Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30016 * 120.00161 * 2 1 4 4 N 1.40105 * 119.99668 * 359.97438 * 3 2 1 5 5 C 1.46503 * 119.99642 * 179.72900 * 4 3 2 6 6 H 1.08992 * 109.47395 * 30.27756 * 5 4 3 7 7 C 1.53001 * 109.46769 * 270.27312 * 5 4 3 8 8 C 1.50699 * 109.46781 * 150.28198 * 5 4 3 9 9 H 1.07994 * 120.00358 * 34.99702 * 8 5 4 10 10 C 1.37879 * 119.99553 * 214.99858 * 8 5 4 11 11 N 1.31515 * 119.99972 * 184.91214 * 10 8 5 12 12 Si 1.86807 * 120.00216 * 4.91505 * 10 8 5 13 13 H 1.48501 * 109.46791 * 84.82915 * 12 10 8 14 14 H 1.48493 * 109.46960 * 204.83309 * 12 10 8 15 15 H 1.48502 * 109.46644 * 324.83350 * 12 10 8 16 16 C 1.46709 * 120.00327 * 179.97438 * 2 1 3 17 17 C 1.36410 * 125.97668 * 179.71416 * 16 2 1 18 18 C 1.40806 * 106.71585 * 179.85162 * 17 16 2 19 19 C 1.34803 * 107.08697 * 0.41533 * 18 17 16 20 20 O 1.34360 * 108.74716 * 359.73967 * 19 18 17 21 21 H 1.09001 * 109.47382 * 90.00118 * 1 2 3 22 22 H 1.08998 * 109.47366 * 210.00380 * 1 2 3 23 23 H 1.09004 * 109.47105 * 330.00349 * 1 2 3 24 24 H 0.96999 * 120.00116 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.46925 * 175.02856 * 7 5 4 26 26 H 1.08990 * 109.47613 * 295.03255 * 7 5 4 27 27 H 1.09010 * 109.46980 * 55.03494 * 7 5 4 28 28 H 0.97004 * 119.99741 * 180.02562 * 11 10 8 29 29 H 1.07999 * 126.63885 * 359.96592 * 17 16 2 30 30 H 1.08003 * 126.45796 * 180.14987 * 18 17 16 31 31 H 1.07996 * 125.62183 * 179.78271 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1570 1.1260 0.0000 4 7 1.4565 2.3393 -0.0005 5 6 2.1890 3.6080 0.0055 6 1 3.1415 3.4801 -0.5086 7 6 2.4435 4.0431 1.4501 8 6 1.3747 4.6615 -0.7003 9 1 0.2979 4.6566 -0.6183 10 6 2.0045 5.6316 -1.4508 11 7 1.3034 6.6065 -1.9870 12 14 3.8537 5.5612 -1.7060 13 1 4.1614 4.6702 -2.8535 14 1 4.3669 6.9259 -1.9874 15 1 4.5027 5.0313 -0.4799 16 6 2.2406 -1.2705 0.0006 17 6 3.5972 -1.4125 -0.0049 18 6 3.8597 -2.7958 0.0016 19 6 2.6676 -3.4252 0.0012 20 8 1.6917 -2.5016 0.0006 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 0.4865 2.3393 -0.0005 25 1 3.0638 4.9393 1.4557 26 1 1.4926 4.2563 1.9382 27 1 2.9556 3.2434 1.9855 28 1 1.7465 7.2888 -2.5153 29 1 4.3284 -0.6177 -0.0109 30 1 4.8328 -3.2645 0.0019 31 1 2.5212 -4.4952 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771890252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 33.333229 kcal Electronic energy + Delta-G solvation = -14541.017976 eV Core-core repulsion = 12017.402731 eV Total energy + Delta-G solvation = -2523.615245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.31878 -38.67737 -36.22323 -34.06671 -33.76958 -31.46149 -29.50056 -28.30458 -27.26661 -23.55376 -22.47943 -21.88652 -20.64804 -19.37038 -18.16924 -17.06581 -16.97769 -16.71408 -15.85798 -15.29469 -14.93033 -14.59622 -14.26892 -13.99815 -13.75098 -13.61646 -13.37062 -12.97591 -12.88472 -12.76826 -12.53526 -12.06261 -11.83317 -11.31913 -10.98416 -10.85063 -10.79933 -9.82236 -8.39220 -8.33595 -6.46697 0.25979 1.31872 1.35383 1.45487 1.52766 1.59320 2.08381 2.28032 2.58074 3.05103 3.64679 4.13825 4.17812 4.31980 4.37872 4.54150 4.60821 4.77606 4.81309 4.85715 5.00167 5.06144 5.10478 5.30555 5.34300 5.47136 5.55414 5.68850 6.07421 6.25151 6.46481 6.61594 7.21503 7.60505 8.76465 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040950 B = 0.006327 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.594697 B = 4424.249811 C = 4720.205775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.074 3.926 3 N -0.228 5.228 4 N -0.628 5.628 5 C 0.270 3.730 6 H 0.035 0.965 7 C -0.144 4.144 8 C -0.529 4.529 9 H 0.044 0.956 10 C 0.029 3.971 11 N -0.934 5.934 12 Si 0.936 3.064 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.244 1.244 16 C 0.027 3.973 17 C -0.191 4.191 18 C -0.223 4.223 19 C -0.025 4.025 20 O -0.180 6.180 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.377 0.623 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.175 0.825 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -18.472 4.613 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 N -0.042 5.042 4 N -0.367 5.367 5 C 0.167 3.833 6 H 0.053 0.947 7 C -0.204 4.204 8 C -0.569 4.569 9 H 0.062 0.938 10 C -0.171 4.171 11 N -0.572 5.572 12 Si 0.760 3.240 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.168 1.168 16 C -0.025 4.025 17 C -0.214 4.214 18 C -0.242 4.242 19 C -0.093 4.093 20 O -0.075 6.075 21 H 0.096 0.904 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.216 0.784 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.193 0.807 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.366 -17.744 4.511 18.822 hybrid contribution -0.474 0.398 -0.398 0.736 sum 3.892 -17.345 4.114 18.246 Atomic orbital electron populations 1.21000 0.90715 1.03849 1.03434 1.21288 0.93951 0.88256 1.07915 1.74016 1.28383 0.93018 1.08761 1.48716 1.06301 0.99274 1.82432 1.18698 0.92216 0.78893 0.93534 0.94727 1.22231 1.00580 0.99809 0.97733 1.21204 0.94266 1.10544 1.30839 0.93764 1.25724 1.03020 0.94396 0.93982 1.70000 1.38395 1.13975 1.34860 0.85909 0.80304 0.77728 0.80047 1.19902 1.20354 1.16783 1.19368 0.90999 0.82767 1.09322 1.22128 0.94548 0.98382 1.06354 1.22086 1.00833 0.92503 1.08768 1.25055 0.84925 0.95585 1.03738 1.84047 1.37493 1.14126 1.71839 0.90365 0.88925 0.91673 0.78362 0.92833 0.93380 0.93838 0.91957 0.84014 0.80746 0.73318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.45 71.23 0.67 -3.07 16 2 C 0.07 2.56 7.11 45.04 0.32 2.88 16 3 N -0.23 -9.24 11.21 -43.26 -0.49 -9.72 16 4 N -0.63 -27.31 5.95 -172.52 -1.03 -28.34 16 5 C 0.27 12.91 2.89 44.24 0.13 13.04 16 6 H 0.03 1.71 5.29 -2.39 -0.01 1.70 16 7 C -0.14 -6.13 9.50 71.98 0.68 -5.44 16 8 C -0.53 -29.39 9.08 25.60 0.23 -29.16 16 9 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 10 C 0.03 1.64 5.47 84.66 0.46 2.11 16 11 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 12 Si 0.94 43.57 26.99 68.60 1.85 45.42 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.24 -10.61 6.82 99.48 0.68 -9.93 16 16 C 0.03 0.84 7.04 24.06 0.17 1.00 16 17 C -0.19 -5.53 10.59 22.47 0.24 -5.30 16 18 C -0.22 -4.66 10.88 22.11 0.24 -4.42 16 19 C -0.02 -0.45 12.08 67.03 0.81 0.36 16 20 O -0.18 -4.62 10.44 -7.88 -0.08 -4.70 16 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.09 2.23 7.97 -2.39 -0.02 2.21 16 23 H 0.06 1.90 6.35 -2.39 -0.02 1.89 16 24 H 0.38 15.62 6.39 -213.32 -1.36 14.26 16 25 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 30 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.25 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -65.54 272.79 4.26 -61.29 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.26 Total: 20.07 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.96 Total: -28.00 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -1.21 Total: -94.08 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.08 Total: -4.70 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.85 Total: 45.42 kcal Total: -65.54 4.26 -61.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771890252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.623 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds