Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 H 1.08995 * 115.56847 * 29.31106 * 3 2 1 5 5 C 1.53005 * 117.49509 * 243.61825 * 3 2 1 6 6 C 1.52994 * 60.00086 * 252.51515 * 5 3 2 7 7 H 1.09000 * 117.50082 * 107.49165 * 6 5 3 8 8 C 1.50706 * 117.49697 * 252.51397 * 6 5 3 9 9 O 1.21286 * 119.99809 * 68.61904 * 8 6 5 10 10 N 1.34774 * 119.99782 * 248.62243 * 8 6 5 11 11 C 1.37099 * 120.00222 * 179.97438 * 10 8 6 12 12 H 1.08002 * 119.99643 * 323.02453 * 11 10 8 13 13 C 1.38945 * 120.00193 * 143.02086 * 11 10 8 14 14 N 1.31410 * 120.00458 * 155.52867 * 13 11 10 15 15 Si 1.86809 * 120.00085 * 335.52878 * 13 11 10 16 16 H 1.48499 * 109.46892 * 94.43138 * 15 13 11 17 17 H 1.48494 * 109.47249 * 214.43031 * 15 13 11 18 18 H 1.48503 * 109.46691 * 334.43313 * 15 13 11 19 19 C 1.46507 * 120.00209 * 0.02562 * 10 8 6 20 20 C 1.47197 * 109.47280 * 84.54782 * 19 10 8 21 21 N 6.24887 * 145.70633 * 323.93847 * 2 1 3 22 22 H 1.08990 * 109.46888 * 60.00131 * 1 2 3 23 23 H 1.08993 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 300.00124 * 1 2 3 25 25 H 1.08997 * 109.46577 * 239.99098 * 2 1 3 26 26 H 1.09003 * 109.46680 * 120.00067 * 2 1 3 27 27 H 1.08998 * 117.49833 * 145.02041 * 5 3 2 28 28 H 1.09004 * 117.49436 * 0.02562 * 5 3 2 29 29 H 0.96991 * 120.00532 * 180.02562 * 14 13 11 30 30 H 1.08998 * 109.46884 * 204.55130 * 19 10 8 31 31 H 1.09007 * 109.46606 * 324.54419 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1961 8 6 4.0229 2.8620 0.8913 9 8 3.2158 3.6167 1.3913 10 7 5.3425 3.1001 1.0270 11 6 5.7726 4.1959 1.7299 12 1 5.2259 5.1253 1.6687 13 6 6.9116 4.1106 2.5210 14 7 7.6001 5.1944 2.8007 15 14 7.4645 2.4552 3.1871 16 1 8.4728 1.8647 2.2708 17 1 8.0656 2.6387 4.5325 18 1 6.2944 1.5463 3.2875 19 6 6.3174 2.1888 0.4225 20 6 6.5291 2.5606 -0.9859 21 7 6.6926 2.8462 -2.0725 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.7214 2.9426 -1.5345 28 1 3.0093 1.1857 -2.0159 29 1 8.3955 5.1348 3.3526 30 1 7.2618 2.2571 0.9623 31 1 5.9413 1.1670 0.4761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464722849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = 4.328963 kcal Electronic energy + Delta-G solvation = -14997.025430 eV Core-core repulsion = 12472.152466 eV Total energy + Delta-G solvation = -2524.872964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.08997 -38.42905 -37.60659 -36.38679 -34.19351 -32.79738 -29.42095 -27.75940 -24.80544 -24.24647 -21.42159 -20.56480 -20.09303 -18.40463 -18.02956 -17.35005 -16.12409 -15.82324 -15.33787 -15.22621 -15.10358 -14.65530 -14.39452 -14.01997 -13.78580 -13.34806 -13.31476 -13.02106 -12.93954 -12.70072 -12.24222 -12.05833 -11.85865 -11.80251 -11.15189 -11.09743 -10.84786 -10.46527 -9.98424 -8.52179 -6.19092 1.23876 1.38132 1.46600 1.54627 1.74094 1.77541 2.21542 2.67870 2.79803 2.90575 3.24590 3.68558 3.85153 3.90474 4.05876 4.17891 4.32381 4.43124 4.56394 4.63868 4.79054 4.97602 5.01374 5.20795 5.30129 5.36743 5.47920 5.57201 6.01692 6.42640 6.51663 6.86902 7.16837 7.74099 8.64847 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.008992 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.077963 B = 3113.151378 C = 3422.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.113 4.113 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.195 4.195 7 H 0.158 0.842 8 C 0.495 3.505 9 O -0.604 6.604 10 N -0.469 5.469 11 C -0.349 4.349 12 H 0.040 0.960 13 C 0.014 3.986 14 N -0.904 5.904 15 Si 0.931 3.069 16 H -0.222 1.222 17 H -0.285 1.285 18 H -0.236 1.236 19 C 0.179 3.821 20 C 0.222 3.778 21 N -0.466 5.466 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.283 0.717 30 H 0.116 0.884 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -16.836 -4.118 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.132 4.132 4 H 0.104 0.896 5 C -0.183 4.183 6 C -0.215 4.215 7 H 0.176 0.824 8 C 0.286 3.714 9 O -0.487 6.487 10 N -0.190 5.190 11 C -0.477 4.477 12 H 0.058 0.942 13 C -0.190 4.190 14 N -0.540 5.540 15 Si 0.751 3.249 16 H -0.146 1.146 17 H -0.212 1.212 18 H -0.158 1.158 19 C 0.053 3.947 20 C -0.097 4.097 21 N -0.145 5.145 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.287 -15.899 -5.376 17.596 hybrid contribution 0.423 0.754 1.054 1.363 sum -4.863 -15.145 -4.322 16.484 Atomic orbital electron populations 1.21743 0.94929 1.02375 1.01603 1.21169 0.96446 0.91379 1.03398 1.22468 0.90594 0.99843 1.00286 0.89599 1.23098 1.02076 1.02297 0.90792 1.22485 0.98738 0.98345 1.01974 0.82422 1.20493 0.81932 0.87005 0.81981 1.90534 1.54275 1.51404 1.52458 1.43568 1.04060 1.24550 1.46870 1.18570 1.11754 0.89514 1.27827 0.94208 1.26283 0.95012 1.02552 0.95121 1.69902 1.15953 1.32477 1.35662 0.86100 0.80629 0.79050 0.79159 1.14603 1.21177 1.15836 1.19919 0.96745 0.97017 0.81022 1.30066 0.92052 0.92381 0.95211 1.81031 1.09839 1.09212 1.14432 0.92715 0.90886 0.93632 0.89578 0.90643 0.91363 0.84921 0.90721 0.86624 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.87 71.98 0.71 -1.84 16 2 C -0.09 -1.60 6.21 30.59 0.19 -1.41 16 3 C -0.11 -3.08 5.25 -10.79 -0.06 -3.14 16 4 H 0.09 2.89 7.60 -2.39 -0.02 2.87 16 5 C -0.15 -3.96 9.88 30.59 0.30 -3.66 16 6 C -0.19 -5.92 4.91 -11.54 -0.06 -5.97 16 7 H 0.16 3.39 6.52 -2.39 -0.02 3.37 16 8 C 0.49 22.07 7.35 87.66 0.64 22.72 16 9 O -0.60 -33.18 16.12 -3.05 -0.05 -33.22 16 10 N -0.47 -21.28 2.15 -645.40 -1.39 -22.67 16 11 C -0.35 -19.74 9.35 84.04 0.79 -18.96 16 12 H 0.04 2.71 7.90 -2.91 -0.02 2.69 16 13 C 0.01 0.73 5.23 84.93 0.44 1.17 16 14 N -0.90 -51.83 13.96 21.66 0.30 -51.53 16 15 Si 0.93 35.99 25.23 68.60 1.73 37.72 16 16 H -0.22 -6.96 6.62 99.48 0.66 -6.31 16 17 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 19 C 0.18 5.97 4.33 84.57 0.37 6.33 16 20 C 0.22 8.00 15.58 89.45 1.39 9.39 16 21 N -0.47 -18.26 18.53 20.00 0.37 -17.89 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.09 1.23 7.88 -2.39 -0.02 1.22 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.13 2.68 8.03 -2.39 -0.02 2.66 16 29 H 0.28 14.73 8.31 -92.72 -0.77 13.96 16 30 H 0.12 3.86 3.62 -2.39 -0.01 3.85 16 31 H 0.17 3.58 6.24 -2.38 -0.01 3.56 16 Total: -1.00 -73.93 271.58 6.78 -67.16 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.09 Total: 15.80 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.72 Total: 4.63 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -0.72 Total: -92.08 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.22 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 1.73 Total: 37.72 kcal Total: -73.93 6.78 -67.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464722849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.489 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds