Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46951 * 166.29460 * 3 2 1 5 5 O 1.21275 * 120.00197 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3 8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4 9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6 10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7 11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8 12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8 13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9 14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9 15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10 17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10 18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7 19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3 20 20 H 4.43229 * 5.59249 * 180.02562 * 4 1 2 21 21 H 1.09008 * 109.47457 * 46.29657 * 3 2 1 22 22 H 1.08996 * 109.47490 * 286.29760 * 3 2 1 23 23 H 1.09001 * 109.60759 * 115.50025 * 7 6 4 24 24 H 1.08998 * 109.74755 * 355.07824 * 7 6 4 25 25 H 1.08993 * 109.61301 * 190.83327 * 8 7 6 26 26 H 1.09004 * 109.75220 * 70.40370 * 8 7 6 27 27 H 0.97004 * 120.00510 * 180.02562 * 13 12 10 28 28 H 1.08995 * 109.60931 * 64.27031 * 18 9 8 29 29 H 1.09004 * 109.60392 * 184.78099 * 18 9 8 30 30 H 1.09002 * 109.60509 * 244.49992 * 19 6 4 31 31 H 1.09000 * 109.60856 * 4.83277 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1476 1.3813 -0.3367 5 8 2.3592 2.2764 -0.5555 6 7 4.4726 1.6210 -0.3955 7 6 4.9763 2.9623 -0.7231 8 6 5.9222 2.8505 -1.9252 9 7 6.8892 1.7752 -1.6634 10 6 8.2354 2.0187 -1.7241 11 1 8.9177 1.4318 -1.1270 12 6 8.7235 3.0159 -2.5572 13 7 7.9690 3.4936 -3.5240 14 14 10.4514 3.6800 -2.3060 15 1 11.0886 2.9815 -1.1609 16 1 11.2536 3.4495 -3.5343 17 1 10.3857 5.1364 -2.0237 18 6 6.3856 0.4327 -1.3413 19 6 5.4397 0.5456 -0.1343 20 1 -1.0503 -0.0004 0.0003 21 1 3.0097 -0.7093 -0.7430 22 1 3.0095 -0.2876 0.9863 23 1 5.5171 3.3688 0.1315 24 1 4.1422 3.6178 -0.9736 25 1 6.4517 3.7932 -2.0629 26 1 5.3504 2.6176 -2.8235 27 1 8.3102 4.1902 -4.1064 28 1 5.8440 0.0301 -2.1972 29 1 7.2213 -0.2217 -1.0932 30 1 6.0136 0.7797 0.7623 31 1 4.9100 -0.3966 0.0061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700848402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = 28.168232 kcal Electronic energy + Delta-G solvation = -15083.822855 eV Core-core repulsion = 12559.983639 eV Total energy + Delta-G solvation = -2523.839216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07767 -38.48469 -35.65500 -34.80234 -33.06889 -32.17879 -30.03908 -28.41328 -25.45521 -24.43142 -22.44175 -20.46826 -18.92451 -18.77163 -17.80953 -16.80091 -16.73156 -16.58543 -15.48101 -15.35156 -15.01774 -14.77933 -14.51857 -14.44635 -13.55690 -13.35357 -13.11846 -12.67656 -12.46482 -12.24513 -12.02263 -11.85966 -11.65828 -11.56518 -11.13679 -10.72182 -10.61387 -9.83304 -8.65978 -7.88297 -5.37152 1.47722 1.50670 1.56962 1.60618 1.63711 1.94109 2.31015 2.52500 3.27183 3.46492 3.61171 3.71798 4.26124 4.30947 4.39101 4.47132 4.50132 4.57651 4.68036 4.80788 4.87726 5.07530 5.12757 5.27602 5.45592 5.61696 5.68185 6.35857 6.47983 6.74397 7.09588 7.15286 7.79900 8.32931 9.17229 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.067193 B = 0.006467 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.608282 B = 4328.352752 C = 4529.873544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.216 4.216 3 C -0.021 4.021 4 C 0.506 3.494 5 O -0.595 6.595 6 N -0.601 5.601 7 C 0.102 3.898 8 C 0.170 3.830 9 N -0.610 5.610 10 C -0.261 4.261 11 H 0.078 0.922 12 C -0.052 4.052 13 N -0.939 5.939 14 Si 0.968 3.032 15 H -0.261 1.261 16 H -0.295 1.295 17 H -0.293 1.293 18 C 0.122 3.878 19 C 0.095 3.905 20 H 0.248 0.752 21 H 0.141 0.859 22 H 0.150 0.850 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.068 0.932 26 H -0.009 1.009 27 H 0.250 0.750 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -9.079 9.007 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.217 4.217 3 C -0.059 4.059 4 C 0.296 3.704 5 O -0.476 6.476 6 N -0.333 5.333 7 C -0.022 4.022 8 C 0.043 3.957 9 N -0.333 5.333 10 C -0.391 4.391 11 H 0.096 0.904 12 C -0.247 4.247 13 N -0.585 5.585 14 Si 0.796 3.204 15 H -0.185 1.185 16 H -0.222 1.222 17 H -0.220 1.220 18 C -0.004 4.004 19 C -0.028 4.028 20 H 0.264 0.736 21 H 0.158 0.842 22 H 0.167 0.833 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.009 0.991 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.522 -8.525 8.796 14.375 hybrid contribution 0.769 0.883 -0.592 1.313 sum -6.753 -7.642 8.203 13.088 Atomic orbital electron populations 1.25691 0.96889 0.98404 0.99609 1.22792 0.94787 1.02125 1.01950 1.18763 0.86147 0.93668 1.07337 1.21148 0.81526 0.91333 0.76388 1.90650 1.55967 1.48553 1.52426 1.48148 1.05533 1.11692 1.67903 1.22071 0.97145 0.84177 0.98833 1.20865 0.89336 0.93830 0.91700 1.44285 1.02107 1.05021 1.81927 1.19633 0.83737 1.17494 1.18215 0.90420 1.25859 1.01460 1.02164 0.95210 1.70188 1.38809 1.30938 1.18588 0.85197 0.79937 0.77714 0.77510 1.18489 1.22222 1.22024 1.21625 0.96794 0.87035 0.94950 1.22584 0.91027 0.90414 0.98758 0.73563 0.84175 0.83260 0.91466 0.91157 0.91398 0.99100 0.94116 0.96425 0.89838 0.90236 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.37 19.25 74.32 1.43 -2.94 16 2 C -0.22 -5.66 12.58 31.12 0.39 -5.27 16 3 C -0.02 -0.46 4.53 28.04 0.13 -0.34 16 4 C 0.51 16.92 7.68 87.66 0.67 17.60 16 5 O -0.59 -25.42 15.44 -3.02 -0.05 -25.46 16 6 N -0.60 -20.39 2.95 -817.25 -2.41 -22.80 16 7 C 0.10 4.15 6.59 86.41 0.57 4.72 16 8 C 0.17 8.30 5.51 86.41 0.48 8.78 16 9 N -0.61 -29.16 2.96 -697.46 -2.06 -31.23 16 10 C -0.26 -13.60 9.57 84.03 0.80 -12.80 16 11 H 0.08 3.84 7.89 -2.91 -0.02 3.81 16 12 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 13 N -0.94 -55.25 11.20 21.65 0.24 -55.01 16 14 Si 0.97 43.59 29.59 68.60 2.03 45.62 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 C 0.12 4.39 6.70 86.55 0.58 4.97 16 19 C 0.10 2.57 6.52 86.55 0.56 3.13 16 20 H 0.25 3.55 7.80 -4.40 -0.03 3.52 16 21 H 0.14 2.40 7.72 -2.38 -0.02 2.38 16 22 H 0.15 2.20 7.91 -2.39 -0.02 2.18 16 23 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.07 2.98 7.00 -2.39 -0.02 2.96 16 25 H 0.07 3.74 6.00 -2.39 -0.01 3.73 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.13 2.11 5.91 -2.39 -0.01 2.10 16 Total: -1.00 -72.22 266.34 4.90 -67.33 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.11 Total: 6.09 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.03 Total: 15.46 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.23 Total: -109.04 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.22 4.90 -67.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700848402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.494 kcal (2) G-P(sol) polarization free energy of solvation -72.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds