Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47200 * 280.17387 * 3 2 1 5 5 C 1.37098 * 119.99955 * 272.71925 * 4 3 2 6 6 H 1.08002 * 119.99949 * 142.00501 * 5 4 3 7 7 C 1.38947 * 120.00343 * 322.00805 * 5 4 3 8 8 N 1.31409 * 120.00096 * 159.30382 * 7 5 4 9 9 Si 1.86805 * 119.99856 * 339.30073 * 7 5 4 10 10 H 1.48500 * 109.46939 * 93.92866 * 9 7 5 11 11 H 1.48495 * 109.46967 * 213.93083 * 9 7 5 12 12 H 1.48501 * 109.46982 * 333.93036 * 9 7 5 13 13 C 1.34783 * 119.99849 * 92.99814 * 4 3 2 14 14 O 1.21289 * 119.99897 * 183.12105 * 13 4 3 15 15 C 1.50692 * 120.00195 * 3.11969 * 13 4 3 16 16 N 1.46901 * 115.55106 * 285.97793 * 15 13 4 17 17 C 1.46897 * 110.99695 * 295.54261 * 16 15 13 18 18 C 1.52995 * 117.50209 * 140.30337 * 15 13 4 19 19 C 1.53005 * 117.49889 * 71.64258 * 15 13 4 20 20 H 4.40635 * 5.51399 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.47372 * 160.17497 * 3 2 1 22 22 H 1.09004 * 109.47591 * 40.17432 * 3 2 1 23 23 H 0.97007 * 119.99878 * 179.97438 * 8 7 5 24 24 H 1.00896 * 110.99884 * 59.49628 * 16 15 13 25 25 H 1.09000 * 109.47267 * 178.39269 * 17 16 15 26 26 H 1.09002 * 109.47153 * 298.39034 * 17 16 15 27 27 H 1.09003 * 109.47494 * 58.39054 * 17 16 15 28 28 H 1.09004 * 117.49770 * 0.02562 * 18 15 13 29 29 H 1.08996 * 117.50101 * 145.01935 * 18 15 13 30 30 H 1.08997 * 117.49945 * 214.98253 * 19 15 13 31 31 H 1.09001 * 117.49724 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2431 1.3595 5 6 3.3093 0.8068 2.2236 6 1 3.0655 0.6919 3.2694 7 6 3.8002 2.0189 1.7539 8 7 3.5965 3.1207 2.4404 9 14 4.7499 2.0820 0.1465 10 1 3.8204 2.4066 -0.9652 11 1 5.8015 3.1269 0.2337 12 1 5.3828 0.7627 -0.1066 13 6 3.4171 -1.4989 1.7589 14 8 3.7673 -1.7076 2.9013 15 6 3.2982 -2.6438 0.7863 16 7 1.9271 -3.0574 0.4592 17 6 1.2410 -3.5895 1.6441 18 6 4.3703 -3.7338 0.8436 19 6 4.3489 -2.7414 -0.3217 20 1 -1.0500 0.0002 0.0001 21 1 3.0089 0.9676 -0.3485 22 1 3.0097 -0.7844 -0.6630 23 1 3.9395 3.9668 2.1126 24 1 1.4068 -2.2949 0.0520 25 1 0.2190 -3.8617 1.3805 26 1 1.7703 -4.4714 2.0050 27 1 1.2247 -2.8303 2.4260 28 1 5.1614 -3.6231 1.5852 29 1 4.0584 -4.7578 0.6383 30 1 4.0228 -3.1130 -1.2931 31 1 5.1263 -1.9779 -0.3468 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720491000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 46.222927 kcal Electronic energy + Delta-G solvation = -15695.818802 eV Core-core repulsion = 13172.762496 eV Total energy + Delta-G solvation = -2523.056306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34691 -38.09354 -37.26383 -34.60227 -34.18318 -33.38812 -28.60460 -27.71853 -26.20836 -23.72589 -23.30930 -20.39363 -20.13936 -18.59706 -18.02385 -17.79241 -16.88935 -16.19393 -16.00271 -15.61288 -15.01079 -14.85277 -14.37585 -14.28704 -14.03583 -13.95980 -12.93499 -12.85314 -12.64556 -12.41765 -12.08292 -11.77992 -11.48938 -11.40081 -11.22891 -11.01605 -10.72215 -10.01176 -9.57219 -8.60059 -6.27621 1.12006 1.24110 1.37528 1.54991 1.76270 1.83922 2.10317 2.56141 2.75084 2.81417 3.05790 3.51131 3.69412 3.92434 4.10871 4.15010 4.31153 4.40049 4.56200 4.59606 4.69985 4.90699 4.94974 5.02707 5.23287 5.40511 5.73900 5.91428 6.15611 6.40787 6.64079 6.78627 7.12387 7.67465 8.56982 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.012481 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.492987 B = 2242.838549 C = 2488.129920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.241 4.241 3 C 0.188 3.812 4 N -0.464 5.464 5 C -0.344 4.344 6 H 0.040 0.960 7 C 0.016 3.984 8 N -0.905 5.905 9 Si 0.939 3.061 10 H -0.237 1.237 11 H -0.280 1.280 12 H -0.245 1.245 13 C 0.474 3.526 14 O -0.606 6.606 15 C -0.014 4.014 16 N -0.630 5.630 17 C 0.030 3.970 18 C -0.124 4.124 19 C -0.137 4.137 20 H 0.258 0.742 21 H 0.083 0.917 22 H 0.125 0.875 23 H 0.283 0.717 24 H 0.347 0.653 25 H 0.097 0.903 26 H 0.074 0.926 27 H -0.011 1.011 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -9.953 -12.417 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.242 4.242 3 C 0.066 3.934 4 N -0.184 5.184 5 C -0.471 4.471 6 H 0.057 0.943 7 C -0.187 4.187 8 N -0.542 5.542 9 Si 0.761 3.239 10 H -0.163 1.163 11 H -0.206 1.206 12 H -0.168 1.168 13 C 0.262 3.738 14 O -0.489 6.489 15 C -0.110 4.110 16 N -0.262 5.262 17 C -0.119 4.119 18 C -0.162 4.162 19 C -0.175 4.175 20 H 0.274 0.726 21 H 0.100 0.900 22 H 0.142 0.858 23 H 0.092 0.908 24 H 0.167 0.833 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.007 0.993 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.552 -10.458 -12.018 16.134 hybrid contribution -0.021 1.666 0.956 1.921 sum -2.572 -8.792 -11.062 14.363 Atomic orbital electron populations 1.25757 0.96494 0.98832 0.97337 1.23710 0.95302 1.02309 1.02910 1.19029 0.85568 1.03332 0.85444 1.43760 1.57104 1.05572 1.12009 1.18602 1.45735 0.90803 0.91983 0.94252 1.26188 0.96021 0.93632 1.02907 1.69857 1.42530 0.99232 1.42561 0.85972 0.79336 0.79875 0.78699 1.16250 1.20581 1.16787 1.21167 0.79263 0.84468 0.88917 1.90510 1.51326 1.84592 1.22472 1.21461 0.90279 0.97403 1.01816 1.60617 1.00185 1.37345 1.28035 1.22207 1.00123 0.98908 0.90688 1.23057 0.97151 0.95940 1.00010 1.23383 0.97372 1.01649 0.95063 0.72580 0.89986 0.85756 0.90757 0.83311 0.88434 0.90688 0.99270 0.89676 0.85082 0.83958 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 19.13 74.32 1.42 -3.61 16 2 C -0.24 -8.98 11.52 31.12 0.36 -8.62 16 3 C 0.19 7.58 4.38 84.57 0.37 7.95 16 4 N -0.46 -23.38 2.14 -645.42 -1.38 -24.76 16 5 C -0.34 -20.88 9.36 84.04 0.79 -20.09 16 6 H 0.04 2.83 7.90 -2.91 -0.02 2.80 16 7 C 0.02 0.89 5.34 84.93 0.45 1.34 16 8 N -0.91 -54.49 13.96 21.66 0.30 -54.19 16 9 Si 0.94 40.99 25.00 68.60 1.72 42.71 16 10 H -0.24 -9.08 6.63 99.48 0.66 -8.42 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.24 -10.00 7.11 99.48 0.71 -9.30 16 13 C 0.47 23.26 6.17 87.65 0.54 23.80 16 14 O -0.61 -35.63 16.78 -3.06 -0.05 -35.69 16 15 C -0.01 -0.51 0.88 2.78 0.00 -0.51 16 16 N -0.63 -19.54 6.96 -496.77 -3.46 -22.99 16 17 C 0.03 0.93 10.56 127.69 1.35 2.28 16 18 C -0.12 -3.66 10.02 30.62 0.31 -3.35 16 19 C -0.14 -3.76 8.71 30.62 0.27 -3.50 16 20 H 0.26 5.03 7.80 -4.42 -0.03 5.00 16 21 H 0.08 3.40 3.04 -2.39 -0.01 3.39 16 22 H 0.12 4.10 5.41 -2.39 -0.01 4.09 16 23 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 24 H 0.35 10.75 5.77 -89.70 -0.52 10.23 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H -0.01 -0.46 7.51 -2.39 -0.02 -0.47 16 28 H 0.08 2.79 8.14 -2.38 -0.02 2.78 16 29 H 0.13 3.09 8.14 -2.39 -0.02 3.08 16 30 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -76.24 266.36 3.56 -72.68 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.57 Total: 26.56 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.86 Total: -4.31 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.54 Total: -101.94 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.05 Total: -35.69 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.72 Total: 42.71 kcal Total: -76.24 3.56 -72.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720491000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.900 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds