Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47216 * 265.34197 * 3 2 1 5 5 C 1.37099 * 120.00041 * 264.02737 * 4 3 2 6 6 H 1.07993 * 120.00227 * 197.62245 * 5 4 3 7 7 C 1.38951 * 119.99732 * 17.63152 * 5 4 3 8 8 N 1.31416 * 120.00403 * 21.34921 * 7 5 4 9 9 Si 1.86801 * 119.99760 * 201.35186 * 7 5 4 10 10 H 1.48504 * 109.47058 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.47214 * 209.99380 * 9 7 5 12 12 H 1.48496 * 109.46995 * 330.00004 * 9 7 5 13 13 C 1.34780 * 119.99952 * 84.02448 * 4 3 2 14 14 O 1.21294 * 119.99559 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99940 * 0.02562 * 13 4 3 16 16 H 1.08997 * 115.56513 * 34.29245 * 15 13 4 17 17 C 1.53003 * 117.49506 * 248.60054 * 15 13 4 18 18 C 1.52990 * 60.03334 * 252.52348 * 17 15 13 19 19 H 1.09003 * 117.50266 * 107.50207 * 18 17 15 20 20 C 1.53003 * 117.50332 * 252.50099 * 18 17 15 21 21 N 1.46902 * 109.47097 * 243.61488 * 20 18 17 22 22 H 4.40645 * 5.51384 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.47073 * 145.33667 * 3 2 1 24 24 H 1.09000 * 109.46976 * 25.34479 * 3 2 1 25 25 H 0.96999 * 119.99789 * 180.02562 * 8 7 5 26 26 H 1.09005 * 117.49796 * 145.01672 * 17 15 13 27 27 H 1.08997 * 117.50092 * 0.02914 * 17 15 13 28 28 H 1.09001 * 109.46860 * 3.60633 * 20 18 17 29 29 H 1.08991 * 109.47496 * 123.60625 * 20 18 17 30 30 H 1.00893 * 111.00690 * 56.03933 * 21 20 18 31 31 H 1.00899 * 110.99559 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 0.1130 1.3766 5 6 3.4788 1.3393 1.8838 6 1 4.0937 1.4041 2.7692 7 6 3.0365 2.4988 1.2588 8 7 1.9849 2.4608 0.4716 9 14 3.9368 4.1116 1.5374 10 1 5.0045 4.2652 0.5167 11 1 2.9778 5.2398 1.4241 12 1 4.5438 4.1120 2.8926 13 6 3.2449 -0.9891 2.1445 14 8 3.6497 -0.8960 3.2841 15 6 2.8668 -2.3370 1.5868 16 1 3.0737 -2.4822 0.5266 17 6 1.6231 -3.0164 2.1634 18 6 3.0147 -3.5500 2.5088 19 1 3.3854 -3.3728 3.5184 20 6 3.4419 -4.8739 1.8719 21 7 3.6440 -5.8802 2.9229 22 1 -1.0500 0.0002 0.0000 23 1 3.0090 0.8461 -0.5845 24 1 3.0098 -0.9279 -0.4399 25 1 1.6764 3.2702 0.0350 26 1 1.0116 -3.6085 1.4824 27 1 1.0781 -2.4882 2.9458 28 1 2.6654 -5.2149 1.1871 29 1 4.3725 -4.7296 1.3231 30 1 2.8144 -5.9854 3.4872 31 1 3.9265 -6.7644 2.5273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715152470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = 57.882530 kcal Electronic energy + Delta-G solvation = -14996.493352 eV Core-core repulsion = 12473.942645 eV Total energy + Delta-G solvation = -2522.550707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07518 -36.75065 -34.99284 -33.19317 -32.00580 -31.15702 -26.61762 -25.71052 -24.71848 -22.68023 -20.33117 -18.68250 -17.81280 -16.65114 -16.43047 -15.63779 -15.07724 -14.40814 -14.15338 -13.98085 -13.49624 -13.07531 -12.77811 -12.28785 -12.21769 -11.57677 -11.51066 -11.03030 -10.98355 -10.47627 -10.34047 -9.86860 -9.69488 -9.31943 -9.23629 -8.85916 -8.67669 -8.37776 -7.84041 -6.31768 -3.83854 3.15358 3.26711 3.31620 3.58989 3.79612 4.08460 4.19513 4.38583 4.52643 4.91460 5.05056 5.25072 5.38129 5.47415 5.52142 5.61825 5.79861 5.85402 5.97227 6.11714 6.36450 6.48462 6.70814 6.77747 7.05786 7.16367 7.43876 7.58031 8.08566 8.45471 8.85470 9.15974 9.38544 9.95701 10.69204 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.008040 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.725825 B = 3481.549776 C = 3996.739496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.108 4.108 3 C 0.233 3.767 4 N -0.437 5.437 5 C -0.315 4.315 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.479 3.521 14 O -0.582 6.582 15 C -0.162 4.162 16 H 0.109 0.891 17 C -0.153 4.153 18 C -0.130 4.130 19 H 0.121 0.879 20 C 0.094 3.906 21 N -0.848 5.848 22 H 0.198 0.802 23 H 0.108 0.892 24 H 0.061 0.939 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.341 0.659 31 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -9.891 -3.531 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.110 4.110 3 C 0.110 3.890 4 N -0.155 5.155 5 C -0.442 4.442 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.268 3.732 14 O -0.466 6.466 15 C -0.184 4.184 16 H 0.127 0.873 17 C -0.191 4.191 18 C -0.149 4.149 19 H 0.139 0.861 20 C -0.036 4.036 21 N -0.378 5.378 22 H 0.215 0.785 23 H 0.126 0.874 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.377 -9.168 -2.823 9.600 hybrid contribution -0.887 0.553 -0.620 1.215 sum -1.264 -8.615 -3.443 9.363 Atomic orbital electron populations 1.24218 0.95319 1.06602 1.02151 1.23150 0.94306 0.95197 0.98308 1.18250 0.84352 1.00718 0.85701 1.43617 1.55798 1.06317 1.09739 1.19693 1.29973 0.80984 1.13563 0.87803 1.25293 0.95162 0.99477 0.97422 1.70098 1.19683 1.29376 1.30908 0.85997 0.79139 0.80939 0.79091 1.20325 1.21128 1.19395 1.19149 0.83913 0.84499 0.85679 1.90516 1.51202 1.86301 1.18604 1.22234 1.04110 0.93186 0.98830 0.87292 1.22971 0.90350 1.02739 1.03011 1.22319 0.99293 0.92164 1.01173 0.86056 1.21343 0.99733 0.90436 0.92096 1.58638 1.41367 1.12017 1.25744 0.78512 0.87384 0.92065 0.92172 0.89020 0.88710 0.95557 0.90751 0.84657 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.52 19.25 29.55 0.57 -4.95 16 2 C -0.11 -2.44 11.39 -37.12 -0.42 -2.86 16 3 C 0.23 5.22 4.91 -6.83 -0.03 5.19 16 4 N -0.44 -11.25 2.60 -117.94 -0.31 -11.56 16 5 C -0.31 -8.80 9.32 -14.93 -0.14 -8.94 16 6 H 0.10 3.07 7.39 -52.49 -0.39 2.68 16 7 C 0.03 0.81 4.87 -17.47 -0.09 0.72 16 8 N -0.86 -22.84 9.49 55.50 0.53 -22.31 16 9 Si 0.92 20.66 29.60 -169.99 -5.03 15.62 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.48 11.97 7.35 -10.99 -0.08 11.89 16 14 O -0.58 -16.61 15.91 5.55 0.09 -16.52 16 15 C -0.16 -3.10 4.89 -91.73 -0.45 -3.55 16 16 H 0.11 1.85 6.53 -51.93 -0.34 1.51 16 17 C -0.15 -2.57 9.88 -26.73 -0.26 -2.84 16 18 C -0.13 -2.19 5.46 -90.59 -0.49 -2.69 16 19 H 0.12 2.38 7.67 -51.93 -0.40 1.98 16 20 C 0.09 1.23 7.07 -3.82 -0.03 1.21 16 21 N -0.85 -9.85 9.62 -10.37 -0.10 -9.95 16 22 H 0.20 3.36 7.80 -54.09 -0.42 2.94 16 23 H 0.11 2.54 6.44 -51.93 -0.33 2.20 16 24 H 0.06 1.15 6.27 -51.93 -0.33 0.82 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 27 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.03 0.30 7.88 -51.93 -0.41 -0.10 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.34 3.59 8.99 -39.30 -0.35 3.23 16 31 H 0.34 3.04 9.08 -39.29 -0.36 2.69 16 LS Contribution 273.59 15.07 4.12 4.12 Total: -1.00 -31.74 273.59 -5.85 -37.59 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.72 Total: 9.82 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.43 Total: -6.82 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.12 Total: -43.81 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.74 -5.85 -37.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715152470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.470 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds