Wall clock time and date at job start Mon Mar 30 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99703 * 2 1 4 4 C 1.38995 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.39148 * 119.70699 * 5.01699 * 4 2 1 6 6 C 1.38296 * 119.09449 * 179.70556 * 5 4 2 7 7 C 1.38879 * 118.50600 * 0.53673 * 6 5 4 8 8 C 1.50703 * 120.33363 * 179.73857 * 7 6 5 9 9 H 1.09000 * 109.47408 * 24.72171 * 8 7 6 10 10 O 1.42896 * 109.47646 * 144.72332 * 8 7 6 11 11 C 1.50708 * 109.46925 * 264.72164 * 8 7 6 12 12 H 1.07991 * 119.99789 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00008 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38013 * 119.33172 * 359.45813 * 7 6 5 20 20 N 1.31974 * 120.85908 * 0.27966 * 19 7 6 21 21 H 1.09003 * 109.46650 * 269.99472 * 1 2 3 22 22 H 1.08991 * 109.47320 * 29.99556 * 1 2 3 23 23 H 1.08999 * 109.46924 * 150.00240 * 1 2 3 24 24 H 1.09003 * 109.46984 * 240.00678 * 3 2 1 25 25 H 1.08999 * 109.47496 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47050 * 120.00482 * 3 2 1 27 27 H 1.08002 * 120.44897 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.74415 * 180.29650 * 6 5 4 29 29 H 0.96704 * 114.00255 * 59.99269 * 10 8 7 30 30 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 31 31 H 1.08007 * 119.57324 * 180.29765 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4622 -2.4029 -0.1068 6 6 2.1669 -3.5928 -0.1122 7 6 3.5503 -3.5444 0.0006 8 6 4.3585 -4.8164 0.0051 9 1 3.8032 -5.6016 -0.5079 10 8 5.6000 -4.5944 -0.6667 11 6 4.6252 -5.2369 1.4275 12 1 4.2469 -4.6429 2.2462 13 6 5.3513 -6.3807 1.6836 14 7 5.5836 -6.7480 2.9248 15 14 6.0050 -7.4087 0.2675 16 1 4.9963 -8.4317 -0.1086 17 1 7.2615 -8.0821 0.6833 18 1 6.2768 -6.5297 -0.8982 19 6 4.1778 -2.3194 0.1025 20 7 3.4802 -1.1991 0.0996 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8899 -0.5137 23 1 -0.3633 -0.8900 -0.5138 24 1 2.8240 1.3265 -0.8901 25 1 1.4892 2.0972 0.0005 26 1 2.8242 1.3265 0.8900 27 1 0.3853 -2.4040 -0.1883 28 1 1.6526 -4.5387 -0.1982 29 1 6.1478 -3.9068 -0.2638 30 1 6.0947 -7.5525 3.1049 31 1 5.2539 -2.2770 0.1855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535729163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:00 Heat of formation + Delta-G solvation = -19.990420 kcal Electronic energy + Delta-G solvation = -14865.529090 eV Core-core repulsion = 12339.601558 eV Total energy + Delta-G solvation = -2525.927532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22643 -38.38364 -36.81495 -34.43638 -33.46601 -31.66226 -29.10599 -28.95722 -26.18907 -24.45891 -23.37996 -21.73610 -19.46764 -18.42768 -17.56329 -17.04724 -16.79709 -16.14764 -15.69959 -15.31039 -15.00788 -14.64863 -14.31337 -14.14159 -13.77460 -13.47288 -13.36866 -13.03145 -12.98719 -12.70462 -12.59225 -12.00940 -11.35531 -10.86422 -10.63062 -10.54434 -10.37034 -10.13211 -8.36805 -8.28899 -6.48957 0.41976 0.61684 1.42883 1.48432 1.78059 2.10801 2.45717 3.00757 3.06651 3.64956 4.02567 4.06429 4.22455 4.27441 4.35620 4.50117 4.53429 4.57895 4.77672 4.83584 4.93814 4.98412 5.11821 5.24858 5.45185 5.64469 5.74115 6.10143 6.15565 6.45627 6.63322 7.13529 7.26929 7.32573 8.80917 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.054796 B = 0.006719 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.861444 B = 4166.164845 C = 4230.482130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.628 5.628 3 C 0.109 3.891 4 C 0.368 3.632 5 C -0.233 4.233 6 C -0.044 4.044 7 C -0.197 4.197 8 C 0.247 3.753 9 H 0.065 0.935 10 O -0.579 6.579 11 C -0.554 4.554 12 H 0.028 0.972 13 C 0.029 3.971 14 N -0.939 5.939 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.297 1.297 18 H -0.205 1.205 19 C 0.136 3.864 20 N -0.558 5.558 21 H 0.053 0.947 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.101 0.899 26 H 0.038 0.962 27 H 0.160 0.840 28 H 0.143 0.857 29 H 0.368 0.632 30 H 0.268 0.732 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 12.546 -8.627 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.345 5.345 3 C -0.034 4.034 4 C 0.133 3.867 5 C -0.257 4.257 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.189 3.811 9 H 0.082 0.918 10 O -0.387 6.387 11 C -0.591 4.591 12 H 0.047 0.953 13 C -0.170 4.170 14 N -0.579 5.579 15 Si 0.763 3.237 16 H -0.207 1.207 17 H -0.223 1.223 18 H -0.127 1.127 19 C -0.020 4.020 20 N -0.275 5.275 21 H 0.072 0.928 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.177 0.823 28 H 0.161 0.839 29 H 0.217 0.783 30 H 0.076 0.924 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.680 12.960 -8.845 18.436 hybrid contribution 0.305 -1.157 0.605 1.341 sum -9.374 11.803 -8.241 17.178 Atomic orbital electron populations 1.21922 0.76584 1.04381 1.02127 1.46388 1.06193 1.02371 1.79505 1.21496 0.96923 0.84252 1.00719 1.18670 0.88486 0.87236 0.92294 1.21622 1.01894 0.90953 1.11264 1.21424 0.93088 0.99003 0.93515 1.21409 0.96019 0.97556 1.05192 1.18379 0.82017 0.90222 0.90482 0.91758 1.86632 1.32596 1.61062 1.58368 1.21646 1.35584 1.09616 0.92261 0.95328 1.25891 0.94787 0.98190 0.98175 1.70085 1.40605 1.25552 1.21612 0.85972 0.77221 0.78208 0.82267 1.20728 1.22340 1.12654 1.22141 0.99854 0.86508 0.93448 1.67142 1.07271 1.31641 1.21495 0.92796 0.88578 0.90586 0.93758 0.88097 0.94274 0.82307 0.83946 0.78297 0.92361 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.25 127.77 1.31 2.78 16 2 N -0.63 -15.84 3.39 -753.97 -2.56 -18.40 16 3 C 0.11 2.34 10.19 127.77 1.30 3.64 16 4 C 0.37 12.22 7.37 133.07 0.98 13.20 16 5 C -0.23 -7.29 9.27 22.50 0.21 -7.08 16 6 C -0.04 -1.61 9.83 22.44 0.22 -1.39 16 7 C -0.20 -8.20 4.96 -19.76 -0.10 -8.30 16 8 C 0.25 11.51 2.57 29.11 0.07 11.59 16 9 H 0.06 2.97 7.49 -2.39 -0.02 2.95 16 10 O -0.58 -25.41 9.94 -148.98 -1.48 -26.89 16 11 C -0.55 -31.27 9.33 25.60 0.24 -31.03 16 12 H 0.03 1.82 7.98 -2.92 -0.02 1.80 16 13 C 0.03 1.69 5.47 84.65 0.46 2.15 16 14 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 15 Si 0.94 44.59 26.99 68.60 1.85 46.44 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.20 -9.24 5.31 99.48 0.53 -8.71 16 19 C 0.14 5.42 10.48 84.62 0.89 6.31 16 20 N -0.56 -21.10 9.57 -193.26 -1.85 -22.95 16 21 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.10 0.99 7.92 -2.39 -0.02 0.97 16 23 H 0.08 1.12 5.97 -2.39 -0.01 1.11 16 24 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.37 7.79 -2.39 -0.02 1.35 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.16 3.72 6.03 -2.91 -0.02 3.71 16 28 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.37 14.29 7.40 -74.05 -0.55 13.74 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 31 H 0.16 5.70 6.61 -2.91 -0.02 5.69 16 Total: -1.00 -71.30 261.08 2.26 -69.03 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.41 Total: 19.10 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 5.59 Total: -8.14 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -4.11 Total: -99.54 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.48 Total: -26.89 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -71.30 2.26 -69.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535729163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.043 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds