Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48510 * 109.46865 * 240.00166 * 3 2 1 5 5 H 1.48493 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 120.00359 * 3 2 1 7 7 C 1.38814 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 164.46427 * 7 2 1 9 9 N 1.36935 * 119.99712 * 344.46377 * 7 2 1 10 10 C 1.47089 * 121.01347 * 155.88998 * 9 7 2 11 11 C 1.53259 * 109.21692 * 116.44110 * 10 9 7 12 12 N 1.46553 * 109.24222 * 45.98772 * 11 10 9 13 13 N 1.39742 * 127.32161 * 161.52335 * 12 11 10 14 14 C 1.31018 * 108.17447 * 179.18689 * 13 12 11 15 15 C 1.40064 * 108.25362 * 0.60593 * 14 13 12 16 16 C 1.50705 * 126.12369 * 179.85359 * 15 14 13 17 17 N 1.46907 * 109.46724 * 259.69348 * 16 15 14 18 18 C 1.34644 * 107.75197 * 359.59280 * 15 14 13 19 19 C 1.47507 * 121.01269 * 335.90860 * 9 7 2 20 20 H 0.96999 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.51057 * 236.36651 * 10 9 7 22 22 H 1.09000 * 109.51022 * 356.51904 * 10 9 7 23 23 H 1.09003 * 109.50569 * 165.91907 * 11 10 9 24 24 H 1.09000 * 109.50551 * 286.05555 * 11 10 9 25 25 H 1.07999 * 125.86948 * 180.42519 * 14 13 12 26 26 H 1.08994 * 109.47492 * 139.69655 * 16 15 14 27 27 H 1.08999 * 109.47043 * 19.68557 * 16 15 14 28 28 H 1.00897 * 111.00474 * 56.04638 * 17 16 15 29 29 H 1.00903 * 110.99288 * 179.97438 * 17 16 15 30 30 H 1.09005 * 109.94372 * 103.52806 * 19 9 7 31 31 H 1.08994 * 109.94735 * 342.28025 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2511 9 7 1.3631 -2.3665 0.3166 10 6 1.8638 -3.6654 -0.1584 11 6 2.2727 -4.5197 1.0465 12 7 1.2230 -4.4494 2.0668 13 7 1.0187 -5.3280 3.1341 14 6 -0.0128 -4.9034 3.8213 15 6 -0.5058 -3.7473 3.2033 16 6 -1.6883 -2.9316 3.6589 17 7 -2.8626 -3.2750 2.8457 18 6 0.2693 -3.4918 2.1324 19 6 0.1424 -2.3563 1.1446 20 1 -0.4850 0.8400 -0.0004 21 1 1.0793 -4.1757 -0.7172 22 1 2.7282 -3.5085 -0.8036 23 1 2.4049 -5.5546 0.7309 24 1 3.2080 -4.1421 1.4598 25 1 -0.4155 -5.3670 4.7097 26 1 -1.4643 -1.8712 3.5439 27 1 -1.8965 -3.1475 4.7069 28 1 -3.0522 -4.2652 2.8843 29 1 -3.6694 -2.7412 3.1323 30 1 -0.7349 -2.5069 0.5155 31 1 0.0616 -1.4082 1.6762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958679779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = 103.953598 kcal Electronic energy + Delta-G solvation = -15469.520853 eV Core-core repulsion = 12981.260688 eV Total energy + Delta-G solvation = -2488.260165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73751 -36.17979 -34.50603 -32.70868 -30.76226 -30.04024 -27.98502 -25.70423 -23.94747 -23.15957 -21.60243 -19.81082 -18.19437 -16.59388 -16.10066 -15.35446 -15.07923 -14.57717 -14.05872 -13.70110 -13.58065 -13.15689 -12.96131 -12.50116 -12.06159 -11.62353 -11.53711 -11.12594 -10.87080 -10.72454 -10.62200 -10.11500 -10.00897 -9.93103 -8.79371 -8.39304 -8.25818 -7.67430 -6.95594 -5.91265 -3.33982 2.63977 3.17413 3.33321 3.36105 3.39910 3.41107 4.38862 5.10937 5.17468 5.19564 5.32535 5.55731 5.65522 5.69737 5.74213 5.85731 5.97575 6.24610 6.33085 6.51254 6.56184 6.75566 7.14817 7.26255 7.37995 7.56604 7.66352 7.79742 7.86370 8.20734 8.41615 9.02764 9.64629 10.19050 11.19115 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.010431 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.124558 B = 2683.694344 C = 3320.461048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.263 4.263 8 H 0.072 0.928 9 N -0.599 5.599 10 C 0.129 3.871 11 C 0.115 3.885 12 N -0.362 5.362 13 N -0.323 5.323 14 C 0.042 3.958 15 C -0.269 4.269 16 C 0.151 3.849 17 N -0.842 5.842 18 C 0.121 3.879 19 C 0.236 3.764 20 H 0.259 0.741 21 H 0.036 0.964 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.170 0.830 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.334 0.666 29 H 0.334 0.666 30 H 0.062 0.938 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -5.997 4.822 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.322 5.322 10 C 0.001 3.999 11 C -0.009 4.009 12 N -0.144 5.144 13 N -0.144 5.144 14 C -0.144 4.144 15 C -0.281 4.281 16 C 0.020 3.980 17 N -0.371 5.371 18 C -0.009 4.009 19 C 0.110 3.890 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.187 0.813 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.479 -6.459 3.978 7.601 hybrid contribution -0.550 1.001 1.075 1.569 sum -1.029 -5.458 5.052 7.508 Atomic orbital electron populations 1.69975 1.05124 1.26135 1.53216 1.25040 0.95443 0.98464 1.00291 0.86294 0.78876 0.82966 0.78173 1.20764 1.21409 1.20934 1.19119 0.92378 0.84060 1.43619 0.91055 1.44250 1.29450 1.01223 1.57230 1.21254 0.99123 0.87531 0.92012 1.22502 0.88732 1.01323 0.88330 1.48440 1.24254 1.19722 1.21971 1.77087 1.20372 1.16711 1.00233 1.23605 0.95154 0.95972 0.99710 1.19366 1.04557 1.02744 1.01429 1.19798 0.87285 0.98493 0.92388 1.58672 1.07039 1.10453 1.60980 1.22469 0.88331 0.92956 0.97175 1.19863 0.88996 0.91987 0.88148 0.93113 0.94643 0.89913 0.90441 0.90846 0.81307 0.90661 0.95943 0.85370 0.85391 0.92007 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 11.07 55.49 0.61 -24.61 16 2 C 0.01 0.19 5.00 -17.43 -0.09 0.10 16 3 Si 0.91 21.14 29.58 -169.99 -5.03 16.11 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.98 9.67 -15.06 -0.15 -7.13 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -14.80 3.01 -172.96 -0.52 -15.32 16 10 C 0.13 2.61 6.49 -3.59 -0.02 2.59 16 11 C 0.11 2.14 7.44 -3.88 -0.03 2.11 16 12 N -0.36 -7.62 4.03 -56.93 -0.23 -7.85 16 13 N -0.32 -6.54 12.61 30.70 0.39 -6.15 16 14 C 0.04 0.75 11.97 -17.21 -0.21 0.54 16 15 C -0.27 -5.15 5.60 -105.21 -0.59 -5.74 16 16 C 0.15 2.46 7.07 -4.97 -0.04 2.42 16 17 N -0.84 -12.58 9.61 -11.40 -0.11 -12.69 16 18 C 0.12 2.66 6.71 -82.17 -0.55 2.11 16 19 C 0.24 5.75 5.11 -4.48 -0.02 5.73 16 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.33 4.56 8.99 -39.29 -0.35 4.21 16 29 H 0.33 4.12 9.08 -39.29 -0.36 3.77 16 30 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 31 H 0.11 2.79 6.46 -51.93 -0.34 2.46 16 LS Contribution 261.87 15.07 3.95 3.95 Total: -1.00 -30.26 261.87 -6.60 -36.86 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.97 Total: 6.99 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.69 Total: 2.72 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: 0.14 Total: -66.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.26 -6.60 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958679779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.809 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds