Wall clock time and date at job start Mon Mar 30 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.36605 * 111.00235 * 179.97438 * 10 9 7 12 12 N 1.29114 * 126.00167 * 359.68872 * 11 10 9 13 13 N 1.29024 * 110.25253 * 179.76591 * 12 11 10 14 14 C 1.32910 * 108.63519 * 0.42308 * 13 12 11 15 15 C 1.34391 * 126.01009 * 179.97438 * 11 10 9 16 16 C 1.50540 * 129.25306 * 0.21232 * 15 11 10 17 17 C 1.53436 * 108.31879 * 163.51452 * 16 15 11 18 18 C 1.53108 * 109.55290 * 49.71265 * 17 16 15 19 19 C 1.50600 * 129.15579 * 179.97438 * 14 13 12 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 24 24 H 1.08996 * 109.68969 * 283.23222 * 16 15 11 25 25 H 1.09000 * 109.69156 * 43.81856 * 16 15 11 26 26 H 1.08993 * 109.46421 * 289.68293 * 17 16 15 27 27 H 1.09008 * 109.45709 * 169.73206 * 17 16 15 28 28 H 1.09004 * 109.45511 * 169.88856 * 18 17 16 29 29 H 1.09004 * 109.45718 * 49.95075 * 18 17 16 30 30 H 1.08996 * 109.69071 * 283.13658 * 19 14 13 31 31 H 1.08996 * 109.69024 * 43.67596 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 7 1.5544 -4.8165 -0.0019 12 7 0.2744 -4.9858 0.0032 13 7 -0.0097 -6.2443 -0.0040 14 6 1.1253 -6.9360 -0.0049 15 6 2.1334 -6.0293 -0.0024 16 6 3.5958 -6.3867 0.0019 17 6 3.7313 -7.8588 0.4128 18 6 2.7786 -8.7148 -0.4262 19 6 1.3297 -8.4280 -0.0117 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8399 -3.5490 0.7803 24 1 4.0117 -6.2437 -0.9954 25 1 4.1259 -5.7559 0.7155 26 1 3.4814 -7.9657 1.4683 27 1 4.7569 -8.1889 0.2476 28 1 3.0005 -9.7696 -0.2644 29 1 2.9085 -8.4745 -1.4815 30 1 1.1463 -8.8283 0.9854 31 1 0.6456 -8.8892 -0.7240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885579104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:01 Heat of formation + Delta-G solvation = 109.171742 kcal Electronic energy + Delta-G solvation = -14925.716116 eV Core-core repulsion = 12437.682227 eV Total energy + Delta-G solvation = -2488.033889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.92449 -37.16096 -36.16022 -33.15281 -31.35386 -29.85745 -29.45787 -26.64676 -24.06515 -22.95425 -22.34134 -20.46423 -19.46759 -17.86383 -16.41933 -16.17414 -15.22965 -14.65570 -14.11153 -13.92116 -13.86511 -13.47548 -13.25089 -12.60570 -12.11368 -11.95902 -11.26648 -11.14862 -11.09417 -10.94666 -10.93131 -10.82670 -10.41929 -10.26882 -10.05059 -9.54554 -8.73195 -8.44890 -8.07935 -6.25682 -4.34156 2.13964 2.67209 2.97274 3.21548 3.26552 3.28910 4.24730 4.39065 4.73267 4.82321 5.01524 5.04759 5.10479 5.34933 5.51894 5.53286 5.58361 5.67998 5.81562 5.90994 5.97936 6.11875 6.24040 6.25593 6.61539 6.87093 7.08559 7.44036 7.58561 7.85032 8.26123 8.69524 9.07755 9.31653 10.84735 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.057936 B = 0.006165 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.172689 B = 4540.574097 C = 4968.170070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.911 3.089 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.183 3.817 10 N -0.422 5.422 11 N -0.106 5.106 12 N -0.103 5.103 13 N -0.277 5.277 14 C -0.029 4.029 15 C -0.033 4.033 16 C -0.037 4.037 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.026 4.026 20 H 0.268 0.732 21 H 0.019 0.981 22 H 0.053 0.947 23 H 0.355 0.645 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -14.211 1.149 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.058 3.942 10 N -0.151 5.151 11 N 0.021 4.979 12 N -0.083 5.083 13 N -0.141 5.141 14 C -0.173 4.173 15 C -0.169 4.169 16 C -0.076 4.076 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.066 4.066 20 H 0.078 0.922 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.178 0.822 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.857 -13.312 0.483 14.982 hybrid contribution 1.155 0.880 0.837 1.676 sum 8.012 -12.431 1.320 14.848 Atomic orbital electron populations 1.69978 1.06169 1.27701 1.48195 1.24963 0.94971 0.99556 0.94428 0.86360 0.79315 0.81762 0.78832 1.19859 1.20979 1.19988 1.20829 0.93547 0.88971 1.54065 0.91335 1.20171 0.90413 0.84287 0.99306 1.63196 1.15719 0.90154 1.46065 1.46441 1.04732 1.04479 1.42223 1.78856 0.94403 1.12533 1.22512 1.74810 1.24477 0.96673 1.18096 1.21473 0.88867 0.97282 1.09645 1.21442 0.98440 0.83900 1.13151 1.20032 0.87939 0.96790 1.02849 1.21580 0.99736 0.93454 1.00395 1.21625 0.93969 0.99644 1.00427 1.19851 0.96887 0.87539 1.02294 0.92198 0.96345 0.92888 0.82195 0.89810 0.90534 0.91455 0.90869 0.91020 0.91419 0.90485 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -14.44 9.32 -34.44 -0.32 -14.76 16 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.18 4.80 4.90 -4.98 -0.02 4.78 16 10 N -0.42 -9.12 7.21 -11.41 -0.08 -9.21 16 11 N -0.11 -2.25 4.24 33.39 0.14 -2.11 16 12 N -0.10 -2.44 11.96 60.35 0.72 -1.72 16 13 N -0.28 -5.95 12.40 33.16 0.41 -5.54 16 14 C -0.03 -0.50 7.11 -83.12 -0.59 -1.09 16 15 C -0.03 -0.57 6.91 -82.50 -0.57 -1.14 16 16 C -0.04 -0.45 6.27 -27.73 -0.17 -0.63 16 17 C -0.11 -1.06 5.90 -26.45 -0.16 -1.22 16 18 C -0.12 -1.11 5.90 -26.46 -0.16 -1.27 16 19 C -0.03 -0.32 6.30 -27.72 -0.17 -0.49 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.53 8.08 -51.93 -0.42 0.11 16 22 H 0.05 1.55 8.09 -51.93 -0.42 1.13 16 23 H 0.36 6.72 8.93 -181.37 -1.62 5.10 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -31.56 264.33 -6.76 -38.32 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.38 Total: -0.20 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.26 Total: -14.12 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 1.93 Total: -43.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.56 -6.76 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885579104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.489 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds