Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47059 * 2 1 4 4 C 1.53002 * 109.46702 * 119.99684 * 2 1 3 5 5 C 1.50703 * 109.46984 * 184.99873 * 4 2 1 6 6 H 1.08003 * 119.99655 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00117 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00260 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00077 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47006 * 89.99492 * 9 7 5 11 11 H 1.48503 * 109.47200 * 209.99393 * 9 7 5 12 12 H 1.48499 * 109.46960 * 329.99449 * 9 7 5 13 13 N 1.46492 * 109.47118 * 239.99396 * 2 1 3 14 14 C 1.36022 * 119.62059 * 300.00479 * 13 2 1 15 15 C 1.35218 * 120.82119 * 180.02562 * 14 13 2 16 16 C 1.40265 * 120.03959 * 359.97438 * 15 14 13 17 17 C 1.36774 * 119.24262 * 0.28366 * 16 15 14 18 18 N 1.40042 * 120.39871 * 179.72400 * 17 16 15 19 19 C 1.34677 * 119.61385 * 120.02313 * 13 2 1 20 20 O 1.22066 * 120.03593 * 0.02562 * 19 13 2 21 21 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47385 * 300.00363 * 1 2 3 23 23 H 1.09004 * 109.46724 * 60.00304 * 1 2 3 24 24 H 1.08995 * 109.47493 * 304.99764 * 4 2 1 25 25 H 1.09003 * 109.47056 * 65.00211 * 4 2 1 26 26 H 0.96995 * 120.00625 * 180.02562 * 8 7 5 27 27 H 1.07995 * 119.58719 * 0.02562 * 14 13 2 28 28 H 1.07993 * 119.98102 * 179.97438 * 15 14 13 29 29 H 1.08002 * 120.37422 * 180.02562 * 16 15 14 30 30 H 0.97001 * 119.99862 * 359.97438 * 18 17 16 31 31 H 0.96998 * 119.99886 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5397 7 6 4.2302 -1.1926 2.3585 8 7 5.5409 -1.0994 2.4142 9 14 3.3013 -2.1076 3.6961 10 1 3.1706 -3.5378 3.3183 11 1 4.0446 -2.0000 4.9772 12 1 1.9503 -1.5124 3.8562 13 7 2.0183 -0.6907 -1.1960 14 6 1.6849 -1.9930 -1.4035 15 6 2.1226 -2.6542 -2.4988 16 6 2.9305 -1.9978 -3.4390 17 6 3.2715 -0.6899 -3.2298 18 7 4.0816 -0.0129 -4.1498 19 6 2.7925 -0.0289 -2.0772 20 8 3.0842 1.1394 -1.8774 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2057 26 1 6.0252 -1.5061 3.1496 27 1 1.0629 -2.5053 -0.6845 28 1 1.8500 -3.6881 -2.6498 29 1 3.2828 -2.5206 -4.3160 30 1 4.4048 -0.4716 -4.9410 31 1 4.3195 0.9148 -3.9959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725249563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = -32.709094 kcal Electronic energy + Delta-G solvation = -15398.328280 eV Core-core repulsion = 12871.849225 eV Total energy + Delta-G solvation = -2526.479055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.22964 -38.10867 -37.35587 -35.24442 -34.09971 -31.81029 -29.84400 -29.27521 -25.63077 -24.51400 -23.56492 -21.54340 -19.03354 -18.77749 -18.32017 -17.43647 -16.66545 -16.34265 -16.22397 -16.05722 -15.06434 -14.83636 -14.18944 -14.13411 -13.67096 -13.34506 -13.18946 -12.93820 -12.73375 -12.57379 -12.46160 -11.97166 -11.77353 -11.46435 -11.36996 -10.87571 -10.76486 -9.87844 -8.27592 -7.89135 -6.34063 0.29036 1.11427 1.36567 1.40848 1.51808 1.88106 2.36798 2.93157 3.07284 3.17022 3.75175 4.01786 4.13646 4.26822 4.38352 4.51283 4.54723 4.83537 4.89970 5.01185 5.12623 5.21146 5.31225 5.37745 5.52070 5.61201 5.94979 6.25742 6.29972 6.55340 6.74077 7.05428 7.19580 7.29262 8.90681 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.009950 C = 0.009220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.491952 B = 2813.318317 C = 3036.240492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.120 3.880 3 H 0.065 0.935 4 C -0.015 4.015 5 C -0.525 4.525 6 H 0.008 0.992 7 C -0.001 4.001 8 N -0.958 5.958 9 Si 0.960 3.040 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.234 1.234 13 N -0.458 5.458 14 C 0.069 3.931 15 C -0.185 4.185 16 C -0.127 4.127 17 C 0.060 3.940 18 N -0.859 5.859 19 C 0.479 3.521 20 O -0.619 6.619 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.265 0.735 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.158 0.842 30 H 0.413 0.587 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 -6.259 -9.327 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.084 0.916 4 C -0.053 4.053 5 C -0.563 4.563 6 H 0.027 0.973 7 C -0.197 4.197 8 N -0.598 5.598 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.217 1.217 12 H -0.157 1.157 13 N -0.167 5.167 14 C -0.057 4.057 15 C -0.207 4.207 16 C -0.157 4.157 17 C -0.047 4.047 18 N -0.403 5.403 19 C 0.281 3.719 20 O -0.508 6.508 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.197 0.803 28 H 0.196 0.804 29 H 0.176 0.824 30 H 0.244 0.756 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.806 -5.573 -9.021 15.869 hybrid contribution 1.016 0.334 0.407 1.145 sum -10.790 -5.239 -8.614 14.768 Atomic orbital electron populations 1.22122 0.90640 1.04330 1.03312 1.21563 0.95960 0.97055 0.83607 0.91616 1.19945 0.94155 0.97190 0.93961 1.21267 0.92453 1.34252 1.08307 0.97312 1.26165 0.95607 0.97028 1.00903 1.70128 1.09157 1.47001 1.33563 0.85537 0.79846 0.79459 0.77017 1.18342 1.21724 1.15668 1.45112 1.40035 1.11654 1.19851 1.22142 1.00526 0.83404 0.99656 1.20724 1.03211 1.02146 0.94665 1.20985 1.01055 0.91539 1.02133 1.18541 0.99546 0.94265 0.92312 1.41920 1.57396 1.15458 1.25486 1.17240 0.81819 0.87338 0.85515 1.90836 1.62314 1.18700 1.78993 0.89457 0.89349 0.92326 0.93542 0.93730 0.92643 0.80252 0.80382 0.82405 0.75567 0.77638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.15 71.98 0.66 -3.36 16 2 C 0.12 4.85 2.56 44.99 0.12 4.96 16 3 H 0.07 3.18 6.86 -2.39 -0.02 3.17 16 4 C -0.01 -0.67 3.44 29.85 0.10 -0.56 16 5 C -0.52 -31.08 9.39 25.60 0.24 -30.84 16 6 H 0.01 0.60 7.99 -2.91 -0.02 0.58 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16 9 Si 0.96 42.95 27.47 68.60 1.88 44.84 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16 13 N -0.46 -18.25 2.25 -627.58 -1.41 -19.66 16 14 C 0.07 2.12 8.98 83.35 0.75 2.87 16 15 C -0.19 -4.78 10.00 22.07 0.22 -4.56 16 16 C -0.13 -3.58 9.94 22.42 0.22 -3.35 16 17 C 0.06 2.18 6.78 38.22 0.26 2.44 16 18 N -0.86 -26.26 9.09 -50.96 -0.46 -26.72 16 19 C 0.48 21.66 7.43 84.99 0.63 22.29 16 20 O -0.62 -33.13 15.72 -5.53 -0.09 -33.21 16 21 H 0.09 1.90 7.21 -2.39 -0.02 1.88 16 22 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.05 1.97 7.20 -2.39 -0.02 1.95 16 25 H 0.04 1.76 6.49 -2.39 -0.02 1.75 16 26 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 27 H 0.18 4.26 6.77 -2.91 -0.02 4.24 16 28 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.41 9.09 8.85 -92.71 -0.82 8.27 16 31 H 0.40 13.06 8.29 -92.71 -0.77 12.29 16 Total: -1.00 -81.90 262.75 3.39 -78.50 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.49 Total: 28.04 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 3.66 Total: -9.73 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -1.58 Total: -108.44 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.09 Total: -33.21 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -81.90 3.39 -78.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725249563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.795 kcal (2) G-P(sol) polarization free energy of solvation -81.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds