Wall clock time and date at job start Mon Mar 30 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 N 1.46503 * 109.46773 * 119.99849 * 2 1 3 5 5 C 1.36877 * 120.00020 * 126.09722 * 4 2 1 6 6 H 1.07995 * 120.00175 * 136.24047 * 5 4 2 7 7 C 1.39010 * 119.99635 * 316.23967 * 5 4 2 8 8 N 1.31403 * 120.00179 * 3.13439 * 7 5 4 9 9 Si 1.86801 * 119.99993 * 183.13551 * 7 5 4 10 10 H 1.48495 * 109.47041 * 89.99810 * 9 7 5 11 11 H 1.48501 * 109.47151 * 209.99933 * 9 7 5 12 12 H 1.48496 * 109.47020 * 329.99730 * 9 7 5 13 13 C 1.34780 * 120.00043 * 306.09061 * 4 2 1 14 14 O 1.21738 * 119.99880 * 354.04201 * 13 4 2 15 15 C 1.46545 * 119.99685 * 174.04306 * 13 4 2 16 16 C 1.37997 * 126.23465 * 172.26268 * 15 13 4 17 17 C 1.39809 * 107.08040 * 179.87860 * 16 15 13 18 18 C 1.35485 * 107.87864 * 0.38067 * 17 16 15 19 19 N 1.35589 * 108.88425 * 359.76651 * 18 17 16 20 20 H 0.96994 * 125.68175 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47008 * 306.28401 * 1 2 3 22 22 H 1.09004 * 109.47051 * 66.28262 * 1 2 3 23 23 H 1.08996 * 109.47205 * 186.27803 * 1 2 3 24 24 H 1.09001 * 109.47395 * 239.99724 * 2 1 3 25 25 H 1.08997 * 109.47168 * 181.62551 * 3 2 1 26 26 H 1.09001 * 109.47519 * 301.62437 * 3 2 1 27 27 H 1.08995 * 109.47529 * 61.62647 * 3 2 1 28 28 H 0.96993 * 119.99529 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.46197 * 359.97438 * 16 15 13 30 30 H 1.08002 * 126.06042 * 180.12422 * 17 16 15 31 31 H 1.08007 * 125.55546 * 179.73662 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9048 -1.7264 1.0746 6 1 3.7547 -1.7904 1.7378 7 6 2.7111 -2.6958 0.0973 8 7 1.7122 -2.5851 -0.7491 9 14 3.8709 -4.1560 -0.0126 10 1 3.3562 -5.2618 0.8344 11 1 3.9596 -4.6127 -1.4228 12 1 5.2190 -3.7543 0.4633 13 6 1.5946 -0.3060 2.4165 14 8 0.8928 0.6818 2.5338 15 6 1.9788 -1.0769 3.6021 16 6 1.7478 -0.7226 4.9157 17 6 2.2749 -1.7416 5.7147 18 6 2.8145 -2.6758 4.8951 19 7 2.6412 -2.2838 3.6087 20 1 2.9346 -2.7724 2.8239 21 1 -0.3633 0.6082 0.8284 22 1 -0.3633 0.4134 -0.9409 23 1 -0.3633 -1.0215 0.1124 24 1 1.8934 -0.5139 -0.8899 25 1 3.1296 1.4426 -0.0292 26 1 1.6531 1.9647 -0.8750 27 1 1.7007 1.9478 0.9041 28 1 1.5773 -3.2613 -1.4312 29 1 1.2518 0.1724 5.2613 30 1 2.2589 -1.7758 6.7940 31 1 3.3033 -3.5844 5.2144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701293939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:10 Heat of formation + Delta-G solvation = 14.726913 kcal Electronic energy + Delta-G solvation = -15747.403755 eV Core-core repulsion = 13222.981680 eV Total energy + Delta-G solvation = -2524.422075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36584 -38.26968 -35.11144 -32.49471 -31.17920 -29.90328 -27.99106 -26.07939 -25.08917 -22.24665 -20.37531 -19.23980 -18.97869 -18.47385 -15.69172 -15.40406 -14.47767 -14.36882 -14.02289 -13.04604 -12.90105 -12.87400 -12.61422 -12.05193 -11.99624 -11.79758 -11.53725 -11.40742 -11.27013 -10.97212 -10.74038 -10.43114 -10.12994 -9.95469 -9.04780 -8.45826 -8.17142 -7.63258 -7.31957 -6.58178 -4.41292 2.53985 2.92537 3.01155 3.02275 3.50960 3.83185 4.17116 4.45864 4.78374 4.92480 5.74709 5.99960 6.10364 6.22657 6.29762 6.35263 6.51152 6.66060 6.81009 6.86981 6.95585 6.98074 6.99199 7.10492 7.43130 7.50966 7.61832 7.80653 7.84276 8.22406 8.43436 8.81855 9.44660 9.83943 10.40725 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.016009 C = 0.009730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.646945 B = 1748.552872 C = 2877.011238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 C -0.166 4.166 4 N -0.438 5.438 5 C -0.359 4.359 6 H 0.089 0.911 7 C 0.050 3.950 8 N -0.845 5.845 9 Si 0.905 3.095 10 H -0.271 1.271 11 H -0.275 1.275 12 H -0.265 1.265 13 C 0.542 3.458 14 O -0.587 6.587 15 C 0.002 3.998 16 C -0.157 4.157 17 C -0.219 4.219 18 C -0.025 4.025 19 N -0.517 5.517 20 H 0.428 0.572 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.108 0.892 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.274 0.726 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -1.847 2.984 4.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 C -0.224 4.224 4 N -0.156 5.156 5 C -0.488 4.488 6 H 0.106 0.894 7 C -0.159 4.159 8 N -0.479 5.479 9 Si 0.729 3.271 10 H -0.196 1.196 11 H -0.200 1.200 12 H -0.189 1.189 13 C 0.332 3.668 14 O -0.472 6.472 15 C -0.115 4.115 16 C -0.184 4.184 17 C -0.244 4.244 18 C -0.162 4.162 19 N -0.120 5.120 20 H 0.277 0.723 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.197 -1.547 2.587 3.731 hybrid contribution 0.790 -1.178 -0.486 1.500 sum 2.988 -2.725 2.101 4.557 Atomic orbital electron populations 1.21941 0.96530 1.01942 1.00119 1.20900 0.93483 0.90262 0.90547 1.22238 1.00072 0.98516 1.01560 1.43396 1.39070 1.29724 1.03453 1.19414 1.06138 1.02571 1.20660 0.89410 1.25643 0.96189 0.98245 0.95817 1.69831 1.28073 1.34042 1.15995 0.86272 0.80544 0.81359 0.78889 1.19647 1.19965 1.18887 1.17398 0.81523 0.85311 0.82602 1.90614 1.41890 1.28465 1.86198 1.20774 1.05570 0.89721 0.95417 1.21110 1.05862 1.00571 0.90807 1.20652 1.08328 0.97032 0.98423 1.21933 1.07990 1.01742 0.84504 1.43559 1.42467 1.17735 1.08245 0.72340 0.92021 0.94360 0.92527 0.87383 0.93903 0.93622 0.91601 0.91501 0.84811 0.85428 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.85 37.16 0.33 -3.06 16 2 C 0.15 3.60 2.30 -67.93 -0.16 3.44 16 3 C -0.17 -3.55 9.22 37.16 0.34 -3.21 16 4 N -0.44 -10.93 2.48 -109.25 -0.27 -11.20 16 5 C -0.36 -8.66 6.57 -15.01 -0.10 -8.76 16 6 H 0.09 2.05 6.25 -52.49 -0.33 1.72 16 7 C 0.05 1.18 5.27 -17.45 -0.09 1.08 16 8 N -0.85 -20.75 10.89 55.50 0.60 -20.15 16 9 Si 0.90 17.63 29.52 -169.99 -5.02 12.61 16 10 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 13 C 0.54 13.77 7.00 -12.91 -0.09 13.68 16 14 O -0.59 -15.66 13.21 5.16 0.07 -15.59 16 15 C 0.00 0.04 6.72 -81.98 -0.55 -0.51 16 16 C -0.16 -3.28 10.67 -39.08 -0.42 -3.70 16 17 C -0.22 -3.91 10.81 -39.98 -0.43 -4.35 16 18 C -0.02 -0.43 11.89 -16.87 -0.20 -0.63 16 19 N -0.52 -10.60 5.25 -9.37 -0.05 -10.65 16 20 H 0.43 8.72 5.45 -40.82 -0.22 8.50 16 21 H 0.06 1.48 6.17 -51.93 -0.32 1.16 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 24 H 0.11 2.71 5.88 -51.93 -0.31 2.40 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.50 6.38 -51.93 -0.33 1.17 16 28 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 257.10 15.07 3.87 3.87 Total: -1.00 -27.29 257.10 -5.76 -33.05 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -3.60 Total: 14.08 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.37 Total: -6.02 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.28 Total: -42.00 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.07 Total: -15.59 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.02 Total: 12.61 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.29 -5.76 -33.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701293939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.774 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds