Wall clock time and date at job start Mon Mar 30 2020 02:56:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 109.47059 * 2 1
4 4 C 1.53002 * 109.46702 * 119.99684 * 2 1 3
5 5 C 1.50703 * 109.46984 * 184.99873 * 4 2 1
6 6 H 1.08003 * 119.99655 * 0.02562 * 5 4 2
7 7 C 1.37873 * 120.00117 * 179.97438 * 5 4 2
8 8 N 1.31511 * 120.00260 * 180.02562 * 7 5 4
9 9 Si 1.86801 * 120.00077 * 0.02562 * 7 5 4
10 10 H 1.48501 * 109.47006 * 89.99492 * 9 7 5
11 11 H 1.48503 * 109.47200 * 209.99393 * 9 7 5
12 12 H 1.48499 * 109.46960 * 329.99449 * 9 7 5
13 13 N 1.46492 * 109.47118 * 239.99396 * 2 1 3
14 14 C 1.36022 * 119.62059 * 300.00479 * 13 2 1
15 15 C 1.35218 * 120.82119 * 180.02562 * 14 13 2
16 16 C 1.40265 * 120.03959 * 359.97438 * 15 14 13
17 17 C 1.36774 * 119.24262 * 0.28366 * 16 15 14
18 18 N 1.40042 * 120.39871 * 179.72400 * 17 16 15
19 19 C 1.34677 * 119.61385 * 120.02313 * 13 2 1
20 20 O 1.22066 * 120.03593 * 0.02562 * 19 13 2
21 21 H 1.08996 * 109.47059 * 179.97438 * 1 2 3
22 22 H 1.09002 * 109.47385 * 300.00363 * 1 2 3
23 23 H 1.09004 * 109.46724 * 60.00304 * 1 2 3
24 24 H 1.08995 * 109.47493 * 304.99764 * 4 2 1
25 25 H 1.09003 * 109.47056 * 65.00211 * 4 2 1
26 26 H 0.96995 * 120.00625 * 180.02562 * 8 7 5
27 27 H 1.07995 * 119.58719 * 0.02562 * 14 13 2
28 28 H 1.07993 * 119.98102 * 179.97438 * 15 14 13
29 29 H 1.08002 * 120.37422 * 180.02562 * 16 15 14
30 30 H 0.97001 * 119.99862 * 359.97438 * 18 17 16
31 31 H 0.96998 * 119.99886 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0855 0.5397
7 6 4.2302 -1.1926 2.3585
8 7 5.5409 -1.0994 2.4142
9 14 3.3013 -2.1076 3.6961
10 1 3.1706 -3.5378 3.3183
11 1 4.0446 -2.0000 4.9772
12 1 1.9503 -1.5124 3.8562
13 7 2.0183 -0.6907 -1.1960
14 6 1.6849 -1.9930 -1.4035
15 6 2.1226 -2.6542 -2.4988
16 6 2.9305 -1.9978 -3.4390
17 6 3.2715 -0.6899 -3.2298
18 7 4.0816 -0.0129 -4.1498
19 6 2.7925 -0.0289 -2.0772
20 8 3.0842 1.1394 -1.8774
21 1 -0.3633 -1.0276 -0.0005
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 1.6054 -0.2617 2.1370
25 1 1.7516 -1.7715 1.2057
26 1 6.0252 -1.5061 3.1496
27 1 1.0629 -2.5053 -0.6845
28 1 1.8500 -3.6881 -2.6498
29 1 3.2828 -2.5206 -4.3160
30 1 4.4048 -0.4716 -4.9410
31 1 4.3195 0.9148 -3.9959
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000725249563.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:54
Heat of formation + Delta-G solvation = -32.709094 kcal
Electronic energy + Delta-G solvation = -15398.328280 eV
Core-core repulsion = 12871.849225 eV
Total energy + Delta-G solvation = -2526.479055 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.22964 -38.10867 -37.35587 -35.24442 -34.09971 -31.81029 -29.84400 -29.27521
-25.63077 -24.51400 -23.56492 -21.54340 -19.03354 -18.77749 -18.32017 -17.43647
-16.66545 -16.34265 -16.22397 -16.05722 -15.06434 -14.83636 -14.18944 -14.13411
-13.67096 -13.34506 -13.18946 -12.93820 -12.73375 -12.57379 -12.46160 -11.97166
-11.77353 -11.46435 -11.36996 -10.87571 -10.76486 -9.87844 -8.27592 -7.89135
-6.34063 0.29036 1.11427 1.36567 1.40848 1.51808 1.88106 2.36798
2.93157 3.07284 3.17022 3.75175 4.01786 4.13646 4.26822 4.38352
4.51283 4.54723 4.83537 4.89970 5.01185 5.12623 5.21146 5.31225
5.37745 5.52070 5.61201 5.94979 6.25742 6.29972 6.55340 6.74077
7.05428 7.19580 7.29262 8.90681
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.028756 B = 0.009950 C = 0.009220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.491952 B = 2813.318317 C = 3036.240492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.120 3.880
3 H 0.065 0.935
4 C -0.015 4.015
5 C -0.525 4.525
6 H 0.008 0.992
7 C -0.001 4.001
8 N -0.958 5.958
9 Si 0.960 3.040
10 H -0.259 1.259
11 H -0.291 1.291
12 H -0.234 1.234
13 N -0.458 5.458
14 C 0.069 3.931
15 C -0.185 4.185
16 C -0.127 4.127
17 C 0.060 3.940
18 N -0.859 5.859
19 C 0.479 3.521
20 O -0.619 6.619
21 H 0.087 0.913
22 H 0.088 0.912
23 H 0.058 0.942
24 H 0.046 0.954
25 H 0.045 0.955
26 H 0.265 0.735
27 H 0.180 0.820
28 H 0.179 0.821
29 H 0.158 0.842
30 H 0.413 0.587
31 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.060 -6.259 -9.327 16.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.018 3.982
3 H 0.084 0.916
4 C -0.053 4.053
5 C -0.563 4.563
6 H 0.027 0.973
7 C -0.197 4.197
8 N -0.598 5.598
9 Si 0.781 3.219
10 H -0.183 1.183
11 H -0.217 1.217
12 H -0.157 1.157
13 N -0.167 5.167
14 C -0.057 4.057
15 C -0.207 4.207
16 C -0.157 4.157
17 C -0.047 4.047
18 N -0.403 5.403
19 C 0.281 3.719
20 O -0.508 6.508
21 H 0.105 0.895
22 H 0.107 0.893
23 H 0.077 0.923
24 H 0.065 0.935
25 H 0.063 0.937
26 H 0.074 0.926
27 H 0.197 0.803
28 H 0.196 0.804
29 H 0.176 0.824
30 H 0.244 0.756
31 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -11.806 -5.573 -9.021 15.869
hybrid contribution 1.016 0.334 0.407 1.145
sum -10.790 -5.239 -8.614 14.768
Atomic orbital electron populations
1.22122 0.90640 1.04330 1.03312 1.21563 0.95960 0.97055 0.83607
0.91616 1.19945 0.94155 0.97190 0.93961 1.21267 0.92453 1.34252
1.08307 0.97312 1.26165 0.95607 0.97028 1.00903 1.70128 1.09157
1.47001 1.33563 0.85537 0.79846 0.79459 0.77017 1.18342 1.21724
1.15668 1.45112 1.40035 1.11654 1.19851 1.22142 1.00526 0.83404
0.99656 1.20724 1.03211 1.02146 0.94665 1.20985 1.01055 0.91539
1.02133 1.18541 0.99546 0.94265 0.92312 1.41920 1.57396 1.15458
1.25486 1.17240 0.81819 0.87338 0.85515 1.90836 1.62314 1.18700
1.78993 0.89457 0.89349 0.92326 0.93542 0.93730 0.92643 0.80252
0.80382 0.82405 0.75567 0.77638
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.02 9.15 71.98 0.66 -3.36 16
2 C 0.12 4.85 2.56 44.99 0.12 4.96 16
3 H 0.07 3.18 6.86 -2.39 -0.02 3.17 16
4 C -0.01 -0.67 3.44 29.85 0.10 -0.56 16
5 C -0.52 -31.08 9.39 25.60 0.24 -30.84 16
6 H 0.01 0.60 7.99 -2.91 -0.02 0.58 16
7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16
8 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16
9 Si 0.96 42.95 27.47 68.60 1.88 44.84 16
10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16
11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16
12 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16
13 N -0.46 -18.25 2.25 -627.58 -1.41 -19.66 16
14 C 0.07 2.12 8.98 83.35 0.75 2.87 16
15 C -0.19 -4.78 10.00 22.07 0.22 -4.56 16
16 C -0.13 -3.58 9.94 22.42 0.22 -3.35 16
17 C 0.06 2.18 6.78 38.22 0.26 2.44 16
18 N -0.86 -26.26 9.09 -50.96 -0.46 -26.72 16
19 C 0.48 21.66 7.43 84.99 0.63 22.29 16
20 O -0.62 -33.13 15.72 -5.53 -0.09 -33.21 16
21 H 0.09 1.90 7.21 -2.39 -0.02 1.88 16
22 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
23 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16
24 H 0.05 1.97 7.20 -2.39 -0.02 1.95 16
25 H 0.04 1.76 6.49 -2.39 -0.02 1.75 16
26 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16
27 H 0.18 4.26 6.77 -2.91 -0.02 4.24 16
28 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16
29 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16
30 H 0.41 9.09 8.85 -92.71 -0.82 8.27 16
31 H 0.40 13.06 8.29 -92.71 -0.77 12.29 16
Total: -1.00 -81.90 262.75 3.39 -78.50
By element:
Atomic # 1 Polarization: 28.53 SS G_CDS: -0.49 Total: 28.04 kcal
Atomic # 6 Polarization: -13.39 SS G_CDS: 3.66 Total: -9.73 kcal
Atomic # 7 Polarization: -106.86 SS G_CDS: -1.58 Total: -108.44 kcal
Atomic # 8 Polarization: -33.13 SS G_CDS: -0.09 Total: -33.21 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal
Total: -81.90 3.39 -78.50 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000725249563.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.795 kcal
(2) G-P(sol) polarization free energy of solvation -81.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds