Wall clock time and date at job start Mon Mar 30 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47456 * 299.99962 * 3 2 1 6 6 H 1.48504 * 109.47190 * 60.00340 * 3 2 1 7 7 C 1.37879 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.53105 * 109.54128 * 300.34588 * 9 7 2 11 11 C 1.52899 * 109.78206 * 299.12162 * 10 9 7 12 12 C 1.53060 * 109.22178 * 299.72587 * 11 10 9 13 13 C 1.52920 * 109.49505 * 60.42551 * 12 11 10 14 14 C 1.52931 * 109.48919 * 179.97438 * 9 7 2 15 15 H 1.09003 * 109.56283 * 182.27008 * 14 9 7 16 16 C 1.53387 * 109.52073 * 302.47013 * 14 9 7 17 17 C 1.51167 * 108.92051 * 306.04192 * 16 14 9 18 18 O 1.20756 * 120.94565 * 231.59732 * 17 16 14 19 19 C 1.51001 * 118.31068 * 51.02469 * 17 16 14 20 20 C 1.53135 * 109.49112 * 59.48351 * 9 7 2 21 21 H 0.96999 * 120.00358 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.42478 * 59.21731 * 10 9 7 23 23 H 1.09004 * 109.41687 * 179.02719 * 10 9 7 24 24 H 1.09002 * 109.51410 * 59.64480 * 11 10 9 25 25 H 1.09004 * 109.51454 * 179.80329 * 11 10 9 26 26 H 1.09006 * 109.51264 * 180.51285 * 12 11 10 27 27 H 1.09004 * 109.51544 * 300.66696 * 12 11 10 28 28 H 1.09003 * 109.70863 * 179.97438 * 13 12 11 29 29 H 1.08999 * 109.14346 * 60.15057 * 13 12 11 30 30 H 1.09002 * 109.58161 * 65.90877 * 16 14 9 31 31 H 1.09001 * 109.58473 * 186.17692 * 16 14 9 32 32 H 1.08998 * 109.79579 * 188.79506 * 19 17 16 33 33 H 1.09004 * 109.43709 * 68.30773 * 19 17 16 34 34 H 1.09001 * 109.44592 * 176.94020 * 20 9 7 35 35 H 1.09002 * 109.44628 * 296.87496 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 0.3632 -2.5791 1.2431 11 6 1.2296 -2.5184 2.5014 12 6 2.2032 -3.6994 2.5004 13 6 3.1017 -3.6190 1.2657 14 6 2.2444 -3.6619 -0.0027 15 1 1.7013 -4.6061 -0.0443 16 6 3.1675 -3.5464 -1.2223 17 6 2.3204 -3.4414 -2.4700 18 8 2.5112 -4.1707 -3.4133 19 6 1.2190 -2.4090 -2.5029 20 6 0.3612 -2.5744 -1.2457 21 1 -0.4850 0.8400 0.0004 22 1 -0.3360 -1.7429 1.2439 23 1 -0.1938 -3.5160 1.2314 24 1 1.7908 -1.5840 2.5123 25 1 0.5931 -2.5720 3.3847 26 1 2.8173 -3.6658 3.4004 27 1 1.6422 -4.6337 2.4762 28 1 3.7970 -4.4585 1.2617 29 1 3.6629 -2.6849 1.2922 30 1 3.7892 -2.6561 -1.1269 31 1 3.8023 -4.4302 -1.2852 32 1 0.6026 -2.5550 -3.3900 33 1 1.6574 -1.4111 -2.5198 34 1 -0.1420 -3.5409 -1.2741 35 1 -0.3830 -1.7788 -1.2082 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:38 Heat of formation + Delta-G solvation = -80.248406 kcal Electronic energy + Delta-G solvation = -16546.472465 eV Core-core repulsion = 14121.472295 eV Total energy + Delta-G solvation = -2425.000171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21052 -39.24404 -35.23696 -34.17435 -32.41454 -30.17841 -28.52267 -26.87574 -24.12454 -22.49165 -22.13654 -20.45068 -19.76431 -17.21330 -16.81818 -16.34861 -16.18177 -15.67389 -15.53188 -14.87631 -14.65466 -14.38558 -13.85672 -13.41331 -13.05158 -12.87011 -12.75256 -12.43859 -12.39691 -12.20214 -12.10204 -11.97327 -11.67986 -11.49389 -11.22326 -10.77028 -10.42967 -10.35612 -10.13337 -9.94119 -7.84970 -5.95172 1.09856 1.45222 1.53758 1.57705 2.54694 3.38931 3.45703 4.02834 4.15250 4.19422 4.47073 4.48536 4.50705 4.71953 4.75666 4.85049 4.96008 5.00308 5.06917 5.10962 5.16943 5.23256 5.31959 5.35937 5.43080 5.53654 5.65788 5.75501 5.81931 5.90492 5.94115 6.16316 6.38945 6.61093 6.69317 7.08776 7.68965 9.13377 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.015694 C = 0.011621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.096124 B = 1783.727652 C = 2408.908867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.482 4.482 8 H 0.058 0.942 9 C 0.071 3.929 10 C -0.102 4.102 11 C -0.101 4.101 12 C -0.107 4.107 13 C -0.100 4.100 14 C -0.063 4.063 15 H 0.049 0.951 16 C -0.149 4.149 17 C 0.376 3.624 18 O -0.517 6.517 19 C -0.148 4.148 20 C -0.096 4.096 21 H 0.253 0.747 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.023 0.977 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -4.430 2.850 6.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.750 3.250 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.071 3.929 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.137 4.137 14 C -0.082 4.082 15 H 0.068 0.932 16 C -0.186 4.186 17 C 0.257 3.743 18 O -0.396 6.396 19 C -0.185 4.185 20 C -0.134 4.134 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.042 0.958 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.567 -4.673 2.370 6.339 hybrid contribution 0.039 1.379 -0.113 1.385 sum 3.606 -3.294 2.258 5.380 Atomic orbital electron populations 1.69892 1.06410 1.25850 1.52200 1.25292 0.95102 1.00371 0.95915 0.86083 0.79755 0.82518 0.76657 1.19349 1.21987 1.22040 1.21229 0.92586 0.90236 1.47945 0.92372 1.18203 0.91436 0.92387 0.90918 1.21443 0.98443 0.98645 0.95495 1.21308 0.97504 0.98438 0.96619 1.21434 0.97552 0.97831 0.97641 1.21447 0.97328 1.01454 0.93477 1.21124 0.95889 0.98129 0.93039 0.93245 1.22241 0.98732 1.04031 0.93639 1.25234 0.82728 0.79721 0.86598 1.90285 1.68138 1.41824 1.39315 1.22001 0.96970 0.99807 0.99742 1.21504 0.98856 0.99174 0.93861 0.93700 0.91845 0.96245 0.93252 0.93997 0.91591 0.92606 0.91625 0.92205 0.87768 0.89897 0.91782 0.88712 0.95794 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.48 9.32 21.45 0.20 -45.28 16 2 C 0.03 1.52 5.14 84.65 0.44 1.95 16 3 Si 0.92 39.77 29.54 68.60 2.03 41.79 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.48 -21.63 4.25 25.60 0.11 -21.52 16 8 H 0.06 2.60 5.68 -2.91 -0.02 2.58 16 9 C 0.07 2.93 0.25 -52.87 -0.01 2.92 16 10 C -0.10 -4.28 4.45 30.60 0.14 -4.15 16 11 C -0.10 -3.75 5.73 30.58 0.18 -3.58 16 12 C -0.11 -3.30 5.92 30.59 0.18 -3.12 16 13 C -0.10 -3.15 4.93 30.62 0.15 -3.00 16 14 C -0.06 -2.25 1.84 -10.64 -0.02 -2.27 16 15 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 16 C -0.15 -5.16 5.00 30.13 0.15 -5.01 16 17 C 0.38 14.72 6.72 29.35 0.20 14.92 16 18 O -0.52 -22.26 17.89 -1.44 -0.03 -22.28 16 19 C -0.15 -5.94 5.79 29.97 0.17 -5.77 16 20 C -0.10 -4.09 4.45 30.67 0.14 -3.95 16 21 H 0.25 12.62 8.31 -92.71 -0.77 11.85 16 22 H 0.06 3.06 6.03 -2.39 -0.01 3.04 16 23 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.05 2.03 7.26 -2.39 -0.02 2.01 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.03 6.81 -2.39 -0.02 2.01 16 30 H 0.10 3.60 6.71 -2.39 -0.02 3.58 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.09 4.01 7.34 -2.38 -0.02 3.99 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 3.75 6.12 -2.39 -0.01 3.74 16 Total: -1.00 -50.79 260.07 5.08 -45.71 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.06 Total: 12.63 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 1.81 Total: -32.58 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.20 Total: -45.28 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.03 Total: -22.28 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Total: -50.79 5.08 -45.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.536 kcal (2) G-P(sol) polarization free energy of solvation -50.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds