Wall clock time and date at job start Mon Mar 30 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47059 * 2 1 4 4 C 1.50703 * 109.47272 * 240.00120 * 2 1 3 5 5 H 1.08002 * 120.00104 * 240.00020 * 4 2 1 6 6 C 1.37877 * 120.00187 * 59.99353 * 4 2 1 7 7 N 1.31513 * 119.99594 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00354 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47388 * 89.99847 * 8 6 4 10 10 H 1.48503 * 109.47324 * 210.00465 * 8 6 4 11 11 H 1.48508 * 109.46812 * 330.00298 * 8 6 4 12 12 N 1.46497 * 109.47411 * 119.99790 * 2 1 3 13 13 C 1.46497 * 119.99988 * 59.99980 * 12 2 1 14 14 C 1.38705 * 120.00100 * 239.99781 * 12 2 1 15 15 N 1.32425 * 119.13272 * 179.97438 * 14 12 2 16 16 C 1.32296 * 120.81472 * 179.97438 * 15 14 12 17 17 C 1.39165 * 119.10949 * 0.28444 * 16 15 14 18 18 N 1.40086 * 120.79566 * 179.71838 * 17 16 15 19 19 C 1.39180 * 118.41773 * 359.43608 * 17 16 15 20 20 N 1.32295 * 119.10482 * 0.55675 * 19 17 16 21 21 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47325 * 299.99994 * 1 2 3 23 23 H 1.08995 * 109.47479 * 60.00301 * 1 2 3 24 24 H 0.97001 * 120.00032 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47597 * 269.99836 * 13 12 2 26 26 H 1.09007 * 109.47229 * 30.00259 * 13 12 2 27 27 H 1.09000 * 109.47482 * 149.99802 * 13 12 2 28 28 H 1.08002 * 120.44155 * 180.02562 * 16 15 14 29 29 H 0.97005 * 119.99659 * 359.97438 * 18 17 16 30 30 H 0.96999 * 120.00367 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.44903 * 180.26636 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0183 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.8158 -0.0164 2.1091 15 7 3.2474 -0.6571 3.1847 16 6 4.0101 -0.0466 4.0767 17 6 4.3523 1.2872 3.8753 18 7 5.1532 1.9697 4.8001 19 6 3.8849 1.9253 2.7301 20 7 3.1263 1.2506 1.8818 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 0.7093 1.1617 -3.4844 25 1 0.7376 -2.1444 1.9995 26 1 1.5295 -2.5969 0.4708 27 1 2.4629 -2.5818 1.9863 28 1 4.3591 -0.5751 4.9516 29 1 5.4759 1.5126 5.5925 30 1 5.3851 2.8992 4.6480 31 1 4.1341 2.9585 2.5390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063086736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:26 Heat of formation + Delta-G solvation = 46.665850 kcal Electronic energy + Delta-G solvation = -15050.903860 eV Core-core repulsion = 12560.159512 eV Total energy + Delta-G solvation = -2490.744348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66594 -38.21289 -35.79891 -34.56713 -34.31102 -31.25584 -29.50326 -27.26601 -26.90909 -25.27637 -23.71337 -21.63909 -19.02423 -18.42758 -18.17773 -17.37513 -16.69370 -16.09957 -16.06651 -15.57892 -15.03781 -14.56134 -14.16129 -14.14409 -13.47843 -13.04245 -12.79046 -12.68730 -12.52423 -12.32228 -12.22532 -12.09780 -11.93387 -11.67055 -11.10142 -10.49632 -9.76457 -9.65177 -8.14863 -7.69149 -6.24100 0.41008 0.63707 1.42524 1.43042 1.53397 2.21286 2.47351 3.13270 3.16654 3.20624 3.59091 3.87823 3.93822 4.26118 4.62403 4.78406 4.81375 4.90166 4.97446 5.06107 5.17510 5.33465 5.57675 5.72469 5.88909 6.18690 6.23476 6.38368 6.61855 6.83870 7.02304 7.15810 7.42970 7.69384 8.94561 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.007485 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.303232 B = 3739.992876 C = 3904.665840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.280 3.720 3 H 0.034 0.966 4 C -0.537 4.537 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.588 5.588 13 C 0.119 3.881 14 C 0.499 3.501 15 N -0.557 5.557 16 C 0.109 3.891 17 C 0.050 3.950 18 N -0.855 5.855 19 C 0.103 3.897 20 N -0.565 5.565 21 H 0.035 0.965 22 H 0.015 0.985 23 H 0.071 0.929 24 H 0.264 0.736 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.409 0.591 30 H 0.407 0.593 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 0.511 13.179 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.178 3.822 3 H 0.052 0.948 4 C -0.576 4.576 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.306 5.306 13 C -0.024 4.024 14 C 0.142 3.858 15 N -0.279 5.279 16 C -0.063 4.063 17 C -0.061 4.061 18 N -0.401 5.401 19 C -0.069 4.069 20 N -0.286 5.286 21 H 0.054 0.946 22 H 0.034 0.966 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.211 0.789 29 H 0.240 0.760 30 H 0.237 0.763 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.839 -0.001 12.195 13.520 hybrid contribution 0.812 0.384 -0.205 0.922 sum 6.651 0.383 11.989 13.716 Atomic orbital electron populations 1.21909 0.98101 0.99408 0.99631 1.18522 0.90690 0.92810 0.80179 0.94781 1.21615 1.31546 1.12812 0.91596 0.93207 1.25635 0.95176 0.95684 1.01578 1.70005 1.37385 1.23733 1.24287 0.85520 0.78616 0.78364 0.78854 1.19550 1.20686 1.20089 1.46558 1.50982 1.11528 1.21501 1.21319 0.99576 0.80787 1.00761 1.19401 0.91876 0.86240 0.88257 1.67770 1.16659 1.39298 1.04203 1.22992 0.94374 0.90859 0.98047 1.19147 0.98554 0.94483 0.93873 1.41871 1.57935 1.15115 1.25172 1.22928 0.94035 1.00602 0.89339 1.67831 1.18539 1.08746 1.33508 0.94580 0.96597 0.91070 0.92649 0.93854 0.91890 0.91182 0.78883 0.76024 0.76276 0.80358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 8.97 71.98 0.65 -6.11 16 2 C 0.28 15.23 2.66 44.24 0.12 15.34 16 3 H 0.03 2.08 6.76 -2.39 -0.02 2.07 16 4 C -0.54 -30.59 7.99 25.60 0.20 -30.39 16 5 H 0.05 2.85 7.33 -2.91 -0.02 2.83 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -53.23 11.32 21.45 0.24 -52.98 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 N -0.59 -28.34 2.86 -715.65 -2.05 -30.38 16 13 C 0.12 4.87 9.44 127.77 1.21 6.08 16 14 C 0.50 22.58 8.18 261.40 2.14 24.72 16 15 N -0.56 -21.29 9.11 -197.38 -1.80 -23.09 16 16 C 0.11 3.12 11.19 84.85 0.95 4.07 16 17 C 0.05 1.31 6.82 38.27 0.26 1.57 16 18 N -0.86 -12.87 9.12 -50.79 -0.46 -13.33 16 19 C 0.10 3.40 11.19 84.85 0.95 4.34 16 20 N -0.56 -25.10 8.84 -197.38 -1.74 -26.84 16 21 H 0.04 1.73 7.67 -2.38 -0.02 1.71 16 22 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.64 7.02 -2.38 -0.02 2.62 16 27 H 0.07 2.66 7.34 -2.39 -0.02 2.64 16 28 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.41 4.07 8.87 -92.70 -0.82 3.25 16 30 H 0.41 4.63 8.87 -92.71 -0.82 3.81 16 31 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -69.73 264.48 2.65 -67.07 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.48 Total: 12.05 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.92 Total: 21.12 kcal Atomic # 7 Polarization: -140.82 SS G_CDS: -5.81 Total: -146.63 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.73 2.65 -67.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.740 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds