Wall clock time and date at job start Mon Mar 30 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 C 1.53004 * 109.46862 * 119.99450 * 2 1 3 5 5 C 1.50696 * 109.47316 * 295.00328 * 4 2 1 6 6 H 1.08005 * 120.00163 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00284 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99781 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47277 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47323 * 120.00322 * 9 7 5 12 12 H 1.48508 * 109.47194 * 240.00146 * 9 7 5 13 13 N 1.46499 * 109.47863 * 239.99665 * 2 1 3 14 14 C 1.35431 * 119.26295 * 300.30321 * 13 2 1 15 15 C 1.35218 * 120.82288 * 180.31193 * 14 13 2 16 16 C 1.41223 * 119.35172 * 359.40863 * 15 14 13 17 17 O 1.22294 * 120.68699 * 180.25615 * 16 15 14 18 18 C 1.41924 * 118.63168 * 0.28562 * 16 15 14 19 19 N 1.40299 * 120.42690 * 179.97438 * 18 16 15 20 20 C 1.35577 * 119.14387 * 359.97438 * 18 16 15 21 21 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47764 * 300.00244 * 1 2 3 23 23 H 1.09000 * 109.46962 * 60.00648 * 1 2 3 24 24 H 1.09000 * 109.47127 * 55.00294 * 4 2 1 25 25 H 1.09000 * 109.47189 * 175.00695 * 4 2 1 26 26 H 0.97001 * 119.99522 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.58503 * 0.02562 * 14 13 2 28 28 H 1.08002 * 120.32835 * 179.69340 * 15 14 13 29 29 H 0.97010 * 119.99738 * 359.97438 * 19 18 16 30 30 H 0.96995 * 120.00453 * 179.97438 * 19 18 16 31 31 H 1.08003 * 119.71230 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0798 0.9743 2.3757 7 6 1.9921 -0.4020 3.7284 8 7 2.6753 -1.5191 3.8514 9 14 1.4972 0.5624 5.2497 10 1 0.7409 1.7741 4.8433 11 1 0.6429 -0.2869 6.1181 12 1 2.7150 0.9672 5.9971 13 7 2.0185 -0.6906 -1.1961 14 6 1.6772 -1.9855 -1.3986 15 6 2.1156 -2.6552 -2.4885 16 6 2.9289 -1.9876 -3.4304 17 8 3.3351 -2.5684 -4.4270 18 6 3.2659 -0.6290 -3.1962 19 7 4.0720 0.0703 -4.1069 20 6 2.7986 -0.0156 -2.0810 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8898 23 1 -0.3633 0.5137 -0.8900 24 1 1.6053 -1.7197 1.2953 25 1 3.1263 -0.7993 1.2058 26 1 2.9225 -1.8419 4.7321 27 1 1.0509 -2.4908 -0.6783 28 1 1.8426 -3.6891 -2.6396 29 1 4.4032 -0.3749 -4.9027 30 1 4.2982 0.9988 -3.9410 31 1 3.0490 1.0182 -1.8939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725249522.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:01 Heat of formation + Delta-G solvation = -32.599607 kcal Electronic energy + Delta-G solvation = -14846.510184 eV Core-core repulsion = 12320.035877 eV Total energy + Delta-G solvation = -2526.474307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95301 -39.20726 -36.32680 -35.37738 -33.98642 -31.73443 -29.75161 -28.76252 -25.72292 -24.35889 -24.15532 -21.62238 -19.05615 -18.53274 -17.90055 -17.49134 -16.60976 -16.22487 -16.00889 -15.96283 -15.12976 -14.73365 -14.62655 -14.14356 -14.03155 -13.45112 -13.36635 -12.86409 -12.75160 -12.67818 -12.27552 -12.09475 -11.83735 -11.32070 -11.27961 -10.56512 -10.40531 -9.72645 -8.20454 -7.92706 -6.29561 0.45499 0.60423 1.44443 1.47319 1.57494 1.80588 2.44320 2.92076 3.13606 3.17261 3.66726 3.89202 4.07245 4.21182 4.29410 4.45204 4.52819 4.83287 4.96372 4.99683 5.12277 5.34944 5.37386 5.44774 5.54747 5.74623 5.98693 6.19275 6.22690 6.57998 6.86394 7.10525 7.20211 7.40630 8.92377 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.048410 B = 0.006252 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.255840 B = 4477.309918 C = 4550.569017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 H 0.111 0.889 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.959 3.041 10 H -0.254 1.254 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.433 5.433 14 C 0.167 3.833 15 C -0.338 4.338 16 C 0.360 3.640 17 O -0.606 6.606 18 C 0.028 3.972 19 N -0.861 5.861 20 C 0.031 3.969 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.009 0.991 25 H -0.008 1.008 26 H 0.262 0.738 27 H 0.174 0.826 28 H 0.146 0.854 29 H 0.401 0.599 30 H 0.407 0.593 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 6.501 -7.334 10.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 H 0.129 0.871 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.117 5.117 14 C 0.032 3.968 15 C -0.364 4.364 16 C 0.260 3.740 17 O -0.501 6.501 18 C -0.079 4.079 19 N -0.406 5.406 20 C -0.103 4.103 21 H 0.078 0.922 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.027 0.973 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.191 0.809 28 H 0.164 0.836 29 H 0.230 0.770 30 H 0.238 0.762 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.382 6.238 -7.503 10.327 hybrid contribution 0.376 0.072 0.824 0.908 sum -3.006 6.310 -6.679 9.667 Atomic orbital electron populations 1.22078 0.92077 1.03116 1.03200 1.22021 0.96544 0.97200 0.81489 0.87113 1.19382 0.95094 0.95738 0.91505 1.21502 1.35012 1.09041 0.90930 0.90474 1.25869 0.95082 0.95861 1.02656 1.70101 1.39883 1.22880 1.24395 0.85475 0.77802 0.79086 0.79138 1.17799 1.21085 1.21395 1.43510 1.38873 1.09560 1.19714 1.21942 0.94588 0.83813 0.96462 1.21931 1.11927 1.03143 0.99430 1.17524 0.82003 0.87691 0.86822 1.90704 1.57163 1.70523 1.31729 1.18848 1.00645 0.94397 0.94020 1.41799 1.58119 1.14682 1.26009 1.21203 0.98957 0.99402 0.90696 0.92197 0.90025 0.91099 0.97264 0.98995 0.92948 0.80884 0.83611 0.77022 0.76215 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.95 71.98 0.64 -3.22 16 2 C 0.13 3.93 2.69 44.99 0.12 4.05 16 3 H 0.11 3.07 7.70 -2.39 -0.02 3.05 16 4 C 0.02 0.88 4.32 29.85 0.13 1.01 16 5 C -0.53 -24.84 8.41 25.60 0.22 -24.63 16 6 H 0.08 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 0.19 5.46 84.66 0.46 0.65 16 8 N -0.93 -52.14 13.29 21.45 0.28 -51.85 16 9 Si 0.96 39.80 29.54 68.60 2.03 41.83 16 10 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.43 -12.80 2.56 -502.23 -1.29 -14.09 16 14 C 0.17 5.10 9.04 83.44 0.75 5.85 16 15 C -0.34 -11.43 9.99 22.31 0.22 -11.20 16 16 C 0.36 13.68 6.78 23.92 0.16 13.84 16 17 O -0.61 -27.02 17.28 -6.28 -0.11 -27.13 16 18 C 0.03 0.87 6.78 38.08 0.26 1.13 16 19 N -0.86 -21.64 9.11 -51.04 -0.46 -22.11 16 20 C 0.03 0.84 10.14 83.44 0.85 1.68 16 21 H 0.06 1.55 7.17 -2.39 -0.02 1.54 16 22 H 0.08 2.27 6.95 -2.39 -0.02 2.25 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.01 0.42 7.37 -2.39 -0.02 0.40 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.17 4.72 6.75 -2.91 -0.02 4.70 16 28 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.40 10.55 8.35 -92.70 -0.77 9.78 16 30 H 0.41 7.31 8.85 -92.71 -0.82 6.49 16 31 H 0.18 3.72 7.80 -2.91 -0.02 3.70 16 Total: -1.00 -65.40 266.28 3.83 -61.57 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.44 Total: 22.63 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.81 Total: -10.85 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.47 Total: -88.05 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.11 Total: -27.13 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -65.40 3.83 -61.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725249522.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds