Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00011 * 2 1 4 4 C 1.39000 * 111.00203 * 123.95845 * 2 1 3 5 5 N 1.32425 * 119.70551 * 298.29442 * 4 2 1 6 6 C 1.31939 * 121.62735 * 179.97438 * 5 4 2 7 7 C 1.38073 * 120.85028 * 0.02562 * 6 5 4 8 8 C 1.38841 * 119.32905 * 359.72398 * 7 6 5 9 9 C 1.38342 * 118.50112 * 0.51286 * 8 7 6 10 10 C 1.50701 * 120.44535 * 179.78246 * 9 8 7 11 11 H 1.09000 * 109.46895 * 214.31806 * 10 9 8 12 12 O 1.42902 * 109.47459 * 334.31865 * 10 9 8 13 13 C 1.50697 * 109.46944 * 94.31787 * 10 9 8 14 14 H 1.07998 * 120.00127 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99775 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00265 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99769 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46766 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.46831 * 299.99582 * 17 15 13 20 20 H 1.48498 * 109.47038 * 59.99956 * 17 15 13 21 21 H 1.08996 * 109.46641 * 296.04332 * 1 2 3 22 22 H 1.08997 * 109.47389 * 56.04338 * 1 2 3 23 23 H 1.09000 * 109.46819 * 176.04389 * 1 2 3 24 24 H 1.08998 * 109.47042 * 185.24731 * 3 2 1 25 25 H 1.09002 * 109.47102 * 305.24744 * 3 2 1 26 26 H 1.08997 * 109.46971 * 65.24770 * 3 2 1 27 27 H 1.07998 * 119.57978 * 180.02562 * 6 5 4 28 28 H 1.08001 * 120.33563 * 180.02562 * 7 6 5 29 29 H 1.07994 * 120.74933 * 180.27461 * 8 7 6 30 30 H 0.96693 * 113.99934 * 59.99714 * 12 10 9 31 31 H 0.97003 * 119.99551 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9672 -0.7249 1.0763 5 7 1.6934 -0.3362 2.3123 6 6 2.1460 -0.9960 3.3614 7 6 2.9276 -2.1235 3.2055 8 6 3.2334 -2.5674 1.9260 9 6 2.7488 -1.8520 0.8456 10 6 3.0581 -2.2919 -0.5622 11 1 3.1633 -1.4156 -1.2018 12 8 4.2772 -3.0374 -0.5714 13 6 1.9364 -3.1572 -1.0760 14 1 1.0849 -3.3678 -0.4459 15 6 1.9971 -3.6798 -2.3505 16 7 3.0338 -3.4229 -3.1179 17 14 0.6063 -4.7518 -2.9876 18 1 0.9105 -5.1843 -4.3752 19 1 0.4629 -5.9459 -2.1166 20 1 -0.6604 -3.9768 -2.9777 21 1 -0.3632 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0811 1.3439 -0.0940 25 1 1.5720 1.9232 -0.8393 26 1 1.7240 1.8648 0.9332 27 1 1.9021 -0.6498 4.3548 28 1 3.2934 -2.6575 4.0701 29 1 3.8391 -3.4491 1.7775 30 1 4.2559 -3.8329 -0.0221 31 1 3.7555 -2.8653 -2.7874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535686904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -27.881441 kcal Electronic energy + Delta-G solvation = -15511.257462 eV Core-core repulsion = 12984.987750 eV Total energy + Delta-G solvation = -2526.269712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.54856 -38.10753 -37.65777 -34.27572 -33.20402 -31.69488 -28.57445 -28.26454 -25.93008 -25.29759 -22.73427 -22.43822 -19.36589 -18.43770 -17.73498 -17.38277 -16.25617 -15.88007 -15.64129 -15.17575 -15.04618 -14.80933 -14.38537 -14.11988 -14.03584 -13.30836 -13.16663 -12.91535 -12.71902 -12.60876 -12.17911 -11.94528 -11.58180 -10.85159 -10.65153 -10.55355 -10.25670 -9.55964 -9.45805 -8.53272 -6.36839 0.16619 0.38046 1.53758 1.61012 1.80578 2.57848 2.77870 2.84614 3.21565 3.58714 3.97840 4.04774 4.12951 4.22426 4.31209 4.37358 4.48938 4.55430 4.64752 4.75562 4.83239 4.90176 5.09843 5.24228 5.61707 5.63579 5.85885 5.93966 6.17858 6.38136 6.62580 6.96799 7.14831 7.54330 8.82680 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.010888 C = 0.009510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.418567 B = 2571.065739 C = 2943.445456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.506 5.506 3 C 0.036 3.964 4 C 0.270 3.730 5 N -0.527 5.527 6 C 0.082 3.918 7 C -0.161 4.161 8 C -0.089 4.089 9 C -0.120 4.120 10 C 0.263 3.737 11 H 0.041 0.959 12 O -0.591 6.591 13 C -0.620 4.620 14 H 0.035 0.965 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 1.111 2.889 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.274 1.274 21 H 0.040 0.960 22 H 0.088 0.912 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.188 0.812 28 H 0.173 0.827 29 H 0.143 0.857 30 H 0.363 0.637 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 4.151 11.387 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.229 5.229 3 C -0.111 4.111 4 C 0.043 3.957 5 N -0.239 5.239 6 C -0.076 4.076 7 C -0.180 4.180 8 C -0.115 4.115 9 C -0.124 4.124 10 C 0.205 3.795 11 H 0.059 0.941 12 O -0.397 6.397 13 C -0.658 4.658 14 H 0.054 0.946 15 C -0.214 4.214 16 N -0.556 5.556 17 Si 0.933 3.067 18 H -0.210 1.210 19 H -0.196 1.196 20 H -0.200 1.200 21 H 0.059 0.941 22 H 0.106 0.894 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.191 0.809 29 H 0.161 0.839 30 H 0.210 0.790 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.687 4.329 9.356 10.949 hybrid contribution 0.710 0.194 1.973 2.105 sum -2.977 4.523 11.329 12.557 Atomic orbital electron populations 1.22232 0.84805 1.01743 1.01423 1.59952 1.09981 1.15123 1.37833 1.22348 0.99956 0.86971 1.01782 1.19608 0.95434 0.93030 0.87616 1.67648 1.23181 1.33340 0.99758 1.23074 0.94365 0.92531 0.97651 1.22423 0.99547 0.98256 0.97824 1.21603 0.98250 0.99374 0.92252 1.21682 0.96967 0.94781 0.98948 1.18110 0.82767 0.90770 0.87852 0.94149 1.86502 1.39347 1.41040 1.72850 1.22332 1.06259 1.34968 1.02238 0.94628 1.27117 1.02165 0.98339 0.93773 1.70768 1.09205 1.36036 1.39617 0.83033 0.72676 0.75152 0.75854 1.20989 1.19586 1.19958 0.94132 0.89369 0.93400 0.92899 0.89160 0.94059 0.79515 0.80915 0.83938 0.78989 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.45 127.69 1.21 2.80 16 2 N -0.51 -20.45 4.04 -751.80 -3.03 -23.48 16 3 C 0.04 1.21 9.48 127.69 1.21 2.42 16 4 C 0.27 11.22 5.33 133.05 0.71 11.92 16 5 N -0.53 -19.01 9.51 -193.27 -1.84 -20.85 16 6 C 0.08 2.36 11.18 84.64 0.95 3.30 16 7 C -0.16 -4.44 10.10 22.38 0.23 -4.22 16 8 C -0.09 -3.16 9.41 22.44 0.21 -2.95 16 9 C -0.12 -5.28 5.03 -19.63 -0.10 -5.38 16 10 C 0.26 13.69 2.38 29.10 0.07 13.75 16 11 H 0.04 2.39 7.49 -2.39 -0.02 2.37 16 12 O -0.59 -30.14 11.70 -148.98 -1.74 -31.89 16 13 C -0.62 -34.68 8.75 25.60 0.22 -34.45 16 14 H 0.04 2.01 7.74 -2.91 -0.02 1.99 16 15 C -0.01 -0.69 5.40 84.66 0.46 -0.23 16 16 N -0.92 -56.88 13.53 21.45 0.29 -56.59 16 17 Si 1.11 50.26 29.90 68.60 2.05 52.31 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H 0.04 1.33 7.87 -2.39 -0.02 1.31 16 22 H 0.09 2.70 8.10 -2.39 -0.02 2.68 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.09 2.56 8.10 -2.39 -0.02 2.54 16 26 H 0.04 1.28 7.85 -2.39 -0.02 1.27 16 27 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 28 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.14 4.59 6.53 -2.91 -0.02 4.58 16 30 H 0.36 16.04 7.38 -74.06 -0.55 15.50 16 31 H 0.27 17.08 6.47 -92.71 -0.60 16.48 16 Total: -1.00 -69.80 266.43 1.64 -68.16 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.75 Total: 25.36 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.16 Total: -13.03 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.58 Total: -100.92 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.74 Total: -31.89 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -69.80 1.64 -68.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535686904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.280 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds