Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48510 * 109.46865 * 240.00166 * 3 2 1 5 5 H 1.48493 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 120.00359 * 3 2 1 7 7 C 1.38814 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 164.46427 * 7 2 1 9 9 N 1.36935 * 119.99712 * 344.46377 * 7 2 1 10 10 C 1.47089 * 121.01347 * 155.88998 * 9 7 2 11 11 C 1.53259 * 109.21692 * 116.44110 * 10 9 7 12 12 N 1.46553 * 109.24222 * 45.98772 * 11 10 9 13 13 N 1.39742 * 127.32161 * 161.52335 * 12 11 10 14 14 C 1.31018 * 108.17447 * 179.18689 * 13 12 11 15 15 C 1.40064 * 108.25362 * 0.60593 * 14 13 12 16 16 C 1.50705 * 126.12369 * 179.85359 * 15 14 13 17 17 N 1.46907 * 109.46724 * 259.69348 * 16 15 14 18 18 C 1.34644 * 107.75197 * 359.59280 * 15 14 13 19 19 C 1.47507 * 121.01269 * 335.90860 * 9 7 2 20 20 H 0.96999 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.51057 * 236.36651 * 10 9 7 22 22 H 1.09000 * 109.51022 * 356.51904 * 10 9 7 23 23 H 1.09003 * 109.50569 * 165.91907 * 11 10 9 24 24 H 1.09000 * 109.50551 * 286.05555 * 11 10 9 25 25 H 1.07999 * 125.86948 * 180.42519 * 14 13 12 26 26 H 1.08994 * 109.47492 * 139.69655 * 16 15 14 27 27 H 1.08999 * 109.47043 * 19.68557 * 16 15 14 28 28 H 1.00897 * 111.00474 * 56.04638 * 17 16 15 29 29 H 1.00903 * 110.99288 * 179.97438 * 17 16 15 30 30 H 1.09005 * 109.94372 * 103.52806 * 19 9 7 31 31 H 1.08994 * 109.94735 * 342.28025 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2511 9 7 1.3631 -2.3665 0.3166 10 6 1.8638 -3.6654 -0.1584 11 6 2.2727 -4.5197 1.0465 12 7 1.2230 -4.4494 2.0668 13 7 1.0187 -5.3280 3.1341 14 6 -0.0128 -4.9034 3.8213 15 6 -0.5058 -3.7473 3.2033 16 6 -1.6883 -2.9316 3.6589 17 7 -2.8626 -3.2750 2.8457 18 6 0.2693 -3.4918 2.1324 19 6 0.1424 -2.3563 1.1446 20 1 -0.4850 0.8400 -0.0004 21 1 1.0793 -4.1757 -0.7172 22 1 2.7282 -3.5085 -0.8036 23 1 2.4049 -5.5546 0.7309 24 1 3.2080 -4.1421 1.4598 25 1 -0.4155 -5.3670 4.7097 26 1 -1.4643 -1.8712 3.5439 27 1 -1.8965 -3.1475 4.7069 28 1 -3.0522 -4.2652 2.8843 29 1 -3.6694 -2.7412 3.1323 30 1 -0.7349 -2.5069 0.5155 31 1 0.0616 -1.4082 1.6762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958679779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = 81.683115 kcal Electronic energy + Delta-G solvation = -15470.486573 eV Core-core repulsion = 12981.260688 eV Total energy + Delta-G solvation = -2489.225885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.28228 -37.93324 -35.88972 -34.44391 -32.49369 -31.71792 -29.53698 -27.56730 -25.50000 -24.80335 -23.23630 -21.35275 -19.85739 -18.49877 -17.68102 -16.86772 -16.48603 -16.40503 -15.53827 -15.40410 -15.11684 -14.79718 -14.61696 -13.94774 -13.62562 -13.29853 -13.16843 -12.86073 -12.68206 -12.44035 -12.34147 -11.99692 -11.89119 -11.46311 -10.74354 -10.00427 -9.45221 -9.22184 -8.90668 -7.94196 -5.39630 1.04599 1.47777 1.50468 1.56710 1.67666 1.89422 2.47568 3.22967 3.47220 3.67691 3.91232 4.04937 4.20713 4.25828 4.34992 4.44989 4.53090 4.77227 4.86760 4.92435 5.01117 5.08005 5.36251 5.47878 5.60302 5.85713 6.18206 6.24010 6.41583 6.81165 6.87438 7.02834 7.68083 8.21240 9.15084 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.010431 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.124558 B = 2683.694344 C = 3320.461048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.044 4.044 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.274 4.274 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.128 3.872 11 C 0.118 3.882 12 N -0.374 5.374 13 N -0.334 5.334 14 C 0.051 3.949 15 C -0.262 4.262 16 C 0.155 3.845 17 N -0.855 5.855 18 C 0.087 3.913 19 C 0.259 3.741 20 H 0.254 0.746 21 H 0.034 0.966 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.214 0.786 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.344 0.656 29 H 0.349 0.651 30 H 0.029 0.971 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -7.006 5.897 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.403 4.403 8 H 0.096 0.904 9 N -0.342 5.342 10 C 0.001 3.999 11 C -0.005 4.005 12 N -0.156 5.156 13 N -0.155 5.155 14 C -0.134 4.134 15 C -0.274 4.274 16 C 0.023 3.977 17 N -0.387 5.387 18 C -0.044 4.044 19 C 0.132 3.868 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.231 0.769 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.046 0.954 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.000 -7.496 5.044 9.035 hybrid contribution -0.725 1.236 0.763 1.624 sum -0.724 -6.260 5.807 8.569 Atomic orbital electron populations 1.70136 1.06484 1.26371 1.54601 1.25800 0.96177 1.01474 1.00581 0.85299 0.77547 0.79016 0.78300 1.19773 1.21838 1.20718 1.19494 0.92893 0.85076 1.42844 0.90363 1.44495 1.29442 1.02395 1.57834 1.21407 0.99516 0.85822 0.93141 1.22485 0.88180 1.02609 0.87207 1.48651 1.24524 1.19713 1.22747 1.77066 1.21352 1.16759 1.00293 1.24266 0.93889 0.95032 1.00259 1.19792 1.04482 1.02938 1.00175 1.19760 0.86861 0.96750 0.94299 1.58546 1.07388 1.11473 1.61307 1.22211 0.90515 0.93325 0.98305 1.19223 0.87980 0.91667 0.87919 0.93662 0.94813 0.88197 0.87371 0.90554 0.76920 0.92899 0.92526 0.84296 0.83680 0.95356 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 11.07 21.65 0.24 -53.56 16 2 C -0.04 -2.41 5.00 84.86 0.42 -1.98 16 3 Si 0.97 43.88 29.58 68.60 2.03 45.91 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.27 -14.68 9.67 84.03 0.81 -13.87 16 8 H 0.08 3.98 7.88 -2.91 -0.02 3.96 16 9 N -0.62 -31.02 3.01 -701.12 -2.11 -33.13 16 10 C 0.13 5.11 6.49 86.35 0.56 5.67 16 11 C 0.12 4.21 7.44 86.46 0.64 4.85 16 12 N -0.37 -15.28 4.03 -334.03 -1.35 -16.63 16 13 N -0.33 -12.68 12.61 -56.80 -0.72 -13.39 16 14 C 0.05 1.69 11.97 85.26 1.02 2.71 16 15 C -0.26 -9.66 5.60 -20.24 -0.11 -9.77 16 16 C 0.15 4.81 7.07 85.56 0.60 5.41 16 17 N -0.86 -24.56 9.61 -189.99 -1.83 -26.39 16 18 C 0.09 3.79 6.71 41.30 0.28 4.06 16 19 C 0.26 13.03 5.11 85.55 0.44 13.47 16 20 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 22 H 0.10 3.56 7.94 -2.39 -0.02 3.55 16 23 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 24 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.21 4.88 8.06 -2.91 -0.02 4.85 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.34 8.72 8.99 -89.70 -0.81 7.92 16 29 H 0.35 8.17 9.08 -89.69 -0.81 7.35 16 30 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 4.06 6.46 -2.39 -0.02 4.05 16 Total: -1.00 -65.46 261.87 0.47 -64.99 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.47 Total: 21.64 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.67 Total: 10.56 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -5.76 Total: -143.10 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.46 0.47 -64.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958679779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.676 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds