Wall clock time and date at job start Mon Mar 30 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47273 * 300.02886 * 5 4 3 7 7 C 1.53010 * 109.47110 * 60.02609 * 5 4 3 8 8 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 9 9 C 1.50700 * 126.12519 * 180.23853 * 8 4 3 10 10 C 1.35306 * 107.74429 * 0.39166 * 8 4 3 11 11 C 1.50706 * 126.04096 * 179.87280 * 10 8 4 12 12 C 1.50702 * 109.46975 * 269.71660 * 11 10 8 13 13 H 1.07998 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99982 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99617 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47477 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47233 * 120.00050 * 16 14 12 19 19 H 1.48506 * 109.46908 * 239.99801 * 16 14 12 20 20 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 21 21 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 22 22 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 23 23 H 1.09001 * 109.47685 * 180.02562 * 5 4 3 24 24 H 1.08992 * 109.46898 * 59.99538 * 6 5 4 25 25 H 1.09000 * 109.46609 * 180.02562 * 6 5 4 26 26 H 1.08995 * 109.46595 * 299.99614 * 6 5 4 27 27 H 1.08996 * 109.46598 * 59.99997 * 7 5 4 28 28 H 1.08994 * 109.47026 * 179.97438 * 7 5 4 29 29 H 1.09001 * 109.46555 * 300.00335 * 7 5 4 30 30 H 1.09005 * 109.47205 * 270.20276 * 9 8 4 31 31 H 1.08997 * 109.47171 * 30.20230 * 9 8 4 32 32 H 1.09004 * 109.46953 * 150.20351 * 9 8 4 33 33 H 1.08994 * 109.46790 * 29.71060 * 11 10 8 34 34 H 1.08997 * 109.47305 * 149.71501 * 11 10 8 35 35 H 0.96998 * 119.99644 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 4.7738 2.3853 -1.2485 7 6 4.7750 2.3827 1.2500 8 6 3.6142 -0.7154 0.0045 9 6 4.8350 -1.5989 0.0109 10 6 2.3272 -1.1330 -0.0006 11 6 1.8598 -2.5658 -0.0004 12 6 1.7038 -3.0435 -1.4212 13 1 1.9208 -2.3762 -2.2421 14 6 1.2839 -4.3324 -1.6729 15 7 1.0201 -5.1451 -0.6731 16 14 1.0898 -4.9243 -3.4340 17 1 1.4461 -3.8258 -4.3675 18 1 1.9871 -6.0841 -3.6681 19 1 -0.3188 -5.3334 -3.6662 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3634 -0.8897 -0.5143 23 1 5.6908 0.8872 -0.0014 24 1 3.8730 2.9988 -1.2474 25 1 5.6529 3.0297 -1.2484 26 1 4.7844 1.7570 -2.1391 27 1 4.7865 1.7524 2.1392 28 1 5.6541 3.0271 1.2505 29 1 3.8741 2.9962 1.2510 30 1 5.1341 -1.8129 -1.0153 31 1 5.6487 -1.0905 0.5280 32 1 4.6051 -2.5325 0.5245 33 1 2.5934 -3.1871 0.5132 34 1 0.9012 -2.6352 0.5136 35 1 0.7250 -6.0520 -0.8503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026546963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:19 Heat of formation + Delta-G solvation = 30.709689 kcal Electronic energy + Delta-G solvation = -15381.967947 eV Core-core repulsion = 12994.072031 eV Total energy + Delta-G solvation = -2387.895916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14225 -36.87619 -35.24407 -33.63121 -32.57446 -30.00867 -28.19813 -28.18304 -27.34055 -24.66418 -22.56162 -20.28734 -19.66674 -18.40595 -17.43610 -16.50582 -16.19124 -15.38611 -14.91361 -14.43788 -14.27920 -14.24459 -14.03906 -13.87729 -13.27220 -13.23451 -13.11368 -13.02093 -12.85964 -12.79768 -12.54186 -12.38465 -12.19070 -12.03280 -11.71700 -11.44402 -11.07691 -10.51016 -9.76642 -8.91770 -8.08908 -6.21927 1.05979 1.40372 1.41576 1.54020 1.74896 2.01587 2.47526 3.18730 3.56667 3.92777 4.00785 4.03506 4.15389 4.30185 4.58429 4.68001 4.70761 4.74108 4.78848 4.81711 4.83305 4.91159 4.99437 5.10025 5.19415 5.23761 5.28043 5.43073 5.50401 5.83439 5.86396 6.00358 6.33514 6.44290 6.90056 6.98745 7.45628 8.97980 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.007656 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.058580 B = 3656.340594 C = 3859.664160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.052 3.948 3 N -0.320 5.320 4 N -0.370 5.370 5 C 0.144 3.856 6 C -0.152 4.152 7 C -0.151 4.151 8 C 0.060 3.940 9 C -0.076 4.076 10 C -0.227 4.227 11 C 0.105 3.895 12 C -0.512 4.512 13 H 0.042 0.958 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.278 1.278 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.120 0.880 24 H 0.051 0.949 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.001 0.999 34 H -0.002 1.002 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 12.469 1.327 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.144 5.144 4 N -0.155 5.155 5 C 0.044 3.956 6 C -0.210 4.210 7 C -0.208 4.208 8 C -0.066 4.066 9 C -0.134 4.134 10 C -0.238 4.238 11 C 0.067 3.933 12 C -0.551 4.551 13 H 0.061 0.939 14 C -0.190 4.190 15 N -0.571 5.571 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.203 1.203 20 H 0.099 0.901 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.138 0.862 24 H 0.070 0.930 25 H 0.125 0.875 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.102 13.681 1.361 16.488 hybrid contribution -0.523 -1.599 -0.765 1.848 sum 8.579 12.082 0.595 14.830 Atomic orbital electron populations 1.20085 0.86244 1.02836 1.02894 1.22485 0.97779 0.90500 1.00493 1.76935 0.87447 1.22585 1.27414 1.48769 1.05109 1.03652 1.57933 1.21656 0.84004 0.92001 0.97978 1.22073 1.03749 0.99565 0.95568 1.22074 1.03748 0.99582 0.95431 1.21123 0.97447 0.85051 1.02955 1.20360 0.92104 0.97572 1.03397 1.20393 0.92321 0.97352 1.13743 1.17260 0.94219 0.86444 0.95369 1.21376 1.44085 0.96838 0.92765 0.93942 1.25795 0.95259 0.96922 1.01004 1.70078 1.47336 1.07108 1.32587 0.85536 0.77963 0.78183 0.80190 1.19567 1.20103 1.20323 0.90120 0.90270 0.91601 0.86234 0.93030 0.87502 0.93554 0.93039 0.87597 0.93015 0.90381 0.88740 0.91034 0.98039 0.98415 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 10.12 71.24 0.72 -1.64 16 2 C 0.05 2.29 7.22 43.10 0.31 2.60 16 3 N -0.32 -13.05 12.43 -47.38 -0.59 -13.64 16 4 N -0.37 -13.24 3.28 -314.28 -1.03 -14.27 16 5 C 0.14 3.50 3.64 45.00 0.16 3.67 16 6 C -0.15 -3.31 9.45 71.98 0.68 -2.63 16 7 C -0.15 -3.10 9.45 71.99 0.68 -2.42 16 8 C 0.06 2.43 6.93 41.40 0.29 2.72 16 9 C -0.08 -2.46 9.73 71.24 0.69 -1.77 16 10 C -0.23 -10.82 5.29 -20.14 -0.11 -10.92 16 11 C 0.11 5.77 4.92 29.10 0.14 5.91 16 12 C -0.51 -29.75 9.09 25.60 0.23 -29.52 16 13 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 16 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 22 H 0.07 2.75 7.92 -2.39 -0.02 2.73 16 23 H 0.12 2.32 6.68 -2.39 -0.02 2.30 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.09 2.22 7.11 -2.39 -0.02 2.20 16 32 H 0.07 2.55 7.14 -2.39 -0.02 2.53 16 33 H 0.00 0.08 7.14 -2.39 -0.02 0.06 16 34 H 0.00 -0.14 7.92 -2.39 -0.02 -0.16 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -69.90 294.38 6.01 -63.89 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.05 Total: 6.11 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.27 Total: -33.09 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.33 Total: -83.82 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.90 6.01 -63.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026546963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.598 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds