Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47707 * 2 1 4 4 C 1.52994 * 109.47303 * 239.99172 * 2 1 3 5 5 C 1.50695 * 109.47397 * 175.00150 * 4 2 1 6 6 H 1.07997 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00465 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99438 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00284 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47205 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46987 * 119.99908 * 9 7 5 12 12 H 1.48502 * 109.47155 * 239.99748 * 9 7 5 13 13 N 1.46509 * 109.46612 * 119.99647 * 2 1 3 14 14 C 1.36055 * 119.61169 * 239.99826 * 13 2 1 15 15 C 1.35871 * 120.57940 * 180.28072 * 14 13 2 16 16 N 1.40315 * 120.08038 * 179.72260 * 15 14 13 17 17 C 1.40613 * 119.83102 * 359.47891 * 15 14 13 18 18 C 1.36374 * 119.25074 * 0.50977 * 17 15 14 19 19 C 1.34633 * 119.61669 * 60.02275 * 13 2 1 20 20 O 1.22119 * 119.92073 * 359.97438 * 19 13 2 21 21 H 1.09003 * 109.47275 * 300.00389 * 1 2 3 22 22 H 1.09002 * 109.47094 * 60.00363 * 1 2 3 23 23 H 1.09001 * 109.47444 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47664 * 295.00558 * 4 2 1 25 25 H 1.09002 * 109.47015 * 55.00524 * 4 2 1 26 26 H 0.97003 * 120.00102 * 179.97438 * 8 7 5 27 27 H 1.08002 * 119.70634 * 359.97438 * 14 13 2 28 28 H 0.96996 * 120.00525 * 0.02562 * 16 15 14 29 29 H 0.97006 * 119.99847 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.37477 * 180.25327 * 17 15 14 31 31 H 1.08002 * 120.29289 * 179.73690 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3126 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1930 -2.3581 8 7 3.5764 -1.8374 -3.2997 9 14 6.0921 -1.0618 -2.4364 10 1 6.5838 -0.2922 -1.2654 11 1 6.6854 -2.4231 -2.4192 12 1 6.4871 -0.3655 -3.6871 13 7 2.0182 -0.6906 1.1963 14 6 2.7999 -0.0218 2.0867 15 6 3.2681 -0.6447 3.1997 16 7 4.0783 0.0534 4.1081 17 6 2.9345 -1.9891 3.4416 18 6 2.1505 -2.6528 2.5446 19 6 1.6886 -1.9797 1.4015 20 8 0.9860 -2.5651 0.5922 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2054 25 1 1.6055 -0.2619 -2.1369 26 1 4.0607 -2.2436 -4.0355 27 1 3.0545 1.0119 1.9046 28 1 4.3045 0.9819 3.9421 29 1 4.4117 -0.3924 4.9026 30 1 3.2985 -2.4916 4.3256 31 1 1.8874 -3.6869 2.7115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725249558.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = -3.001697 kcal Electronic energy + Delta-G solvation = -15402.063990 eV Core-core repulsion = 12876.873145 eV Total energy + Delta-G solvation = -2525.190845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67945 -36.76297 -35.43088 -33.21049 -32.36130 -30.72181 -27.43084 -27.27212 -23.98666 -23.06537 -22.50159 -19.87725 -17.60456 -16.65790 -16.19548 -15.96129 -14.99556 -14.90710 -14.61037 -14.28704 -13.57922 -12.97103 -12.55307 -12.39983 -12.07929 -11.73158 -11.68959 -11.44919 -11.14736 -10.70848 -10.57658 -10.41506 -10.01461 -9.26215 -9.08405 -8.94685 -8.77792 -8.25032 -6.51886 -5.95136 -3.97276 1.38294 2.62701 3.31787 3.39143 3.41752 3.43925 4.28046 4.39390 4.47929 5.08212 5.22417 5.40720 5.43547 5.68633 5.81428 5.93476 6.06006 6.31175 6.32761 6.42311 6.53858 6.80377 6.86578 7.09927 7.64231 7.71074 7.88085 7.94977 8.04466 8.18712 8.40744 8.95907 9.09316 9.64908 11.16107 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.011049 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.262564 B = 2533.550569 C = 3077.600788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 H 0.079 0.921 4 C 0.004 3.996 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.059 3.941 8 N -0.889 5.889 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.449 5.449 14 C 0.061 3.939 15 C 0.073 3.927 16 N -0.887 5.887 17 C -0.058 4.058 18 C -0.217 4.217 19 C 0.504 3.496 20 O -0.552 6.552 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.147 0.853 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.125 0.875 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 4.720 14.152 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 H 0.097 0.903 4 C -0.034 4.034 5 C -0.556 4.556 6 H 0.069 0.931 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.158 5.158 14 C -0.073 4.073 15 C -0.030 4.030 16 N -0.434 5.434 17 C -0.082 4.082 18 C -0.240 4.240 19 C 0.305 3.695 20 O -0.435 6.435 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.164 0.836 28 H 0.220 0.780 29 H 0.221 0.779 30 H 0.143 0.857 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.112 4.204 13.333 14.024 hybrid contribution 1.602 0.299 0.189 1.640 sum 0.490 4.503 13.522 14.260 Atomic orbital electron populations 1.22201 0.95374 1.04067 1.00672 1.21865 0.93447 0.96102 0.85750 0.90255 1.19601 0.95826 0.98588 0.89353 1.21142 0.91894 1.34548 1.08004 0.93053 1.24968 0.98088 0.95322 0.95841 1.69983 1.35240 1.35671 1.11957 0.86596 0.86226 0.77762 0.77759 1.19898 1.21059 1.21055 1.45220 1.39421 1.11701 1.19481 1.20926 0.97668 0.98206 0.90505 1.16673 1.00733 0.92219 0.93401 1.41885 1.60155 1.14607 1.26765 1.20964 0.95926 0.92493 0.98830 1.22031 1.04463 1.01618 0.95927 1.16810 0.83810 0.80879 0.88000 1.90896 1.40650 1.64855 1.47105 0.94094 0.91595 0.90072 0.92692 0.95292 0.93090 0.83551 0.77997 0.77925 0.85735 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.11 37.16 0.34 -2.76 16 2 C 0.13 2.73 2.55 -67.93 -0.17 2.56 16 3 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 4 C 0.00 0.09 4.31 -27.89 -0.12 -0.03 16 5 C -0.52 -14.73 8.84 -34.44 -0.30 -15.04 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.45 -9.02 2.26 -112.42 -0.25 -9.28 16 14 C 0.06 1.00 10.15 -16.53 -0.17 0.83 16 15 C 0.07 1.05 6.73 -83.93 -0.56 0.48 16 16 N -0.89 -9.12 9.12 32.31 0.29 -8.83 16 17 C -0.06 -0.83 9.96 -39.36 -0.39 -1.22 16 18 C -0.22 -3.83 9.98 -39.41 -0.39 -4.22 16 19 C 0.50 10.99 6.80 -15.48 -0.11 10.88 16 20 O -0.55 -14.07 13.18 4.81 0.06 -14.00 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.08 1.71 6.12 -51.93 -0.32 1.39 16 24 H 0.05 1.67 6.00 -51.93 -0.31 1.36 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.15 2.05 7.83 -52.49 -0.41 1.64 16 28 H 0.39 3.42 8.84 -40.82 -0.36 3.06 16 29 H 0.39 3.18 8.86 -40.82 -0.36 2.82 16 30 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 264.54 15.07 3.99 3.99 Total: -1.00 -34.52 264.54 -5.99 -40.51 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.82 Total: 4.19 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.98 Total: -6.87 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.78 Total: -44.96 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.06 Total: -14.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.52 -5.99 -40.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725249558.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.508 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds