Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99945 * 2 1 4 4 C 1.50696 * 109.47132 * 270.00217 * 3 2 1 5 5 H 1.07998 * 120.00547 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99544 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00405 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99617 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47143 * 59.99926 * 8 6 4 10 10 H 1.48505 * 109.47293 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47403 * 300.00212 * 8 6 4 12 12 C 1.39710 * 120.00370 * 180.02562 * 2 1 3 13 13 C 1.39312 * 120.48663 * 0.02562 * 12 2 1 14 14 C 1.38497 * 118.35383 * 179.97438 * 13 12 2 15 15 C 1.38272 * 119.24334 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.53890 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.46702 * 0.02562 * 16 15 14 18 18 N 1.31854 * 120.93083 * 0.25982 * 15 14 13 19 19 C 1.31820 * 121.79704 * 359.46825 * 18 15 14 20 20 H 1.08999 * 109.47106 * 269.99340 * 1 2 3 21 21 H 1.08999 * 109.47342 * 29.99664 * 1 2 3 22 22 H 1.09007 * 109.46825 * 149.99748 * 1 2 3 23 23 H 1.09001 * 109.47027 * 30.00510 * 3 2 1 24 24 H 1.09006 * 109.46652 * 149.99942 * 3 2 1 25 25 H 0.96997 * 120.00372 * 179.97438 * 7 6 4 26 26 H 1.07991 * 120.82500 * 359.95821 * 13 12 2 27 27 H 1.08000 * 120.38103 * 180.02562 * 14 13 12 28 28 H 1.09000 * 109.47318 * 119.99646 * 16 15 14 29 29 H 1.09000 * 109.47161 * 240.00276 * 16 15 14 30 30 H 0.96698 * 113.99410 * 179.97438 * 17 16 15 31 31 H 1.07994 * 119.67836 * 180.24571 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.5524 3.6187 -0.6730 8 14 3.4379 3.4171 -3.4338 9 1 2.1405 3.5938 -4.1345 10 1 4.1803 4.7032 -3.4338 11 1 4.2413 2.3823 -4.1332 12 6 2.1636 -1.2099 -0.0005 13 6 1.4774 -2.4223 -0.0016 14 6 2.2141 -3.5950 -0.0027 15 6 3.5951 -3.5252 -0.0031 16 6 4.4033 -4.7972 -0.0037 17 8 3.5215 -5.9218 -0.0042 18 7 4.2149 -2.3615 0.0025 19 6 3.5525 -1.2218 -0.0016 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1384 0.5139 25 1 4.0292 4.4446 -0.8502 26 1 0.3978 -2.4471 -0.0014 27 1 1.7157 -4.5532 -0.0039 28 1 5.0315 -4.8282 -0.8939 29 1 5.0321 -4.8286 0.8861 30 1 3.9741 -6.7764 -0.0050 31 1 4.0951 -0.2880 -0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703420182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = -30.168788 kcal Electronic energy + Delta-G solvation = -14719.441347 eV Core-core repulsion = 12193.072449 eV Total energy + Delta-G solvation = -2526.368899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18499 -38.24566 -37.14395 -34.86932 -32.97968 -31.79221 -29.84381 -27.99879 -26.04307 -24.59179 -23.51768 -21.63796 -18.69411 -18.36465 -18.26305 -17.07707 -16.59732 -16.28035 -16.06912 -15.40389 -15.25678 -14.89509 -14.19383 -14.16049 -13.88341 -13.49989 -13.19951 -13.07647 -12.60310 -12.49938 -12.41666 -11.96757 -11.90247 -11.31326 -10.82902 -10.65843 -10.30098 -10.24308 -8.41728 -7.95249 -6.38729 0.42067 0.57901 1.37763 1.39894 1.47729 2.31272 2.49075 2.98808 3.05996 3.08506 3.97140 3.98768 4.13160 4.30636 4.39166 4.43461 4.65090 4.66741 4.76023 4.91461 4.91751 5.03406 5.15522 5.26364 5.33693 5.64160 5.79562 6.03519 6.34177 6.67142 6.77616 7.00154 7.22336 7.32841 8.82100 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.006998 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.957637 B = 4000.271036 C = 4404.443941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.618 5.618 3 C 0.263 3.737 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.016 3.984 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.172 3.828 13 C -0.174 4.174 14 C -0.095 4.095 15 C 0.016 3.984 16 C 0.152 3.848 17 O -0.580 6.580 18 N -0.463 5.463 19 C 0.008 3.992 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.268 0.732 26 H 0.155 0.845 27 H 0.158 0.842 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.405 0.595 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -14.624 1.127 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.325 5.325 3 C 0.141 3.859 4 C -0.585 4.585 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.063 3.937 13 C -0.204 4.204 14 C -0.115 4.115 15 C -0.124 4.124 16 C 0.073 3.927 17 O -0.389 6.389 18 N -0.173 5.173 19 C -0.155 4.155 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.173 0.827 27 H 0.175 0.825 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.257 0.743 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.716 -13.775 1.189 14.090 hybrid contribution -0.078 0.552 -0.774 0.954 sum -2.794 -13.222 0.415 13.521 Atomic orbital electron populations 1.21707 0.78697 1.02998 1.01475 1.46985 1.05970 1.03203 1.76342 1.18885 0.91282 0.80032 0.95667 1.21725 1.36889 1.06657 0.93230 0.93170 1.25741 0.94963 0.96280 1.01388 1.70013 1.38698 1.14774 1.32836 0.85578 0.78586 0.77518 0.79820 1.19225 1.20329 1.20165 1.19126 0.92815 0.87676 0.94042 1.21380 1.01293 0.90066 1.07697 1.21790 0.94233 0.98941 0.96535 1.21099 0.92756 0.93120 1.05460 1.20266 0.89320 0.81714 1.01379 1.86316 1.37401 1.17316 1.97836 1.66985 1.41540 0.98060 1.10717 1.22133 0.90748 0.95700 1.06886 0.92324 0.91894 0.90152 0.96358 0.96834 0.92279 0.82716 0.82462 0.91476 0.91185 0.74321 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.22 127.77 1.31 4.39 16 2 N -0.62 -26.40 2.99 -726.12 -2.17 -28.57 16 3 C 0.26 13.50 4.92 85.63 0.42 13.92 16 4 C -0.55 -30.27 9.39 25.60 0.24 -30.03 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.02 0.90 5.46 84.66 0.46 1.36 16 7 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.17 7.10 6.57 38.30 0.25 7.35 16 13 C -0.17 -5.85 9.30 22.59 0.21 -5.64 16 14 C -0.09 -3.00 9.40 22.34 0.21 -2.79 16 15 C 0.02 0.54 6.78 42.57 0.29 0.83 16 16 C 0.15 3.70 7.59 71.24 0.54 4.24 16 17 O -0.58 -11.42 12.10 -148.98 -1.80 -13.22 16 18 N -0.46 -18.96 10.26 -183.34 -1.88 -20.85 16 19 C 0.01 0.38 10.38 84.85 0.88 1.26 16 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 22 H 0.08 2.20 6.25 -2.38 -0.01 2.18 16 23 H 0.02 0.98 8.07 -2.39 -0.02 0.97 16 24 H 0.01 0.76 6.23 -2.38 -0.01 0.74 16 25 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.16 4.20 6.27 -2.91 -0.02 4.18 16 27 H 0.16 4.16 6.99 -2.91 -0.02 4.14 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.41 3.42 9.12 -74.06 -0.68 2.74 16 31 H 0.13 6.67 6.16 -2.91 -0.02 6.66 16 Total: -1.00 -66.34 267.22 1.73 -64.61 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.47 Total: 10.66 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.81 Total: -5.12 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.77 Total: -102.84 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.80 Total: -13.22 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.34 1.73 -64.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703420182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.441 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds