Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 N 1.46503 * 109.46773 * 119.99849 * 2 1 3 5 5 C 1.36877 * 120.00020 * 126.09722 * 4 2 1 6 6 H 1.07995 * 120.00175 * 136.24047 * 5 4 2 7 7 C 1.39010 * 119.99635 * 316.23967 * 5 4 2 8 8 N 1.31403 * 120.00179 * 3.13439 * 7 5 4 9 9 Si 1.86801 * 119.99993 * 183.13551 * 7 5 4 10 10 H 1.48495 * 109.47041 * 89.99810 * 9 7 5 11 11 H 1.48501 * 109.47151 * 209.99933 * 9 7 5 12 12 H 1.48496 * 109.47020 * 329.99730 * 9 7 5 13 13 C 1.34780 * 120.00043 * 306.09061 * 4 2 1 14 14 O 1.21738 * 119.99880 * 354.04201 * 13 4 2 15 15 C 1.46545 * 119.99685 * 174.04306 * 13 4 2 16 16 C 1.37997 * 126.23465 * 172.26268 * 15 13 4 17 17 C 1.39809 * 107.08040 * 179.87860 * 16 15 13 18 18 C 1.35485 * 107.87864 * 0.38067 * 17 16 15 19 19 N 1.35589 * 108.88425 * 359.76651 * 18 17 16 20 20 H 0.96994 * 125.68175 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47008 * 306.28401 * 1 2 3 22 22 H 1.09004 * 109.47051 * 66.28262 * 1 2 3 23 23 H 1.08996 * 109.47205 * 186.27803 * 1 2 3 24 24 H 1.09001 * 109.47395 * 239.99724 * 2 1 3 25 25 H 1.08997 * 109.47168 * 181.62551 * 3 2 1 26 26 H 1.09001 * 109.47519 * 301.62437 * 3 2 1 27 27 H 1.08995 * 109.47529 * 61.62647 * 3 2 1 28 28 H 0.96993 * 119.99529 * 179.97438 * 8 7 5 29 29 H 1.08000 * 126.46197 * 359.97438 * 16 15 13 30 30 H 1.08002 * 126.06042 * 180.12422 * 17 16 15 31 31 H 1.08007 * 125.55546 * 179.73662 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9048 -1.7264 1.0746 6 1 3.7547 -1.7904 1.7378 7 6 2.7111 -2.6958 0.0973 8 7 1.7122 -2.5851 -0.7491 9 14 3.8709 -4.1560 -0.0126 10 1 3.3562 -5.2618 0.8344 11 1 3.9596 -4.6127 -1.4228 12 1 5.2190 -3.7543 0.4633 13 6 1.5946 -0.3060 2.4165 14 8 0.8928 0.6818 2.5338 15 6 1.9788 -1.0769 3.6021 16 6 1.7478 -0.7226 4.9157 17 6 2.2749 -1.7416 5.7147 18 6 2.8145 -2.6758 4.8951 19 7 2.6412 -2.2838 3.6087 20 1 2.9346 -2.7724 2.8239 21 1 -0.3633 0.6082 0.8284 22 1 -0.3633 0.4134 -0.9409 23 1 -0.3633 -1.0215 0.1124 24 1 1.8934 -0.5139 -0.8899 25 1 3.1296 1.4426 -0.0292 26 1 1.6531 1.9647 -0.8750 27 1 1.7007 1.9478 0.9041 28 1 1.5773 -3.2613 -1.4312 29 1 1.2518 0.1724 5.2613 30 1 2.2589 -1.7758 6.7940 31 1 3.3033 -3.5844 5.2144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701293939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -1.051230 kcal Electronic energy + Delta-G solvation = -15748.087947 eV Core-core repulsion = 13222.981680 eV Total energy + Delta-G solvation = -2525.106267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96016 -40.06922 -36.99305 -34.31119 -32.97058 -31.49729 -29.57643 -27.90033 -26.92508 -24.00297 -22.00040 -20.81085 -20.74151 -20.18380 -17.49405 -17.06365 -16.33890 -16.02750 -15.79833 -14.76948 -14.57120 -14.48286 -14.30310 -13.89210 -13.72730 -13.34029 -13.09001 -12.99160 -12.92533 -12.71036 -12.48192 -12.07036 -11.97068 -11.79530 -10.84885 -10.36211 -9.71141 -9.48035 -8.90024 -8.36744 -6.27085 0.86941 1.40677 1.42755 1.52822 2.06330 2.19705 2.60341 2.68344 3.00656 3.15052 4.23295 4.45105 4.47962 4.51761 4.65154 4.74322 4.81244 4.86980 5.01226 5.10966 5.16713 5.23672 5.34341 5.47199 5.54426 5.65557 5.98906 6.09241 6.25638 6.41812 6.89730 6.99658 7.58456 7.98160 8.63174 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.016009 C = 0.009730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.646945 B = 1748.552872 C = 2877.011238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.144 3.856 3 C -0.154 4.154 4 N -0.446 5.446 5 C -0.375 4.375 6 H 0.093 0.907 7 C 0.013 3.987 8 N -0.874 5.874 9 Si 0.973 3.027 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.256 1.256 13 C 0.526 3.474 14 O -0.617 6.617 15 C -0.049 4.049 16 C -0.161 4.161 17 C -0.221 4.221 18 C -0.002 4.002 19 N -0.523 5.523 20 H 0.427 0.573 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.096 0.904 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.276 0.724 29 H 0.131 0.869 30 H 0.164 0.836 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -3.451 3.921 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 C -0.212 4.212 4 N -0.164 5.164 5 C -0.503 4.503 6 H 0.110 0.890 7 C -0.193 4.193 8 N -0.509 5.509 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.179 1.179 13 C 0.317 3.683 14 O -0.505 6.505 15 C -0.164 4.164 16 C -0.188 4.188 17 C -0.245 4.245 18 C -0.140 4.140 19 N -0.125 5.125 20 H 0.275 0.725 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.113 0.887 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.182 0.818 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.509 -3.143 3.529 5.886 hybrid contribution 0.376 -0.689 -0.721 1.066 sum 3.886 -3.832 2.807 6.137 Atomic orbital electron populations 1.21786 0.96293 1.00209 1.00789 1.20969 0.93737 0.91262 0.89961 1.22116 1.00022 0.97173 1.01936 1.43606 1.39090 1.30077 1.03644 1.19672 1.06311 1.03021 1.21306 0.88958 1.26431 0.97553 1.00404 0.94928 1.69948 1.29586 1.34905 1.16446 0.85229 0.78773 0.77878 0.78621 1.18591 1.20323 1.17926 1.17852 0.81432 0.85446 0.83559 1.90562 1.43321 1.29762 1.86819 1.20620 1.09067 0.91564 0.95187 1.21371 1.05384 1.01291 0.90768 1.21059 1.07474 0.95783 1.00137 1.22783 1.05709 1.02600 0.82860 1.43506 1.42460 1.17068 1.09490 0.72515 0.93440 0.91870 0.94871 0.88665 0.93865 0.90845 0.93347 0.91370 0.85104 0.81819 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.85 71.98 0.64 -5.61 16 2 C 0.14 6.97 2.30 44.99 0.10 7.07 16 3 C -0.15 -6.67 9.22 71.98 0.66 -6.00 16 4 N -0.45 -22.77 2.48 -617.74 -1.53 -24.30 16 5 C -0.38 -18.14 6.57 84.09 0.55 -17.59 16 6 H 0.09 4.28 6.25 -2.91 -0.02 4.26 16 7 C 0.01 0.61 5.27 84.94 0.45 1.06 16 8 N -0.87 -43.19 10.89 21.68 0.24 -42.96 16 9 Si 0.97 35.17 29.52 68.60 2.03 37.20 16 10 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 11 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 12 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 13 C 0.53 27.49 7.00 86.41 0.61 28.10 16 14 O -0.62 -34.25 13.21 -4.47 -0.06 -34.31 16 15 C -0.05 -2.27 6.72 40.34 0.27 -2.00 16 16 C -0.16 -6.61 10.67 22.59 0.24 -6.37 16 17 C -0.22 -7.16 10.81 22.01 0.24 -6.92 16 18 C 0.00 -0.08 11.89 83.48 0.99 0.92 16 19 N -0.52 -20.63 5.25 -183.56 -0.96 -21.59 16 20 H 0.43 16.80 5.45 -92.71 -0.51 16.30 16 21 H 0.05 2.34 6.17 -2.39 -0.01 2.33 16 22 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 23 H 0.03 1.66 8.09 -2.39 -0.02 1.64 16 24 H 0.10 4.85 5.88 -2.39 -0.01 4.84 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.05 2.25 6.38 -2.39 -0.02 2.24 16 28 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 29 H 0.13 5.29 8.06 -2.91 -0.02 5.26 16 30 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -60.02 257.10 5.09 -54.92 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.63 Total: 38.37 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.75 Total: -7.33 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -2.26 Total: -88.85 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.31 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -60.02 5.09 -54.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701293939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.872 kcal (2) G-P(sol) polarization free energy of solvation -60.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds