Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 H 1.08995 * 115.56847 * 29.31106 * 3 2 1 5 5 C 1.53005 * 117.49509 * 243.61825 * 3 2 1 6 6 C 1.52994 * 60.00086 * 252.51515 * 5 3 2 7 7 H 1.09000 * 117.50082 * 107.49165 * 6 5 3 8 8 C 1.50706 * 117.49697 * 252.51397 * 6 5 3 9 9 O 1.21286 * 119.99809 * 68.61904 * 8 6 5 10 10 N 1.34774 * 119.99782 * 248.62243 * 8 6 5 11 11 C 1.37099 * 120.00222 * 179.97438 * 10 8 6 12 12 H 1.08002 * 119.99643 * 323.02453 * 11 10 8 13 13 C 1.38945 * 120.00193 * 143.02086 * 11 10 8 14 14 N 1.31410 * 120.00458 * 155.52867 * 13 11 10 15 15 Si 1.86809 * 120.00085 * 335.52878 * 13 11 10 16 16 H 1.48499 * 109.46892 * 94.43138 * 15 13 11 17 17 H 1.48494 * 109.47249 * 214.43031 * 15 13 11 18 18 H 1.48503 * 109.46691 * 334.43313 * 15 13 11 19 19 C 1.46507 * 120.00209 * 0.02562 * 10 8 6 20 20 C 1.47197 * 109.47280 * 84.54782 * 19 10 8 21 21 N 6.24887 * 145.70633 * 323.93847 * 2 1 3 22 22 H 1.08990 * 109.46888 * 60.00131 * 1 2 3 23 23 H 1.08993 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 300.00124 * 1 2 3 25 25 H 1.08997 * 109.46577 * 239.99098 * 2 1 3 26 26 H 1.09003 * 109.46680 * 120.00067 * 2 1 3 27 27 H 1.08998 * 117.49833 * 145.02041 * 5 3 2 28 28 H 1.09004 * 117.49436 * 0.02562 * 5 3 2 29 29 H 0.96991 * 120.00532 * 180.02562 * 14 13 11 30 30 H 1.08998 * 109.46884 * 204.55130 * 19 10 8 31 31 H 1.09007 * 109.46606 * 324.54419 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1961 8 6 4.0229 2.8620 0.8913 9 8 3.2158 3.6167 1.3913 10 7 5.3425 3.1001 1.0270 11 6 5.7726 4.1959 1.7299 12 1 5.2259 5.1253 1.6687 13 6 6.9116 4.1106 2.5210 14 7 7.6001 5.1944 2.8007 15 14 7.4645 2.4552 3.1871 16 1 8.4728 1.8647 2.2708 17 1 8.0656 2.6387 4.5325 18 1 6.2944 1.5463 3.2875 19 6 6.3174 2.1888 0.4225 20 6 6.5291 2.5606 -0.9859 21 7 6.6926 2.8462 -2.0725 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.7214 2.9426 -1.5345 28 1 3.0093 1.1857 -2.0159 29 1 8.3955 5.1348 3.3526 30 1 7.2618 2.2571 0.9623 31 1 5.9413 1.1670 0.4761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464722849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 24.418037 kcal Electronic energy + Delta-G solvation = -14996.154302 eV Core-core repulsion = 12472.152466 eV Total energy + Delta-G solvation = -2524.001837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47334 -37.04268 -36.02629 -34.62048 -32.28472 -31.80267 -27.77884 -25.99422 -23.78344 -22.74228 -20.31692 -18.94211 -18.34408 -16.71261 -16.49881 -15.63226 -14.68064 -14.44298 -14.08128 -13.85491 -13.55470 -13.01116 -12.60998 -12.49704 -12.35799 -12.17234 -12.01331 -11.78623 -11.44974 -11.20376 -10.93242 -10.87440 -10.52326 -10.09585 -9.91808 -9.71083 -9.26486 -8.70416 -8.05928 -6.52916 -4.11392 2.88183 3.05081 3.08629 3.16176 3.28390 3.35431 4.01346 4.13171 4.29006 4.49670 4.83248 5.01456 5.05324 5.13433 5.31734 5.33652 5.42818 5.55998 5.63409 5.80111 5.84325 5.94587 5.99319 6.12437 6.19499 6.27423 6.58158 7.36578 8.00338 8.13019 8.32481 8.80155 9.13442 9.56388 10.58726 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.008992 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.077963 B = 3113.151378 C = 3422.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.117 0.883 5 C -0.154 4.154 6 C -0.187 4.187 7 H 0.115 0.885 8 C 0.504 3.496 9 O -0.548 6.548 10 N -0.459 5.459 11 C -0.326 4.326 12 H 0.109 0.891 13 C 0.063 3.937 14 N -0.851 5.851 15 Si 0.858 3.142 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.255 1.255 19 C 0.180 3.820 20 C 0.209 3.791 21 N -0.442 5.442 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -12.339 -3.471 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.140 4.140 4 H 0.135 0.865 5 C -0.192 4.192 6 C -0.208 4.208 7 H 0.133 0.867 8 C 0.293 3.707 9 O -0.427 6.427 10 N -0.182 5.182 11 C -0.452 4.452 12 H 0.126 0.874 13 C -0.144 4.144 14 N -0.486 5.486 15 Si 0.683 3.317 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.179 1.179 19 C 0.053 3.947 20 C -0.110 4.110 21 N -0.121 5.121 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.845 -11.388 -4.688 13.632 hybrid contribution 0.671 -0.823 0.874 1.375 sum -5.174 -12.211 -3.813 13.799 Atomic orbital electron populations 1.21732 0.95510 1.01193 1.02111 1.21136 0.95969 0.94149 1.01838 1.22388 0.92247 0.98057 1.01283 0.86550 1.23016 1.03023 1.02707 0.90410 1.22467 0.96857 0.99878 1.01605 0.86725 1.19419 0.82554 0.86094 0.82668 1.90568 1.52831 1.49063 1.50264 1.43539 1.02824 1.24990 1.46835 1.19042 1.11446 0.89906 1.24839 0.87367 1.25364 0.95655 0.97379 0.95993 1.69776 1.14953 1.29079 1.34764 0.87238 0.79464 0.85117 0.79834 1.19653 1.20525 1.17886 1.19547 0.97454 0.95444 0.82238 1.29959 0.92764 0.93095 0.95194 1.81011 1.09082 1.08614 1.13428 0.92672 0.92971 0.92482 0.91978 0.91523 0.88655 0.88604 0.91269 0.86842 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.87 37.16 0.37 -1.11 16 2 C -0.09 -1.05 6.21 -26.73 -0.17 -1.22 16 3 C -0.12 -1.77 5.25 -90.62 -0.48 -2.25 16 4 H 0.12 1.93 7.60 -51.93 -0.39 1.53 16 5 C -0.15 -2.29 9.88 -26.73 -0.26 -2.55 16 6 C -0.19 -3.10 4.91 -91.77 -0.45 -3.55 16 7 H 0.11 1.58 6.52 -51.93 -0.34 1.24 16 8 C 0.50 11.21 7.35 -10.98 -0.08 11.13 16 9 O -0.55 -14.28 16.12 5.55 0.09 -14.19 16 10 N -0.46 -10.51 2.15 -117.93 -0.25 -10.76 16 11 C -0.33 -8.79 9.35 -14.93 -0.14 -8.93 16 12 H 0.11 3.33 7.90 -52.49 -0.41 2.92 16 13 C 0.06 1.65 5.23 -17.47 -0.09 1.56 16 14 N -0.85 -23.53 13.96 55.50 0.77 -22.75 16 15 Si 0.86 18.29 25.23 -169.99 -4.29 14.00 16 16 H -0.27 -5.18 6.62 56.52 0.37 -4.81 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 C 0.18 3.33 4.33 -6.83 -0.03 3.30 16 20 C 0.21 4.03 15.58 -20.78 -0.32 3.71 16 21 N -0.44 -9.06 18.53 42.13 0.78 -8.28 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 29 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.11 2.14 3.62 -51.93 -0.19 1.95 16 31 H 0.11 1.51 6.24 -51.93 -0.32 1.18 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -30.64 271.58 -4.22 -34.86 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.76 Total: 2.95 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.65 Total: 0.08 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.30 Total: -41.80 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.29 Total: 14.00 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.64 -4.22 -34.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464722849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.279 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds