Wall clock time and date at job start Mon Mar 30 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.36605 * 111.00235 * 179.97438 * 10 9 7 12 12 N 1.29114 * 126.00167 * 359.68872 * 11 10 9 13 13 N 1.29024 * 110.25253 * 179.76591 * 12 11 10 14 14 C 1.32910 * 108.63519 * 0.42308 * 13 12 11 15 15 C 1.34391 * 126.01009 * 179.97438 * 11 10 9 16 16 C 1.50540 * 129.25306 * 0.21232 * 15 11 10 17 17 C 1.53436 * 108.31879 * 163.51452 * 16 15 11 18 18 C 1.53108 * 109.55290 * 49.71265 * 17 16 15 19 19 C 1.50600 * 129.15579 * 179.97438 * 14 13 12 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 24 24 H 1.08996 * 109.68969 * 283.23222 * 16 15 11 25 25 H 1.09000 * 109.69156 * 43.81856 * 16 15 11 26 26 H 1.08993 * 109.46421 * 289.68293 * 17 16 15 27 27 H 1.09008 * 109.45709 * 169.73206 * 17 16 15 28 28 H 1.09004 * 109.45511 * 169.88856 * 18 17 16 29 29 H 1.09004 * 109.45718 * 49.95075 * 18 17 16 30 30 H 1.08996 * 109.69071 * 283.13658 * 19 14 13 31 31 H 1.08996 * 109.69024 * 43.67596 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 7 1.5544 -4.8165 -0.0019 12 7 0.2744 -4.9858 0.0032 13 7 -0.0097 -6.2443 -0.0040 14 6 1.1253 -6.9360 -0.0049 15 6 2.1334 -6.0293 -0.0024 16 6 3.5958 -6.3867 0.0019 17 6 3.7313 -7.8588 0.4128 18 6 2.7786 -8.7148 -0.4262 19 6 1.3297 -8.4280 -0.0117 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8399 -3.5490 0.7803 24 1 4.0117 -6.2437 -0.9954 25 1 4.1259 -5.7559 0.7155 26 1 3.4814 -7.9657 1.4683 27 1 4.7569 -8.1889 0.2476 28 1 3.0005 -9.7696 -0.2644 29 1 2.9085 -8.4745 -1.4815 30 1 1.1463 -8.8283 0.9854 31 1 0.6456 -8.8892 -0.7240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885579104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:01 Heat of formation + Delta-G solvation = 86.688800 kcal Electronic energy + Delta-G solvation = -14926.691049 eV Core-core repulsion = 12437.682227 eV Total energy + Delta-G solvation = -2489.008823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.45547 -38.47028 -37.58737 -35.16151 -32.88719 -31.12680 -30.80415 -28.58280 -25.43748 -24.57478 -23.56214 -22.12442 -20.62040 -19.50825 -18.30664 -17.84659 -16.85410 -16.13161 -15.52793 -15.07626 -14.86469 -14.69114 -14.65241 -14.26564 -14.03289 -13.06302 -12.95249 -12.79255 -12.54034 -12.42383 -12.31403 -12.04247 -11.79071 -11.62565 -11.47593 -11.27845 -10.78034 -9.91402 -9.84426 -8.36497 -6.54563 0.62704 1.08590 1.41902 1.45297 1.50117 1.54328 2.34206 2.98497 3.10006 3.56234 3.84009 3.92569 4.06923 4.08027 4.37769 4.51477 4.63666 4.64979 4.77005 4.95150 4.98414 5.07580 5.14504 5.25270 5.27588 5.43235 5.49677 5.52244 5.63026 5.75021 6.50230 6.58797 7.17509 7.50262 8.75751 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.057936 B = 0.006165 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.172689 B = 4540.574097 C = 4968.170070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.086 0.914 9 C 0.208 3.792 10 N -0.412 5.412 11 N -0.122 5.122 12 N -0.169 5.169 13 N -0.302 5.302 14 C -0.032 4.032 15 C -0.022 4.022 16 C -0.041 4.041 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.029 4.029 20 H 0.271 0.729 21 H -0.016 1.016 22 H 0.011 0.989 23 H 0.371 0.629 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 -15.461 1.360 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.588 4.588 8 H 0.104 0.896 9 C 0.081 3.919 10 N -0.141 5.141 11 N 0.004 4.996 12 N -0.148 5.148 13 N -0.165 5.165 14 C -0.176 4.176 15 C -0.159 4.159 16 C -0.080 4.080 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.068 4.068 20 H 0.079 0.921 21 H 0.002 0.998 22 H 0.029 0.971 23 H 0.195 0.805 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.892 -14.583 0.701 17.636 hybrid contribution 0.216 1.089 0.770 1.351 sum 10.108 -13.494 1.471 16.925 Atomic orbital electron populations 1.70143 1.08329 1.28887 1.49353 1.26084 0.95784 1.03916 0.93490 0.85127 0.77850 0.76145 0.79631 1.18746 1.20933 1.18325 1.21249 0.94451 0.89344 1.53783 0.89601 1.19600 0.90330 0.86263 0.95709 1.62912 1.14504 0.89646 1.47082 1.46486 1.04705 1.05072 1.43289 1.78838 0.95919 1.13857 1.26141 1.74741 1.26566 0.96548 1.18595 1.22494 0.87491 0.99863 1.07780 1.22489 1.01086 0.82127 1.10201 1.20401 0.84240 0.99430 1.03949 1.21634 1.01704 0.90839 1.00432 1.21663 0.91611 1.01756 1.00139 1.20170 0.99384 0.83593 1.03621 0.92057 0.99777 0.97085 0.80506 0.88809 0.89324 0.91150 0.87502 0.87524 0.91713 0.88849 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.55 -30.11 9.32 25.60 0.24 -29.87 16 8 H 0.09 4.30 7.81 -2.91 -0.02 4.28 16 9 C 0.21 11.44 4.90 85.56 0.42 11.86 16 10 N -0.41 -18.23 7.21 -190.01 -1.37 -19.60 16 11 N -0.12 -5.33 4.24 -48.27 -0.20 -5.53 16 12 N -0.17 -8.44 11.96 37.02 0.44 -8.00 16 13 N -0.30 -13.39 12.40 -48.99 -0.61 -14.00 16 14 C -0.03 -1.09 7.11 41.75 0.30 -0.79 16 15 C -0.02 -0.76 6.91 41.50 0.29 -0.47 16 16 C -0.04 -0.89 6.27 29.94 0.19 -0.70 16 17 C -0.11 -1.54 5.90 30.78 0.18 -1.36 16 18 C -0.11 -1.65 5.90 30.77 0.18 -1.47 16 19 C -0.03 -0.62 6.30 29.96 0.19 -0.43 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H -0.02 -0.95 8.08 -2.39 -0.02 -0.97 16 22 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 23 H 0.37 14.04 8.93 -210.56 -1.88 12.16 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 1.01 8.12 -2.38 -0.02 0.99 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.81 264.33 2.27 -70.54 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.75 Total: 10.48 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 2.44 Total: -22.34 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -1.45 Total: -103.05 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.81 2.27 -70.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885579104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.229 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds