Wall clock time and date at job start Mon Mar 30 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99703 * 2 1 4 4 C 1.38995 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.39148 * 119.70699 * 5.01699 * 4 2 1 6 6 C 1.38296 * 119.09449 * 179.70556 * 5 4 2 7 7 C 1.38879 * 118.50600 * 0.53673 * 6 5 4 8 8 C 1.50703 * 120.33363 * 179.73857 * 7 6 5 9 9 H 1.09000 * 109.47408 * 24.72171 * 8 7 6 10 10 O 1.42896 * 109.47646 * 144.72332 * 8 7 6 11 11 C 1.50708 * 109.46925 * 264.72164 * 8 7 6 12 12 H 1.07991 * 119.99789 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00008 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38013 * 119.33172 * 359.45813 * 7 6 5 20 20 N 1.31974 * 120.85908 * 0.27966 * 19 7 6 21 21 H 1.09003 * 109.46650 * 269.99472 * 1 2 3 22 22 H 1.08991 * 109.47320 * 29.99556 * 1 2 3 23 23 H 1.08999 * 109.46924 * 150.00240 * 1 2 3 24 24 H 1.09003 * 109.46984 * 240.00678 * 3 2 1 25 25 H 1.08999 * 109.47496 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47050 * 120.00482 * 3 2 1 27 27 H 1.08002 * 120.44897 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.74415 * 180.29650 * 6 5 4 29 29 H 0.96704 * 114.00255 * 59.99269 * 10 8 7 30 30 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 31 31 H 1.08007 * 119.57324 * 180.29765 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4622 -2.4029 -0.1068 6 6 2.1669 -3.5928 -0.1122 7 6 3.5503 -3.5444 0.0006 8 6 4.3585 -4.8164 0.0051 9 1 3.8032 -5.6016 -0.5079 10 8 5.6000 -4.5944 -0.6667 11 6 4.6252 -5.2369 1.4275 12 1 4.2469 -4.6429 2.2462 13 6 5.3513 -6.3807 1.6836 14 7 5.5836 -6.7480 2.9248 15 14 6.0050 -7.4087 0.2675 16 1 4.9963 -8.4317 -0.1086 17 1 7.2615 -8.0821 0.6833 18 1 6.2768 -6.5297 -0.8982 19 6 4.1778 -2.3194 0.1025 20 7 3.4802 -1.1991 0.0996 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8899 -0.5137 23 1 -0.3633 -0.8900 -0.5138 24 1 2.8240 1.3265 -0.8901 25 1 1.4892 2.0972 0.0005 26 1 2.8242 1.3265 0.8900 27 1 0.3853 -2.4040 -0.1883 28 1 1.6526 -4.5387 -0.1982 29 1 6.1478 -3.9068 -0.2638 30 1 6.0947 -7.5525 3.1049 31 1 5.2539 -2.2770 0.1855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535729163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:00 Heat of formation + Delta-G solvation = 3.550401 kcal Electronic energy + Delta-G solvation = -14864.508283 eV Core-core repulsion = 12339.601558 eV Total energy + Delta-G solvation = -2524.906725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83982 -36.89137 -35.38069 -32.31770 -31.99639 -30.20972 -28.10864 -27.22504 -24.78828 -22.94317 -21.88619 -20.24059 -17.51147 -17.08689 -16.18928 -15.37967 -15.08596 -14.78181 -14.37368 -14.07714 -13.25715 -12.99398 -12.80909 -12.66776 -12.51698 -12.14272 -12.06489 -11.86692 -11.61352 -11.04570 -10.66743 -10.26140 -9.48214 -9.19933 -9.11941 -8.81999 -8.63340 -8.37319 -7.04232 -6.13489 -4.25453 1.83212 2.06703 3.17359 3.38188 3.48088 3.73721 4.47492 4.52294 4.86927 5.07558 5.17557 5.27360 5.35786 5.51008 5.54933 5.69874 5.74239 5.77183 5.85229 5.95213 6.00551 6.23229 6.51354 6.80173 7.07592 7.17006 7.39908 7.52492 7.70985 8.28254 8.64876 8.80769 8.98418 9.49485 10.96740 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.054796 B = 0.006719 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.861444 B = 4166.164845 C = 4230.482130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.629 5.629 3 C 0.112 3.888 4 C 0.375 3.625 5 C -0.238 4.238 6 C -0.037 4.037 7 C -0.164 4.164 8 C 0.236 3.764 9 H 0.064 0.936 10 O -0.577 6.577 11 C -0.557 4.557 12 H 0.073 0.927 13 C 0.084 3.916 14 N -0.890 5.890 15 Si 0.869 3.131 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.217 1.217 19 C 0.145 3.855 20 N -0.540 5.540 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.356 0.644 30 H 0.266 0.734 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 11.477 -6.934 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.347 5.347 3 C -0.031 4.031 4 C 0.142 3.858 5 C -0.262 4.262 6 C -0.063 4.063 7 C -0.169 4.169 8 C 0.178 3.822 9 H 0.082 0.918 10 O -0.384 6.384 11 C -0.594 4.594 12 H 0.091 0.909 13 C -0.120 4.120 14 N -0.527 5.527 15 Si 0.695 3.305 16 H -0.213 1.213 17 H -0.221 1.221 18 H -0.139 1.139 19 C -0.011 4.011 20 N -0.256 5.256 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.203 0.797 30 H 0.075 0.925 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.163 11.844 -7.145 16.061 hybrid contribution -0.037 -1.021 0.024 1.022 sum -8.199 10.823 -7.121 15.332 Atomic orbital electron populations 1.21613 0.79161 1.02438 1.01048 1.45975 1.04522 1.03018 1.81145 1.21369 0.96075 0.83875 1.01786 1.18193 0.88681 0.85402 0.93480 1.21311 1.00233 0.92032 1.12640 1.21171 0.93727 0.97446 0.93972 1.21602 0.95027 0.98465 1.01778 1.18683 0.81412 0.88746 0.93402 0.91831 1.86721 1.32636 1.60358 1.58673 1.21424 1.36577 1.10482 0.90888 0.90904 1.25009 0.94377 0.96811 0.95840 1.69952 1.38891 1.24546 1.19310 0.87053 0.78122 0.79914 0.85368 1.21307 1.22107 1.13922 1.22059 0.99344 0.86380 0.93363 1.67097 1.06107 1.32095 1.20319 0.93564 0.91654 0.91299 0.93088 0.91974 0.92765 0.85811 0.85291 0.79653 0.92497 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 10.25 59.85 0.61 1.63 16 2 N -0.63 -8.83 3.39 -189.67 -0.64 -9.47 16 3 C 0.11 1.34 10.19 59.85 0.61 1.95 16 4 C 0.38 6.56 7.37 -155.02 -1.14 5.42 16 5 C -0.24 -3.98 9.27 -39.22 -0.36 -4.35 16 6 C -0.04 -0.69 9.83 -39.32 -0.39 -1.08 16 7 C -0.16 -3.43 4.96 -104.47 -0.52 -3.95 16 8 C 0.24 5.50 2.57 -29.03 -0.07 5.43 16 9 H 0.06 1.50 7.49 -51.93 -0.39 1.11 16 10 O -0.58 -12.96 9.94 -35.23 -0.35 -13.31 16 11 C -0.56 -15.36 9.33 -34.44 -0.32 -15.68 16 12 H 0.07 2.23 7.98 -52.49 -0.42 1.81 16 13 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 14 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 15 Si 0.87 21.44 26.99 -169.99 -4.59 16.85 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.22 -5.21 5.31 56.52 0.30 -4.91 16 19 C 0.14 2.87 10.48 -17.57 -0.18 2.69 16 20 N -0.54 -10.36 9.57 -12.44 -0.12 -10.47 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 23 H 0.07 0.65 5.97 -51.93 -0.31 0.34 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.12 1.68 6.03 -52.49 -0.32 1.36 16 28 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 29 H 0.36 6.99 7.40 45.56 0.34 7.33 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.15 2.73 6.61 -52.48 -0.35 2.38 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -32.71 261.08 -6.04 -38.75 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.19 Total: 5.59 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.86 Total: -5.64 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.01 Total: -46.18 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.35 Total: -13.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.71 -6.04 -38.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535729163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.301 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds