Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33705 * 118.24983 * 2 1 4 4 C 1.40073 * 118.25180 * 359.37970 * 3 2 1 5 5 H 1.07995 * 119.99835 * 240.27953 * 4 3 2 6 6 C 1.40308 * 119.99617 * 60.55986 * 4 3 2 7 7 N 1.30692 * 119.99510 * 194.80170 * 6 4 3 8 8 Si 1.86800 * 120.00149 * 14.80683 * 6 4 3 9 9 H 1.48497 * 109.47196 * 88.65980 * 8 6 4 10 10 H 1.48500 * 109.46843 * 208.66129 * 8 6 4 11 11 H 1.48501 * 109.46968 * 328.65565 * 8 6 4 12 12 C 1.50130 * 123.49813 * 179.66110 * 3 2 1 13 13 C 1.53007 * 109.36335 * 137.29746 * 12 3 2 14 14 C 1.52991 * 109.36396 * 256.90450 * 12 3 2 15 15 C 1.52822 * 110.20955 * 16.91449 * 12 3 2 16 16 H 1.09000 * 109.55514 * 70.05549 * 15 12 3 17 17 C 1.50705 * 109.68210 * 190.41680 * 15 12 3 18 18 O 1.20761 * 119.99819 * 239.32154 * 17 15 12 19 19 C 1.53329 * 108.73997 * 310.27542 * 15 12 3 20 20 C 1.50127 * 118.25053 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47272 * 84.67748 * 1 2 3 22 22 H 1.09002 * 109.47373 * 204.68075 * 1 2 3 23 23 H 1.09004 * 109.47256 * 324.67811 * 1 2 3 24 24 H 0.97003 * 119.99525 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.46451 * 60.00140 * 13 12 3 26 26 H 1.08994 * 109.46883 * 179.97438 * 13 12 3 27 27 H 1.08998 * 109.47138 * 300.00240 * 13 12 3 28 28 H 1.09004 * 109.47244 * 59.99802 * 14 12 3 29 29 H 1.09006 * 109.47263 * 179.97438 * 14 12 3 30 30 H 1.08997 * 109.47434 * 299.99714 * 14 12 3 31 31 H 1.07992 * 120.00067 * 59.31753 * 17 15 12 32 32 H 1.08999 * 109.61654 * 308.71309 * 19 15 12 33 33 H 1.09005 * 109.61950 * 188.17101 * 19 15 12 34 34 H 1.08995 * 109.36183 * 317.56054 * 20 2 1 35 35 H 1.08999 * 109.36205 * 77.16182 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1398 1.1778 0.0000 4 6 1.3668 2.3458 -0.0134 5 1 1.4632 3.0478 -0.8283 6 6 0.4716 2.6065 1.0351 7 7 -0.4482 3.5245 0.8958 8 14 0.5944 1.6417 2.6299 9 1 1.5325 2.3291 3.5533 10 1 -0.7471 1.5555 3.2608 11 1 1.0954 0.2735 2.3433 12 6 3.6348 1.3151 0.0074 13 6 4.0481 2.4152 -0.9725 14 6 4.1027 1.6911 1.4146 15 6 4.2882 -0.0041 -0.4028 16 1 4.1067 -0.1874 -1.4618 17 6 5.7720 0.0636 -0.1481 18 8 6.5487 -0.0855 -1.0607 19 6 3.6745 -1.1371 0.4283 20 6 2.2176 -1.3225 -0.0006 21 1 -0.3634 0.0953 -1.0232 22 1 -0.3634 -0.9338 0.4291 23 1 -0.3634 0.8385 0.5942 24 1 -1.0669 3.7050 1.6208 25 1 3.5940 3.3592 -0.6714 26 1 5.1333 2.5166 -0.9682 27 1 3.7112 2.1535 -1.9756 28 1 3.8049 0.9123 2.1168 29 1 5.1882 1.7909 1.4221 30 1 3.6486 2.6376 1.7078 31 1 6.1407 0.2457 0.8505 32 1 3.7145 -0.8780 1.4863 33 1 4.2275 -2.0601 0.2536 34 1 1.7201 -2.0003 0.6930 35 1 2.1873 -1.7485 -1.0034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036420288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -34.777426 kcal Electronic energy + Delta-G solvation = -16312.072590 eV Core-core repulsion = 13889.044189 eV Total energy + Delta-G solvation = -2423.028401 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82131 -37.83444 -33.98306 -33.07940 -31.18882 -26.97228 -26.84255 -26.65261 -24.03610 -22.30755 -20.65164 -18.98386 -17.88554 -16.14376 -15.35243 -15.09868 -14.54264 -14.29267 -13.81475 -13.25250 -13.06123 -12.81450 -12.57269 -12.27725 -11.85121 -11.72548 -11.66711 -11.17133 -10.95717 -10.78918 -10.72687 -10.48208 -10.13907 -9.95081 -9.88873 -9.76451 -9.24719 -9.02996 -8.51410 -6.98738 -6.39939 -4.16247 2.25313 3.16010 3.28426 3.37847 3.59403 4.25999 4.61317 5.04504 5.17181 5.33531 5.39845 5.74171 5.82116 5.96035 6.06356 6.13822 6.16768 6.20637 6.37927 6.46269 6.53847 6.59489 6.61129 6.70672 6.76905 6.87661 6.96519 7.04360 7.08374 7.34212 7.50903 7.65062 7.89415 8.44895 8.76871 9.02924 9.24510 10.63603 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.012180 C = 0.011018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.491329 B = 2298.323376 C = 2540.679831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.255 4.255 3 C 0.055 3.945 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.097 3.903 7 N -0.855 5.855 8 Si 0.862 3.138 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.232 1.232 12 C -0.015 4.015 13 C -0.128 4.128 14 C -0.141 4.141 15 C -0.145 4.145 16 H 0.090 0.910 17 C 0.354 3.646 18 O -0.476 6.476 19 C -0.103 4.103 20 C -0.053 4.053 21 H 0.041 0.959 22 H 0.021 0.979 23 H 0.066 0.934 24 H 0.272 0.728 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 -6.077 2.335 9.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.257 4.257 3 C 0.054 3.946 4 C -0.536 4.536 5 H 0.101 0.899 6 C -0.113 4.113 7 N -0.485 5.485 8 Si 0.687 3.313 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.154 1.154 12 C -0.015 4.015 13 C -0.185 4.185 14 C -0.198 4.198 15 C -0.164 4.164 16 H 0.108 0.892 17 C 0.211 3.789 18 O -0.348 6.348 19 C -0.141 4.141 20 C -0.090 4.090 21 H 0.060 0.940 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.596 -6.016 1.909 9.129 hybrid contribution -0.250 -0.239 0.987 1.046 sum 6.346 -6.255 2.896 9.369 Atomic orbital electron populations 1.20634 0.93962 0.99013 1.00428 1.21131 0.94447 0.92362 1.17764 1.17749 0.89705 0.93453 0.93716 1.18669 1.19974 1.06562 1.08439 0.89940 1.25627 0.92655 0.93868 0.99130 1.69634 1.14695 1.31291 1.32906 0.87091 0.77786 0.83874 0.82505 1.20734 1.21566 1.15404 1.19479 0.96043 0.91262 0.94750 1.21761 0.98135 0.99834 0.98787 1.21973 0.98937 1.02534 0.96386 1.22198 0.93420 0.98378 1.02429 0.89204 1.26233 0.91293 0.68471 0.92913 1.90336 1.60126 1.35598 1.48741 1.21492 0.96980 0.95957 0.99670 1.20020 0.93005 0.96631 0.99307 0.94046 0.95969 0.91520 0.91816 0.90956 0.94970 0.93174 0.92903 0.93796 0.91376 0.89622 0.91391 0.92863 0.93421 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 8.30 36.00 0.30 -1.56 16 2 C -0.26 -5.51 4.15 -101.22 -0.42 -5.93 16 3 C 0.06 1.23 3.10 -105.80 -0.33 0.91 16 4 C -0.50 -12.95 7.33 -38.12 -0.28 -13.23 16 5 H 0.08 2.33 7.44 -52.49 -0.39 1.94 16 6 C 0.10 2.55 3.92 -17.26 -0.07 2.48 16 7 N -0.85 -23.80 13.92 55.57 0.77 -23.02 16 8 Si 0.86 20.05 24.80 -169.99 -4.22 15.83 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.23 -5.18 5.58 56.52 0.32 -4.86 16 12 C -0.01 -0.28 0.43 -156.03 -0.07 -0.35 16 13 C -0.13 -2.39 7.73 37.16 0.29 -2.10 16 14 C -0.14 -2.45 7.21 37.15 0.27 -2.18 16 15 C -0.14 -2.43 1.85 -91.69 -0.17 -2.60 16 16 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 17 C 0.35 5.41 8.66 36.01 0.31 5.72 16 18 O -0.48 -8.62 17.90 6.00 0.11 -8.52 16 19 C -0.10 -1.64 5.22 -26.56 -0.14 -1.78 16 20 C -0.05 -0.94 5.78 -28.16 -0.16 -1.11 16 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 23 H 0.07 1.62 3.11 -51.93 -0.16 1.46 16 24 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 25 H 0.07 1.44 7.09 -51.93 -0.37 1.07 16 26 H 0.03 0.53 7.55 -51.93 -0.39 0.14 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 29 H 0.04 0.62 6.32 -51.93 -0.33 0.29 16 30 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 31 H 0.09 1.07 6.80 -52.49 -0.36 0.71 16 32 H 0.07 1.05 6.40 -51.93 -0.33 0.72 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -27.78 264.46 -5.07 -32.86 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.26 Total: 0.60 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.47 Total: -21.73 kcal Atomic # 7 Polarization: -23.80 SS G_CDS: 0.77 Total: -23.02 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.22 Total: 15.83 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.78 -5.07 -32.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036420288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.920 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds