Wall clock time and date at job start Mon Mar 30 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99622 * 2 1 4 4 C 1.39001 * 111.00043 * 123.95640 * 2 1 3 5 5 N 1.32432 * 119.70605 * 296.20306 * 4 2 1 6 6 C 1.31942 * 121.62100 * 179.75351 * 5 4 2 7 7 C 1.38070 * 120.85514 * 0.53286 * 6 5 4 8 8 C 1.38837 * 119.32714 * 359.73742 * 7 6 5 9 9 C 1.38345 * 118.50718 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.44889 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.46805 * 145.68815 * 10 9 8 12 12 O 1.42900 * 109.47258 * 25.69061 * 10 9 8 13 13 C 1.50700 * 109.47529 * 265.68317 * 10 9 8 14 14 H 1.08000 * 119.99695 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99854 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00522 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99935 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46733 * 60.00004 * 17 15 13 19 19 H 1.48491 * 109.47497 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47253 * 300.00585 * 17 15 13 21 21 H 1.09001 * 109.47840 * 56.04717 * 1 2 3 22 22 H 1.09003 * 109.47145 * 296.04091 * 1 2 3 23 23 H 1.09006 * 109.47011 * 176.04565 * 1 2 3 24 24 H 1.09005 * 109.46755 * 58.05590 * 3 2 1 25 25 H 1.08997 * 109.46638 * 178.05867 * 3 2 1 26 26 H 1.08994 * 109.47214 * 298.05764 * 3 2 1 27 27 H 1.08003 * 119.56842 * 180.28899 * 6 5 4 28 28 H 1.07996 * 120.33487 * 179.76416 * 7 6 5 29 29 H 1.07992 * 120.74672 * 180.02562 * 8 7 6 30 30 H 0.96700 * 113.99258 * 299.99449 * 12 10 9 31 31 H 0.96997 * 120.00149 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9671 -0.7248 1.0764 5 7 1.7281 -0.3127 2.3120 6 6 2.1785 -0.9740 3.3611 7 6 2.9297 -2.1220 3.2056 8 6 3.2073 -2.5849 1.9264 9 6 2.7175 -1.8731 0.8459 10 6 2.9920 -2.3364 -0.5615 11 1 2.1344 -2.1058 -1.1937 12 8 3.2190 -3.7473 -0.5628 13 6 4.2125 -1.6307 -1.0938 14 1 4.7372 -0.9182 -0.4746 15 6 4.6592 -1.8946 -2.3712 16 7 4.0199 -2.7619 -3.1254 17 14 6.1725 -1.0203 -3.0308 18 1 7.3407 -1.3355 -2.1699 19 1 6.4421 -1.4759 -4.4181 20 1 5.9374 0.4460 -3.0287 21 1 -0.3635 0.5739 -0.8524 22 1 -0.3633 0.4512 0.9234 23 1 -0.3633 -1.0253 -0.0709 24 1 1.6179 1.9055 0.8721 25 1 3.0844 1.3426 0.0348 26 1 1.6743 1.8839 -0.9068 27 1 1.9600 -0.6105 4.3544 28 1 3.2973 -2.6546 4.0701 29 1 3.7923 -3.4805 1.7782 30 1 3.9691 -4.0254 -0.0195 31 1 4.3340 -2.9473 -4.0242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535686720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:55 Heat of formation + Delta-G solvation = 1.218743 kcal Electronic energy + Delta-G solvation = -15463.766711 eV Core-core repulsion = 12938.758877 eV Total energy + Delta-G solvation = -2525.007833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00619 -36.30689 -35.72938 -32.13987 -31.51958 -30.16195 -27.13600 -26.70201 -24.46152 -23.60094 -21.01221 -20.68055 -17.08856 -16.66724 -16.14450 -15.36398 -14.72174 -14.59436 -14.12852 -13.61687 -13.38010 -12.92822 -12.62713 -12.45990 -11.91348 -11.80809 -11.50173 -11.26064 -11.09680 -10.93430 -10.88486 -10.21726 -9.48640 -9.24915 -9.01733 -8.64227 -8.42623 -7.93715 -7.89991 -5.97114 -4.13818 1.64269 1.90904 3.30929 3.36050 3.38345 4.24315 4.28706 4.45765 4.98529 5.28063 5.36198 5.57432 5.61511 5.76209 5.80033 5.87729 5.94981 6.06982 6.22177 6.28741 6.37489 6.40968 6.68217 6.77236 7.10865 7.36476 7.76738 7.86234 7.93573 8.17326 8.46030 8.85130 9.32141 9.58992 11.06803 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.010809 C = 0.009454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.543309 B = 2589.888262 C = 2961.123621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.474 5.474 3 C 0.040 3.960 4 C 0.282 3.718 5 N -0.517 5.517 6 C 0.075 3.925 7 C -0.177 4.177 8 C -0.083 4.083 9 C -0.084 4.084 10 C 0.269 3.731 11 H 0.086 0.914 12 O -0.563 6.563 13 C -0.547 4.547 14 H 0.051 0.949 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.342 0.658 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 3.370 8.606 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.196 5.196 3 C -0.108 4.108 4 C 0.054 3.946 5 N -0.229 5.229 6 C -0.083 4.083 7 C -0.196 4.196 8 C -0.109 4.109 9 C -0.088 4.088 10 C 0.211 3.789 11 H 0.104 0.896 12 O -0.366 6.366 13 C -0.585 4.585 14 H 0.069 0.931 15 C -0.124 4.124 16 N -0.495 5.495 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.160 0.840 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.187 0.813 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.034 3.835 7.689 9.492 hybrid contribution 1.620 0.243 0.655 1.764 sum -2.414 4.079 8.344 9.596 Atomic orbital electron populations 1.22351 0.86484 1.02231 1.00500 1.59992 1.07927 1.14557 1.37144 1.22262 1.01013 0.87257 1.00241 1.19592 0.95384 0.93028 0.86572 1.67574 1.22134 1.33210 0.99983 1.22199 0.96544 0.92938 0.96615 1.21982 1.01289 0.98531 0.97847 1.21350 0.98175 0.99760 0.91638 1.22185 0.92664 0.93275 1.00674 1.18415 0.97616 0.78358 0.84464 0.89619 1.86661 1.51926 1.25440 1.72546 1.21270 1.11914 1.25793 0.99500 0.93100 1.24972 0.96608 0.94371 0.96476 1.70054 1.38871 1.31870 1.08695 0.86734 0.83401 0.80199 0.78009 1.20295 1.21203 1.20145 0.91131 0.94945 0.91684 0.95189 0.91272 0.91254 0.83984 0.85674 0.84970 0.81344 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.46 60.06 0.57 1.10 16 2 N -0.47 -9.48 4.03 -188.97 -0.76 -10.24 16 3 C 0.04 0.70 9.39 60.07 0.56 1.27 16 4 C 0.28 5.88 5.31 -155.01 -0.82 5.06 16 5 N -0.52 -9.84 9.64 -12.44 -0.12 -9.96 16 6 C 0.08 1.23 11.17 -17.57 -0.20 1.03 16 7 C -0.18 -2.78 10.10 -39.42 -0.40 -3.18 16 8 C -0.08 -1.55 9.41 -39.32 -0.37 -1.92 16 9 C -0.08 -1.84 5.03 -104.27 -0.52 -2.37 16 10 C 0.27 6.85 2.78 -29.04 -0.08 6.77 16 11 H 0.09 2.43 7.62 -51.92 -0.40 2.03 16 12 O -0.56 -14.31 12.41 -35.23 -0.44 -14.75 16 13 C -0.55 -14.86 8.75 -34.44 -0.30 -15.16 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 15 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 16 N -0.86 -25.07 12.84 55.43 0.71 -24.35 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 22 H 0.03 0.52 7.91 -51.93 -0.41 0.11 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 25 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.14 1.82 8.06 -52.48 -0.42 1.39 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.13 2.22 6.53 -52.49 -0.34 1.88 16 30 H 0.34 7.55 7.38 45.56 0.34 7.89 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -31.15 268.71 -6.54 -37.69 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.30 Total: 6.67 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.66 Total: -5.23 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.17 Total: -44.56 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.44 Total: -14.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.15 -6.54 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535686720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.908 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds