Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47200 * 280.17387 * 3 2 1 5 5 C 1.37098 * 119.99955 * 272.71925 * 4 3 2 6 6 H 1.08002 * 119.99949 * 142.00501 * 5 4 3 7 7 C 1.38947 * 120.00343 * 322.00805 * 5 4 3 8 8 N 1.31409 * 120.00096 * 159.30382 * 7 5 4 9 9 Si 1.86805 * 119.99856 * 339.30073 * 7 5 4 10 10 H 1.48500 * 109.46939 * 93.92866 * 9 7 5 11 11 H 1.48495 * 109.46967 * 213.93083 * 9 7 5 12 12 H 1.48501 * 109.46982 * 333.93036 * 9 7 5 13 13 C 1.34783 * 119.99849 * 92.99814 * 4 3 2 14 14 O 1.21289 * 119.99897 * 183.12105 * 13 4 3 15 15 C 1.50692 * 120.00195 * 3.11969 * 13 4 3 16 16 N 1.46901 * 115.55106 * 285.97793 * 15 13 4 17 17 C 1.46897 * 110.99695 * 295.54261 * 16 15 13 18 18 C 1.52995 * 117.50209 * 140.30337 * 15 13 4 19 19 C 1.53005 * 117.49889 * 71.64258 * 15 13 4 20 20 H 4.40635 * 5.51399 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.47372 * 160.17497 * 3 2 1 22 22 H 1.09004 * 109.47591 * 40.17432 * 3 2 1 23 23 H 0.97007 * 119.99878 * 179.97438 * 8 7 5 24 24 H 1.00896 * 110.99884 * 59.49628 * 16 15 13 25 25 H 1.09000 * 109.47267 * 178.39269 * 17 16 15 26 26 H 1.09002 * 109.47153 * 298.39034 * 17 16 15 27 27 H 1.09003 * 109.47494 * 58.39054 * 17 16 15 28 28 H 1.09004 * 117.49770 * 0.02562 * 18 15 13 29 29 H 1.08996 * 117.50101 * 145.01935 * 18 15 13 30 30 H 1.08997 * 117.49945 * 214.98253 * 19 15 13 31 31 H 1.09001 * 117.49724 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2431 1.3595 5 6 3.3093 0.8068 2.2236 6 1 3.0655 0.6919 3.2694 7 6 3.8002 2.0189 1.7539 8 7 3.5965 3.1207 2.4404 9 14 4.7499 2.0820 0.1465 10 1 3.8204 2.4066 -0.9652 11 1 5.8015 3.1269 0.2337 12 1 5.3828 0.7627 -0.1066 13 6 3.4171 -1.4989 1.7589 14 8 3.7673 -1.7076 2.9013 15 6 3.2982 -2.6438 0.7863 16 7 1.9271 -3.0574 0.4592 17 6 1.2410 -3.5895 1.6441 18 6 4.3703 -3.7338 0.8436 19 6 4.3489 -2.7414 -0.3217 20 1 -1.0500 0.0002 0.0001 21 1 3.0089 0.9676 -0.3485 22 1 3.0097 -0.7844 -0.6630 23 1 3.9395 3.9668 2.1126 24 1 1.4068 -2.2949 0.0520 25 1 0.2190 -3.8617 1.3805 26 1 1.7703 -4.4714 2.0050 27 1 1.2247 -2.8303 2.4260 28 1 5.1614 -3.6231 1.5852 29 1 4.0584 -4.7578 0.6383 30 1 4.0228 -3.1130 -1.2931 31 1 5.1263 -1.9779 -0.3468 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720491000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 70.861445 kcal Electronic energy + Delta-G solvation = -15694.750395 eV Core-core repulsion = 13172.762496 eV Total energy + Delta-G solvation = -2521.987899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65766 -36.54071 -35.39461 -32.98858 -32.59815 -31.65341 -26.88654 -25.93409 -24.72635 -22.25708 -21.81712 -18.78300 -18.42381 -16.81245 -16.45231 -15.95549 -15.35979 -14.66773 -14.41956 -14.01624 -13.24598 -13.14613 -12.83322 -12.73152 -12.28655 -12.21299 -11.54911 -11.23901 -11.02889 -10.82358 -10.49568 -10.25191 -9.97416 -9.79623 -9.62634 -9.30311 -9.03774 -8.06225 -7.90565 -6.47193 -4.07657 2.92912 3.08188 3.09944 3.14864 3.27582 3.51993 3.92417 4.05511 4.26701 4.48729 4.73591 4.97746 5.20952 5.31368 5.53124 5.58680 5.72149 5.83746 5.87751 5.92119 5.95302 6.15647 6.19417 6.32898 6.43212 7.10334 7.44630 7.49983 8.01284 8.17972 8.38499 8.83676 9.19564 9.61770 10.64648 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.012481 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.492987 B = 2242.838549 C = 2488.129920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.186 3.814 4 N -0.456 5.456 5 C -0.321 4.321 6 H 0.106 0.894 7 C 0.063 3.937 8 N -0.858 5.858 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.481 3.519 14 O -0.550 6.550 15 C 0.008 3.992 16 N -0.650 5.650 17 C 0.030 3.970 18 C -0.132 4.132 19 C -0.162 4.162 20 H 0.215 0.785 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.275 0.725 24 H 0.346 0.654 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -8.528 -8.692 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.180 4.180 3 C 0.064 3.936 4 N -0.177 5.177 5 C -0.448 4.448 6 H 0.124 0.876 7 C -0.143 4.143 8 N -0.494 5.494 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.267 3.733 14 O -0.429 6.429 15 C -0.087 4.087 16 N -0.283 5.283 17 C -0.120 4.120 18 C -0.170 4.170 19 C -0.199 4.199 20 H 0.232 0.768 21 H 0.109 0.891 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.167 0.833 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.019 -9.027 -8.261 12.402 hybrid contribution -0.047 1.236 -0.336 1.282 sum -2.066 -7.791 -8.597 11.784 Atomic orbital electron populations 1.24751 0.95653 1.01891 1.00640 1.23698 0.94872 0.99444 0.99974 1.18993 0.84189 1.02796 0.87670 1.43684 1.56764 1.06284 1.11006 1.19040 1.43676 0.88557 0.93517 0.87648 1.25340 0.95999 0.94907 0.98096 1.69739 1.41524 0.98339 1.39797 0.87084 0.80783 0.79175 0.83367 1.19823 1.20869 1.18343 1.20075 0.81114 0.83388 0.88687 1.90560 1.49155 1.83531 1.19675 1.21591 0.88321 0.98093 1.00663 1.60478 1.01047 1.38112 1.28679 1.22126 0.98022 0.99970 0.91844 1.22931 0.99080 0.94859 1.00166 1.23200 0.99833 1.02626 0.94274 0.76807 0.89104 0.88764 0.91418 0.83335 0.91685 0.91552 0.95137 0.88106 0.88035 0.87687 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.52 19.13 29.55 0.57 -2.96 16 2 C -0.18 -3.49 11.52 -37.12 -0.43 -3.92 16 3 C 0.19 3.90 4.38 -6.83 -0.03 3.87 16 4 N -0.46 -11.26 2.14 -117.93 -0.25 -11.51 16 5 C -0.32 -9.21 9.36 -14.93 -0.14 -9.35 16 6 H 0.11 3.42 7.90 -52.49 -0.41 3.00 16 7 C 0.06 1.75 5.34 -17.47 -0.09 1.65 16 8 N -0.86 -24.83 13.96 55.50 0.77 -24.06 16 9 Si 0.87 20.03 25.00 -169.99 -4.25 15.78 16 10 H -0.27 -5.82 6.63 56.52 0.37 -5.44 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.48 11.54 6.17 -10.99 -0.07 11.47 16 14 O -0.55 -15.25 16.78 5.55 0.09 -15.15 16 15 C 0.01 0.16 0.88 -132.76 -0.12 0.04 16 16 N -0.65 -10.95 6.96 -108.37 -0.75 -11.70 16 17 C 0.03 0.48 10.56 60.06 0.63 1.12 16 18 C -0.13 -2.12 10.02 -26.70 -0.27 -2.39 16 19 C -0.16 -2.52 8.71 -26.69 -0.23 -2.75 16 20 H 0.22 2.62 7.80 -54.09 -0.42 2.19 16 21 H 0.09 1.98 3.04 -51.93 -0.16 1.82 16 22 H 0.09 1.70 5.41 -51.93 -0.28 1.42 16 23 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.35 5.85 5.77 -39.29 -0.23 5.63 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 28 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 266.36 15.07 4.01 4.01 Total: -1.00 -31.94 266.36 -4.14 -36.08 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.59 Total: 9.77 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.18 Total: -3.22 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.23 Total: -47.27 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.09 Total: -15.15 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.25 Total: 15.78 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.94 -4.14 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720491000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.946 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds