Wall clock time and date at job start Mon Mar 30 2020 02:40:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17401 * 1
3 3 C 1.47193 * 179.97438 * 2 1
4 4 C 1.50707 * 109.46951 * 166.29460 * 3 2 1
5 5 O 1.21275 * 120.00197 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2
7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3
8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4
9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6
10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7
11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8
12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8
13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9
14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9
15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10
16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10
17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10
18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7
19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3
20 20 H 4.43229 * 5.59249 * 180.02562 * 4 1 2
21 21 H 1.09008 * 109.47457 * 46.29657 * 3 2 1
22 22 H 1.08996 * 109.47490 * 286.29760 * 3 2 1
23 23 H 1.09001 * 109.60759 * 115.50025 * 7 6 4
24 24 H 1.08998 * 109.74755 * 355.07824 * 7 6 4
25 25 H 1.08993 * 109.61301 * 190.83327 * 8 7 6
26 26 H 1.09004 * 109.75220 * 70.40370 * 8 7 6
27 27 H 0.97004 * 120.00510 * 180.02562 * 13 12 10
28 28 H 1.08995 * 109.60931 * 64.27031 * 18 9 8
29 29 H 1.09004 * 109.60392 * 184.78099 * 18 9 8
30 30 H 1.09002 * 109.60509 * 244.49992 * 19 6 4
31 31 H 1.09000 * 109.60856 * 4.83277 * 19 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 6 3.1476 1.3813 -0.3367
5 8 2.3592 2.2764 -0.5555
6 7 4.4726 1.6210 -0.3955
7 6 4.9763 2.9623 -0.7231
8 6 5.9222 2.8505 -1.9252
9 7 6.8892 1.7752 -1.6634
10 6 8.2354 2.0187 -1.7241
11 1 8.9177 1.4318 -1.1270
12 6 8.7235 3.0159 -2.5572
13 7 7.9690 3.4936 -3.5240
14 14 10.4514 3.6800 -2.3060
15 1 11.0886 2.9815 -1.1609
16 1 11.2536 3.4495 -3.5343
17 1 10.3857 5.1364 -2.0237
18 6 6.3856 0.4327 -1.3413
19 6 5.4397 0.5456 -0.1343
20 1 -1.0503 -0.0004 0.0003
21 1 3.0097 -0.7093 -0.7430
22 1 3.0095 -0.2876 0.9863
23 1 5.5171 3.3688 0.1315
24 1 4.1422 3.6178 -0.9736
25 1 6.4517 3.7932 -2.0629
26 1 5.3504 2.6176 -2.8235
27 1 8.3102 4.1902 -4.1064
28 1 5.8440 0.0301 -2.1972
29 1 7.2213 -0.2217 -1.0932
30 1 6.0136 0.7797 0.7623
31 1 4.9100 -0.3966 0.0061
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700848402.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:27
Heat of formation + Delta-G solvation = 28.168232 kcal
Electronic energy + Delta-G solvation = -15083.822855 eV
Core-core repulsion = 12559.983639 eV
Total energy + Delta-G solvation = -2523.839216 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.07767 -38.48469 -35.65500 -34.80234 -33.06889 -32.17879 -30.03908 -28.41328
-25.45521 -24.43142 -22.44175 -20.46826 -18.92451 -18.77163 -17.80953 -16.80091
-16.73156 -16.58543 -15.48101 -15.35156 -15.01774 -14.77933 -14.51857 -14.44635
-13.55690 -13.35357 -13.11846 -12.67656 -12.46482 -12.24513 -12.02263 -11.85966
-11.65828 -11.56518 -11.13679 -10.72182 -10.61387 -9.83304 -8.65978 -7.88297
-5.37152 1.47722 1.50670 1.56962 1.60618 1.63711 1.94109 2.31015
2.52500 3.27183 3.46492 3.61171 3.71798 4.26124 4.30947 4.39101
4.47132 4.50132 4.57651 4.68036 4.80788 4.87726 5.07530 5.12757
5.27602 5.45592 5.61696 5.68185 6.35857 6.47983 6.74397 7.09588
7.15286 7.79900 8.32931 9.17229
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.067193 B = 0.006467 C = 0.006180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 416.608282 B = 4328.352752 C = 4529.873544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.216 4.216
3 C -0.021 4.021
4 C 0.506 3.494
5 O -0.595 6.595
6 N -0.601 5.601
7 C 0.102 3.898
8 C 0.170 3.830
9 N -0.610 5.610
10 C -0.261 4.261
11 H 0.078 0.922
12 C -0.052 4.052
13 N -0.939 5.939
14 Si 0.968 3.032
15 H -0.261 1.261
16 H -0.295 1.295
17 H -0.293 1.293
18 C 0.122 3.878
19 C 0.095 3.905
20 H 0.248 0.752
21 H 0.141 0.859
22 H 0.150 0.850
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.068 0.932
26 H -0.009 1.009
27 H 0.250 0.750
28 H 0.018 0.982
29 H 0.083 0.917
30 H 0.079 0.921
31 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.210 -9.079 9.007 14.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.217 4.217
3 C -0.059 4.059
4 C 0.296 3.704
5 O -0.476 6.476
6 N -0.333 5.333
7 C -0.022 4.022
8 C 0.043 3.957
9 N -0.333 5.333
10 C -0.391 4.391
11 H 0.096 0.904
12 C -0.247 4.247
13 N -0.585 5.585
14 Si 0.796 3.204
15 H -0.185 1.185
16 H -0.222 1.222
17 H -0.220 1.220
18 C -0.004 4.004
19 C -0.028 4.028
20 H 0.264 0.736
21 H 0.158 0.842
22 H 0.167 0.833
23 H 0.085 0.915
24 H 0.088 0.912
25 H 0.086 0.914
26 H 0.009 0.991
27 H 0.059 0.941
28 H 0.036 0.964
29 H 0.102 0.898
30 H 0.098 0.902
31 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -7.522 -8.525 8.796 14.375
hybrid contribution 0.769 0.883 -0.592 1.313
sum -6.753 -7.642 8.203 13.088
Atomic orbital electron populations
1.25691 0.96889 0.98404 0.99609 1.22792 0.94787 1.02125 1.01950
1.18763 0.86147 0.93668 1.07337 1.21148 0.81526 0.91333 0.76388
1.90650 1.55967 1.48553 1.52426 1.48148 1.05533 1.11692 1.67903
1.22071 0.97145 0.84177 0.98833 1.20865 0.89336 0.93830 0.91700
1.44285 1.02107 1.05021 1.81927 1.19633 0.83737 1.17494 1.18215
0.90420 1.25859 1.01460 1.02164 0.95210 1.70188 1.38809 1.30938
1.18588 0.85197 0.79937 0.77714 0.77510 1.18489 1.22222 1.22024
1.21625 0.96794 0.87035 0.94950 1.22584 0.91027 0.90414 0.98758
0.73563 0.84175 0.83260 0.91466 0.91157 0.91398 0.99100 0.94116
0.96425 0.89838 0.90236 0.85543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.37 19.25 74.32 1.43 -2.94 16
2 C -0.22 -5.66 12.58 31.12 0.39 -5.27 16
3 C -0.02 -0.46 4.53 28.04 0.13 -0.34 16
4 C 0.51 16.92 7.68 87.66 0.67 17.60 16
5 O -0.59 -25.42 15.44 -3.02 -0.05 -25.46 16
6 N -0.60 -20.39 2.95 -817.25 -2.41 -22.80 16
7 C 0.10 4.15 6.59 86.41 0.57 4.72 16
8 C 0.17 8.30 5.51 86.41 0.48 8.78 16
9 N -0.61 -29.16 2.96 -697.46 -2.06 -31.23 16
10 C -0.26 -13.60 9.57 84.03 0.80 -12.80 16
11 H 0.08 3.84 7.89 -2.91 -0.02 3.81 16
12 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16
13 N -0.94 -55.25 11.20 21.65 0.24 -55.01 16
14 Si 0.97 43.59 29.59 68.60 2.03 45.62 16
15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16
16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16
17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
18 C 0.12 4.39 6.70 86.55 0.58 4.97 16
19 C 0.10 2.57 6.52 86.55 0.56 3.13 16
20 H 0.25 3.55 7.80 -4.40 -0.03 3.52 16
21 H 0.14 2.40 7.72 -2.38 -0.02 2.38 16
22 H 0.15 2.20 7.91 -2.39 -0.02 2.18 16
23 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16
24 H 0.07 2.98 7.00 -2.39 -0.02 2.96 16
25 H 0.07 3.74 6.00 -2.39 -0.01 3.73 16
26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16
27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16
28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16
29 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16
30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
31 H 0.13 2.11 5.91 -2.39 -0.01 2.10 16
Total: -1.00 -72.22 266.34 4.90 -67.33
By element:
Atomic # 1 Polarization: 4.98 SS G_CDS: 1.11 Total: 6.09 kcal
Atomic # 6 Polarization: 9.43 SS G_CDS: 6.03 Total: 15.46 kcal
Atomic # 7 Polarization: -104.81 SS G_CDS: -4.23 Total: -109.04 kcal
Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal
Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal
Total: -72.22 4.90 -67.33 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700848402.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.494 kcal
(2) G-P(sol) polarization free energy of solvation -72.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds