.33485 5.41087 5.68696
5.73002 5.85145 5.93958 6.13384 6.31738 6.36257 6.47624 6.66640
6.83732 7.23596 7.52765 7.66931 7.70801 7.88339 8.33840 8.52479
9.09561 9.72373 10.28955 11.20356
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.067193 B = 0.006467 C = 0.006180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 416.608282 B = 4328.352752 C = 4529.873544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.170 4.170
3 C -0.030 4.030
4 C 0.511 3.489
5 O -0.548 6.548
6 N -0.597 5.597
7 C 0.088 3.912
8 C 0.158 3.842
9 N -0.591 5.591
10 C -0.259 4.259
11 H 0.069 0.931
12 C 0.004 3.996
13 N -0.901 5.901
14 Si 0.904 3.096
15 H -0.277 1.277
16 H -0.290 1.290
17 H -0.288 1.288
18 C 0.130 3.870
19 C 0.086 3.914
20 H 0.218 0.782
21 H 0.115 0.885
22 H 0.113 0.887
23 H 0.061 0.939
24 H 0.080 0.920
25 H 0.100 0.900
26 H 0.024 0.976
27 H 0.255 0.745
28 H 0.024 0.976
29 H 0.068 0.932
30 H 0.068 0.932
31 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.052 -7.056 7.147 12.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.170 4.170
3 C -0.069 4.069
4 C 0.298 3.702
5 O -0.426 6.426
6 N -0.329 5.329
7 C -0.036 4.036
8 C 0.031 3.969
9 N -0.314 5.314
10 C -0.388 4.388
11 H 0.086 0.914
12 C -0.195 4.195
13 N -0.544 5.544
14 Si 0.734 3.266
15 H -0.202 1.202
16 H -0.217 1.217
17 H -0.214 1.214
18 C 0.002 3.998
19 C -0.038 4.038
20 H 0.235 0.765
21 H 0.133 0.867
22 H 0.130 0.870
23 H 0.079 0.921
24 H 0.099 0.901
25 H 0.118 0.882
26 H 0.042 0.958
27 H 0.065 0.935
28 H 0.042 0.958
29 H 0.086 0.914
30 H 0.087 0.913
31 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -7.368 -6.444 6.899 11.976
hybrid contribution 0.800 0.311 -0.002 0.858
sum -6.568 -6.133 6.898 11.328
Atomic orbital electron populations
1.24753 0.95756 1.00150 1.00824 1.22195 0.93631 1.00585 1.00636
1.18677 0.86648 0.96917 1.04660 1.20250 0.82340 0.89773 0.77857
1.90673 1.54915 1.46540 1.50521 1.48063 1.04616 1.12237 1.68019
1.22504 0.98367 0.82288 1.00397 1.21197 0.89345 0.95003 0.91321
1.44024 1.02621 1.02983 1.81794 1.19233 0.82463 1.17978 1.19115
0.91373 1.25093 0.97888 1.01353 0.95137 1.70028 1.36983 1.30141
1.17286 0.86208 0.84070 0.78800 0.77568 1.20168 1.21665 1.21445
1.21366 0.95450 0.89399 0.93559 1.22507 0.91717 0.88964 1.00640
0.76547 0.86733 0.86958 0.92108 0.90142 0.88224 0.95822 0.93458
0.95791 0.91363 0.91345 0.90828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.53 19.25 29.55 0.57 -1.97 16
2 C -0.17 -2.45 12.58 -37.13 -0.47 -2.92 16
3 C -0.03 -0.39 4.53 -30.67 -0.14 -0.53 16
4 C 0.51 9.02 7.68 -10.98 -0.08 8.93 16
5 O -0.55 -11.80 15.44 5.56 0.09 -11.71 16
6 N -0.60 -10.68 2.95 -172.24 -0.51 -11.19 16
7 C 0.09 1.77 6.59 -3.60 -0.02 1.74 16
8 C 0.16 3.74 5.51 -3.60 -0.02 3.72 16
9 N -0.59 -14.20 2.96 -171.80 -0.51 -14.71 16
10 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16
11 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16
12 C 0.00 0.12 4.91 -17.44 -0.09 0.03 16
13 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16
14 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16
15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16
18 C 0.13 2.47 6.70 -3.39 -0.02 2.45 16
19 C 0.09 1.33 6.52 -3.39 -0.02 1.30 16
20 H 0.22 1.90 7.80 -54.08 -0.42 1.47 16
21 H 0.11 1.25 7.72 -51.92 -0.40 0.85 16
22 H 0.11 1.13 7.91 -51.93 -0.41 0.72 16
23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
24 H 0.08 1.65 7.00 -51.93 -0.36 1.28 16
25 H 0.10 2.61 6.00 -51.93 -0.31 2.30 16
26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16
27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16
30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
31 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16
LS Contribution 266.34 15.07 4.01 4.01
Total: -1.00 -32.18 266.34 -5.63 -37.81
By element:
Atomic # 1 Polarization: 2.81 SS G_CDS: -3.87 Total: -1.06 kcal
Atomic # 6 Polarization: 6.28 SS G_CDS: -0.44 Total: 5.84 kcal
Atomic # 7 Polarization: -50.50 SS G_CDS: -0.40 Total: -50.90 kcal
Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal
Total LS contribution 4.01 Total: 4.01 kcal
Total: -32.18 -5.63 -37.81 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700848402.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.200 kcal
(2) G-P(sol) polarization free energy of solvation -32.182 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds