Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47059 * 2 1 4 4 C 1.50703 * 109.47272 * 240.00120 * 2 1 3 5 5 H 1.08002 * 120.00104 * 240.00020 * 4 2 1 6 6 C 1.37877 * 120.00187 * 59.99353 * 4 2 1 7 7 N 1.31513 * 119.99594 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00354 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47388 * 89.99847 * 8 6 4 10 10 H 1.48503 * 109.47324 * 210.00465 * 8 6 4 11 11 H 1.48508 * 109.46812 * 330.00298 * 8 6 4 12 12 N 1.46497 * 109.47411 * 119.99790 * 2 1 3 13 13 C 1.46497 * 119.99988 * 59.99980 * 12 2 1 14 14 C 1.38705 * 120.00100 * 239.99781 * 12 2 1 15 15 N 1.32425 * 119.13272 * 179.97438 * 14 12 2 16 16 C 1.32296 * 120.81472 * 179.97438 * 15 14 12 17 17 C 1.39165 * 119.10949 * 0.28444 * 16 15 14 18 18 N 1.40086 * 120.79566 * 179.71838 * 17 16 15 19 19 C 1.39180 * 118.41773 * 359.43608 * 17 16 15 20 20 N 1.32295 * 119.10482 * 0.55675 * 19 17 16 21 21 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47325 * 299.99994 * 1 2 3 23 23 H 1.08995 * 109.47479 * 60.00301 * 1 2 3 24 24 H 0.97001 * 120.00032 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47597 * 269.99836 * 13 12 2 26 26 H 1.09007 * 109.47229 * 30.00259 * 13 12 2 27 27 H 1.09000 * 109.47482 * 149.99802 * 13 12 2 28 28 H 1.08002 * 120.44155 * 180.02562 * 16 15 14 29 29 H 0.97005 * 119.99659 * 359.97438 * 18 17 16 30 30 H 0.96999 * 120.00367 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.44903 * 180.26636 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0183 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.8158 -0.0164 2.1091 15 7 3.2474 -0.6571 3.1847 16 6 4.0101 -0.0466 4.0767 17 6 4.3523 1.2872 3.8753 18 7 5.1532 1.9697 4.8001 19 6 3.8849 1.9253 2.7301 20 7 3.1263 1.2506 1.8818 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 0.7093 1.1617 -3.4844 25 1 0.7376 -2.1444 1.9995 26 1 1.5295 -2.5969 0.4708 27 1 2.4629 -2.5818 1.9863 28 1 4.3591 -0.5751 4.9516 29 1 5.4759 1.5126 5.5925 30 1 5.3851 2.8992 4.6480 31 1 4.1341 2.9585 2.5390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = 67.004749 kcal Electronic energy + Delta-G solvation = -15050.021899 eV Core-core repulsion = 12560.159512 eV Total energy + Delta-G solvation = -2489.862387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25757 -36.56535 -34.42111 -33.03751 -32.54683 -29.42024 -28.09939 -25.43655 -25.10217 -23.91076 -22.14779 -19.87929 -17.65742 -16.87620 -16.23357 -16.14760 -15.12414 -14.62581 -14.54120 -14.07212 -13.29139 -12.94003 -12.86318 -12.33669 -11.52124 -11.24744 -11.12719 -10.95105 -10.79025 -10.74053 -10.49280 -10.21151 -10.11480 -10.07364 -9.12120 -8.47538 -8.23615 -8.20179 -6.38071 -5.97558 -4.07391 1.74192 2.01289 3.30651 3.37183 3.40844 3.75409 4.16467 4.44135 4.62978 4.88770 5.04759 5.30295 5.41882 5.49764 6.14416 6.18106 6.34853 6.60610 6.62744 6.87402 6.97597 7.18190 7.43468 7.54045 7.68918 7.78408 7.91120 7.98369 8.17091 8.31423 8.65253 8.91035 9.18345 9.58463 11.04364 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.007485 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.303232 B = 3739.992876 C = 3904.665840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.270 3.730 3 H 0.070 0.930 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.566 5.566 13 C 0.111 3.889 14 C 0.531 3.469 15 N -0.551 5.551 16 C 0.121 3.879 17 C 0.016 3.984 18 N -0.880 5.880 19 C 0.129 3.871 20 N -0.523 5.523 21 H 0.028 0.972 22 H 0.009 0.991 23 H 0.093 0.907 24 H 0.262 0.738 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.152 0.848 29 H 0.392 0.608 30 H 0.394 0.606 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 0.683 11.627 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.169 3.831 3 H 0.088 0.912 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.281 5.281 13 C -0.033 4.033 14 C 0.175 3.825 15 N -0.274 5.274 16 C -0.051 4.051 17 C -0.092 4.092 18 N -0.425 5.425 19 C -0.045 4.045 20 N -0.244 5.244 21 H 0.047 0.953 22 H 0.028 0.972 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.169 0.831 29 H 0.220 0.780 30 H 0.221 0.779 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.335 0.129 10.549 11.405 hybrid contribution 1.100 0.202 0.041 1.120 sum 5.435 0.331 10.590 11.908 Atomic orbital electron populations 1.22112 0.98506 0.99349 1.00550 1.18973 0.90496 0.94476 0.79119 0.91191 1.21399 1.31434 1.12901 0.90383 0.92369 1.24867 0.95057 0.95020 0.98812 1.69883 1.36646 1.22666 1.23589 0.86517 0.79192 0.79318 0.82488 1.20648 1.21161 1.20029 1.46796 1.49172 1.10666 1.21423 1.21351 0.98831 0.81985 1.01159 1.19327 0.90317 0.85673 0.87165 1.67790 1.16242 1.38876 1.04458 1.22253 0.95158 0.90065 0.97658 1.19149 1.00539 0.94886 0.94638 1.41885 1.60138 1.14534 1.25983 1.22452 0.93866 0.99467 0.88736 1.67919 1.16895 1.08234 1.31355 0.95278 0.97184 0.88866 0.92805 0.94796 0.90830 0.92133 0.83116 0.78033 0.77898 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.97 37.15 0.33 -3.32 16 2 C 0.27 7.08 2.66 -69.09 -0.18 6.90 16 3 H 0.07 2.03 6.76 -51.93 -0.35 1.68 16 4 C -0.52 -14.51 7.99 -34.44 -0.28 -14.79 16 5 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.57 -13.32 2.86 -177.55 -0.51 -13.83 16 13 C 0.11 2.25 9.44 59.85 0.56 2.81 16 14 C 0.53 11.92 8.18 -322.55 -2.64 9.28 16 15 N -0.55 -10.83 9.11 -13.74 -0.13 -10.96 16 16 C 0.12 1.90 11.19 -17.01 -0.19 1.71 16 17 C 0.02 0.24 6.82 -83.39 -0.57 -0.33 16 18 N -0.88 -8.57 9.12 32.59 0.30 -8.27 16 19 C 0.13 2.20 11.19 -17.00 -0.19 2.01 16 20 N -0.52 -11.46 8.84 -13.74 -0.12 -11.58 16 21 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 22 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.51 7.02 -51.93 -0.36 1.15 16 27 H 0.06 1.15 7.34 -51.93 -0.38 0.77 16 28 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.39 2.96 8.87 -40.82 -0.36 2.59 16 30 H 0.39 3.11 8.87 -40.82 -0.36 2.75 16 31 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -31.40 264.48 -7.85 -39.25 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.74 Total: 3.73 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -3.24 Total: 5.97 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: 0.17 Total: -69.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.40 -7.85 -39.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.256 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds