Wall clock time and date at job start Mon Mar 30 2020 02:56:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47059 * 2 1
4 4 C 1.53002 * 109.46702 * 119.99684 * 2 1 3
5 5 C 1.50703 * 109.46984 * 184.99873 * 4 2 1
6 6 H 1.08003 * 119.99655 * 0.02562 * 5 4 2
7 7 C 1.37873 * 120.00117 * 179.97438 * 5 4 2
8 8 N 1.31511 * 120.00260 * 180.02562 * 7 5 4
9 9 Si 1.86801 * 120.00077 * 0.02562 * 7 5 4
10 10 H 1.48501 * 109.47006 * 89.99492 * 9 7 5
11 11 H 1.48503 * 109.47200 * 209.99393 * 9 7 5
12 12 H 1.48499 * 109.46960 * 329.99449 * 9 7 5
13 13 N 1.46492 * 109.47118 * 239.99396 * 2 1 3
14 14 C 1.36022 * 119.62059 * 300.00479 * 13 2 1
15 15 C 1.35218 * 120.82119 * 180.02562 * 14 13 2
16 16 C 1.40265 * 120.03959 * 359.97438 * 15 14 13
17 17 C 1.36774 * 119.24262 * 0.28366 * 16 15 14
18 18 N 1.40042 * 120.39871 * 179.72400 * 17 16 15
19 19 C 1.34677 * 119.61385 * 120.02313 * 13 2 1
20 20 O 1.22066 * 120.03593 * 0.02562 * 19 13 2
21 21 H 1.08996 * 109.47059 * 179.97438 * 1 2 3
22 22 H 1.09002 * 109.47385 * 300.00363 * 1 2 3
23 23 H 1.09004 * 109.46724 * 60.00304 * 1 2 3
24 24 H 1.08995 * 109.47493 * 304.99764 * 4 2 1
25 25 H 1.09003 * 109.47056 * 65.00211 * 4 2 1
26 26 H 0.96995 * 120.00625 * 180.02562 * 8 7 5
27 27 H 1.07995 * 119.58719 * 0.02562 * 14 13 2
28 28 H 1.07993 * 119.98102 * 179.97438 * 15 14 13
29 29 H 1.08002 * 120.37422 * 180.02562 * 16 15 14
30 30 H 0.97001 * 119.99862 * 359.97438 * 18 17 16
31 31 H 0.96998 * 119.99886 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0855 0.5397
7 6 4.2302 -1.1926 2.3585
8 7 5.5409 -1.0994 2.4142
9 14 3.3013 -2.1076 3.6961
10 1 3.1706 -3.5378 3.3183
11 1 4.0446 -2.0000 4.9772
12 1 1.9503 -1.5124 3.8562
13 7 2.0183 -0.6907 -1.1960
14 6 1.6849 -1.9930 -1.4035
15 6 2.1226 -2.6542 -2.4988
16 6 2.9305 -1.9978 -3.4390
17 6 3.2715 -0.6899 -3.2298
18 7 4.0816 -0.0129 -4.1498
19 6 2.7925 -0.0289 -2.0772
20 8 3.0842 1.1394 -1.8774
21 1 -0.3633 -1.0276 -0.0005
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 1.6054 -0.2617 2.1370
25 1 1.7516 -1.7715 1.2057
26 1 6.0252 -1.5061 3.1496
27 1 1.0629 -2.5053 -0.6845
28 1 1.8500 -3.6881 -2.6498
29 1 3.2828 -2.5206 -4.3160
30 1 4.4048 -0.4716 -4.9410
31 1 4.3195 0.9148 -3.9959
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000725249563.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:54
Heat of formation + Delta-G solvation = -7.039478 kcal
Electronic energy + Delta-G solvation = -15397.215161 eV
Core-core repulsion = 12871.849225 eV
Total energy + Delta-G solvation = -2525.365937 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.77609 -36.57224 -35.92261 -33.56555 -32.24873 -30.30856 -28.08903 -27.93818
-24.17883 -22.70395 -22.13283 -19.97026 -17.51518 -16.90193 -16.74040 -16.07205
-15.06227 -14.95189 -14.73870 -14.30007 -13.71335 -13.07147 -12.59774 -12.34030
-12.10352 -11.91545 -11.89161 -11.54694 -11.28733 -10.99396 -10.86728 -10.34311
-9.96755 -9.73488 -9.29224 -9.24239 -8.56705 -8.51787 -6.55092 -6.04073
-4.03493 1.63976 2.50469 3.25936 3.29589 3.34844 3.35502 4.32463
4.37616 4.41394 5.10851 5.27780 5.31942 5.47377 5.63279 5.67425
5.71817 5.82693 6.22179 6.31729 6.43108 6.48101 6.48827 6.74279
6.95232 7.05623 7.33136 7.63462 7.69795 7.91601 8.15015 8.50656
8.68934 9.04379 9.55501 11.09428
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.028756 B = 0.009950 C = 0.009220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.491952 B = 2813.318317 C = 3036.240492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.122 3.878
3 H 0.109 0.891
4 C -0.021 4.021
5 C -0.519 4.519
6 H 0.075 0.925
7 C 0.069 3.931
8 N -0.898 5.898
9 Si 0.877 3.123
10 H -0.277 1.277
11 H -0.287 1.287
12 H -0.266 1.266
13 N -0.455 5.455
14 C 0.097 3.903
15 C -0.200 4.200
16 C -0.145 4.145
17 C 0.092 3.908
18 N -0.863 5.863
19 C 0.513 3.487
20 O -0.560 6.560
21 H 0.057 0.943
22 H 0.072 0.928
23 H 0.052 0.948
24 H 0.035 0.965
25 H 0.018 0.982
26 H 0.263 0.737
27 H 0.150 0.850
28 H 0.133 0.867
29 H 0.120 0.880
30 H 0.396 0.604
31 H 0.402 0.598
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.211 -3.098 -9.509 13.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.021 3.979
3 H 0.127 0.873
4 C -0.058 4.058
5 C -0.557 4.557
6 H 0.093 0.907
7 C -0.132 4.132
8 N -0.537 5.537
9 Si 0.704 3.296
10 H -0.203 1.203
11 H -0.213 1.213
12 H -0.190 1.190
13 N -0.165 5.165
14 C -0.030 4.030
15 C -0.223 4.223
16 C -0.174 4.174
17 C -0.015 4.015
18 N -0.405 5.405
19 C 0.311 3.689
20 O -0.444 6.444
21 H 0.076 0.924
22 H 0.091 0.909
23 H 0.071 0.929
24 H 0.053 0.947
25 H 0.036 0.964
26 H 0.073 0.927
27 H 0.167 0.833
28 H 0.151 0.849
29 H 0.138 0.862
30 H 0.224 0.776
31 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -8.921 -2.371 -9.160 13.004
hybrid contribution 0.055 -0.627 0.564 0.845
sum -8.866 -2.998 -8.596 12.708
Atomic orbital electron populations
1.22211 0.95285 1.02093 1.02186 1.21678 0.92512 0.99519 0.84202
0.87320 1.20006 0.98420 0.95305 0.92114 1.21041 0.89233 1.35394
1.10000 0.90726 1.25005 0.94698 0.95835 0.97695 1.69917 1.06562
1.45052 1.32147 0.86836 0.80430 0.80520 0.81816 1.20270 1.21315
1.19024 1.45018 1.40597 1.10345 1.20531 1.21440 0.99234 0.84590
0.97772 1.20073 1.05514 1.00484 0.96252 1.20436 1.02943 0.92835
1.01221 1.18390 0.97773 0.92918 0.92394 1.41987 1.57615 1.15678
1.25258 1.16536 0.81094 0.87332 0.83927 1.90895 1.59704 1.16384
1.77433 0.92390 0.90936 0.92876 0.94733 0.96396 0.92726 0.83298
0.84912 0.86241 0.77585 0.76936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.41 9.15 37.16 0.34 -2.07 16
2 C 0.12 2.46 2.56 -67.93 -0.17 2.29 16
3 H 0.11 2.45 6.86 -51.93 -0.36 2.10 16
4 C -0.02 -0.48 3.44 -27.88 -0.10 -0.57 16
5 C -0.52 -14.88 9.39 -34.44 -0.32 -15.21 16
6 H 0.07 2.45 7.99 -52.48 -0.42 2.03 16
7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16
8 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16
9 Si 0.88 21.30 27.47 -169.99 -4.67 16.64 16
10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16
13 N -0.45 -9.05 2.25 -112.38 -0.25 -9.31 16
14 C 0.10 1.63 8.98 -16.77 -0.15 1.48 16
15 C -0.20 -2.99 10.00 -39.90 -0.40 -3.39 16
16 C -0.14 -2.23 9.94 -39.35 -0.39 -2.63 16
17 C 0.09 1.66 6.78 -83.50 -0.57 1.10 16
18 N -0.86 -12.90 9.09 32.54 0.30 -12.61 16
19 C 0.51 11.04 7.43 -15.17 -0.11 10.93 16
20 O -0.56 -13.73 15.72 4.86 0.08 -13.65 16
21 H 0.06 0.77 7.21 -51.93 -0.37 0.39 16
22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
24 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16
25 H 0.02 0.39 6.49 -51.93 -0.34 0.05 16
26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
27 H 0.15 2.14 6.77 -52.49 -0.36 1.78 16
28 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16
29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
30 H 0.40 4.48 8.85 -40.82 -0.36 4.11 16
31 H 0.40 6.19 8.29 -40.82 -0.34 5.85 16
LS Contribution 262.75 15.07 3.96 3.96
Total: -1.00 -34.25 262.75 -5.56 -39.81
By element:
Atomic # 1 Polarization: 12.47 SS G_CDS: -3.77 Total: 8.70 kcal
Atomic # 6 Polarization: -4.17 SS G_CDS: -1.97 Total: -6.14 kcal
Atomic # 7 Polarization: -50.13 SS G_CDS: 0.82 Total: -49.31 kcal
Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.65 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.64 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -34.25 -5.56 -39.81 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000725249563.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.774 kcal
(2) G-P(sol) polarization free energy of solvation -34.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds