Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34842 * 126.29337 * 2 1 4 4 N 1.36338 * 108.22111 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.63779 * 179.97438 * 4 3 2 6 6 C 1.36340 * 108.72714 * 359.97438 * 4 3 2 7 7 C 1.50703 * 125.89232 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.46900 * 336.18719 * 7 6 4 9 9 N 1.46896 * 109.47185 * 96.18853 * 7 6 4 10 10 C 1.50697 * 109.47063 * 216.19009 * 7 6 4 11 11 H 1.08001 * 119.99545 * 244.82343 * 10 7 6 12 12 C 1.37883 * 120.00307 * 65.10006 * 10 7 6 13 13 N 1.31510 * 119.99982 * 176.39972 * 12 10 7 14 14 Si 1.86797 * 119.99716 * 356.40051 * 12 10 7 15 15 H 1.48499 * 109.47392 * 84.20122 * 14 12 10 16 16 H 1.48503 * 109.46727 * 204.19748 * 14 12 10 17 17 H 1.48500 * 109.47311 * 324.19738 * 14 12 10 18 18 C 1.34845 * 108.22019 * 0.24469 * 6 4 3 19 19 C 1.50699 * 126.29715 * 179.75866 * 18 6 4 20 20 H 1.08995 * 109.46878 * 89.97479 * 1 2 3 21 21 H 1.09002 * 109.46799 * 209.97329 * 1 2 3 22 22 H 1.08991 * 109.47163 * 329.97469 * 1 2 3 23 23 H 1.08010 * 125.89121 * 359.97438 * 3 2 1 24 24 H 1.09000 * 109.46902 * 262.06788 * 5 4 3 25 25 H 1.09002 * 109.47248 * 22.06373 * 5 4 3 26 26 H 1.08998 * 109.47565 * 142.06289 * 5 4 3 27 27 H 1.09002 * 109.47192 * 318.27219 * 8 7 6 28 28 H 1.09002 * 109.46992 * 78.27256 * 8 7 6 29 29 H 1.08999 * 109.46792 * 198.27533 * 8 7 6 30 30 H 1.00897 * 111.00400 * 59.99956 * 9 7 6 31 31 H 1.00900 * 111.00063 * 183.96241 * 9 7 6 32 32 H 0.96999 * 120.00283 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47101 * 85.52121 * 19 18 6 34 34 H 1.08997 * 109.47608 * 205.52445 * 19 18 6 35 35 H 1.09007 * 109.46590 * 325.52701 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3052 1.0868 0.0000 4 7 3.6014 0.6639 -0.0006 5 6 4.7822 1.5310 -0.0013 6 6 3.6169 -0.6994 -0.0004 7 6 4.8478 -1.5689 -0.0014 8 6 6.0253 -0.7853 -0.5851 9 7 5.1629 -1.9732 1.3753 10 6 4.5957 -2.7954 -0.8399 11 1 4.5859 -3.7720 -0.3788 12 6 4.3833 -2.6714 -2.1966 13 7 4.2337 -3.7461 -2.9397 14 14 4.3078 -0.9769 -2.9790 15 1 5.6847 -0.5083 -3.2788 16 1 3.5239 -1.0476 -4.2382 17 1 3.6549 -0.0276 -2.0421 18 6 2.3410 -1.1357 -0.0051 19 6 1.8898 -2.5735 -0.0118 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3633 -0.8903 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.9748 2.1151 -0.0004 24 1 5.1585 1.6315 -1.0194 25 1 4.5116 2.5138 0.3847 26 1 5.5551 1.0929 0.6301 27 1 5.6892 -0.2167 -1.4522 28 1 6.4160 -0.1016 0.1686 29 1 6.8094 -1.4794 -0.8875 30 1 4.4002 -2.4927 1.7832 31 1 6.0207 -2.5035 1.4091 32 1 4.0847 -3.6589 -3.8942 33 1 1.8551 -2.9482 1.0112 34 1 0.8973 -2.6409 -0.4572 35 1 2.5909 -3.1715 -0.5942 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084352280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = 48.057115 kcal Electronic energy + Delta-G solvation = -16533.237658 eV Core-core repulsion = 14146.093984 eV Total energy + Delta-G solvation = -2387.143675 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.28789 -37.45428 -35.07698 -33.90303 -31.37090 -30.38424 -29.42310 -27.15120 -26.77017 -24.81811 -22.47915 -19.88473 -19.60418 -18.44506 -17.54475 -16.91589 -16.11254 -15.86116 -15.21246 -14.72063 -14.60854 -14.14348 -14.08732 -13.68996 -13.44574 -13.34715 -13.20635 -13.16462 -12.60654 -12.54211 -12.35939 -12.16708 -12.08066 -11.48005 -11.34246 -11.21242 -10.55054 -9.38141 -8.81661 -8.38099 -8.28791 -6.28212 1.23643 1.37670 1.49846 1.66560 2.29694 2.35916 2.41556 3.11277 4.01718 4.12729 4.23245 4.36497 4.46207 4.57147 4.62888 4.68881 4.77832 4.79227 4.96188 5.00631 5.06399 5.09635 5.16007 5.31340 5.31965 5.50424 5.62813 5.78457 5.99641 6.18952 6.40066 6.53988 6.64377 6.77442 6.87041 6.97853 7.37713 8.83846 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.016291 C = 0.014408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.448344 B = 1718.352893 C = 1942.885538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.202 4.202 3 C -0.033 4.033 4 N -0.450 5.450 5 C 0.060 3.940 6 C 0.052 3.948 7 C 0.271 3.729 8 C -0.155 4.155 9 N -0.826 5.826 10 C -0.510 4.510 11 H 0.044 0.956 12 C 0.044 3.956 13 N -0.939 5.939 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.327 1.327 17 H -0.198 1.198 18 C -0.179 4.179 19 C -0.084 4.084 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.183 0.817 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.333 0.667 31 H 0.338 0.662 32 H 0.260 0.740 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 11.511 6.412 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.209 4.209 3 C -0.162 4.162 4 N -0.126 5.126 5 C -0.080 4.080 6 C -0.061 4.061 7 C 0.177 3.823 8 C -0.213 4.213 9 N -0.353 5.353 10 C -0.549 4.549 11 H 0.062 0.938 12 C -0.156 4.156 13 N -0.579 5.579 14 Si 0.729 3.271 15 H -0.206 1.206 16 H -0.257 1.257 17 H -0.120 1.120 18 C -0.186 4.186 19 C -0.141 4.141 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.200 0.800 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.110 12.488 6.427 14.088 hybrid contribution -0.166 -0.950 -1.454 1.745 sum -1.275 11.538 4.973 12.628 Atomic orbital electron populations 1.20004 0.89478 1.01977 1.00809 1.19758 0.96342 0.92534 1.12249 1.21809 0.82369 0.99359 1.12625 1.44015 1.06481 1.05561 1.56548 1.22503 0.87460 0.95134 1.02952 1.20503 0.96514 0.82091 1.06953 1.17130 0.87735 0.90319 0.87096 1.22576 0.98781 1.00120 0.99776 1.59159 1.07981 1.49589 1.18621 1.21538 1.47863 0.92822 0.92668 0.93829 1.25436 0.93719 0.98569 0.97865 1.70028 1.51115 1.30504 1.06243 0.86828 0.77475 0.85006 0.77804 1.20625 1.25654 1.12007 1.19247 0.92487 0.95080 1.11772 1.20365 0.99959 0.93513 1.00313 0.93092 0.92809 0.90667 0.80008 0.92025 0.87583 0.88740 0.94063 0.89981 0.93505 0.85566 0.85004 0.93125 0.93695 0.94415 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.05 71.24 0.72 -1.27 16 2 C -0.20 -7.63 6.14 -19.99 -0.12 -7.75 16 3 C -0.03 -1.10 11.09 83.21 0.92 -0.18 16 4 N -0.45 -16.22 2.01 -533.25 -1.07 -17.30 16 5 C 0.06 1.65 9.14 127.77 1.17 2.81 16 6 C 0.05 2.18 3.03 41.08 0.12 2.31 16 7 C 0.27 11.72 0.86 2.04 0.00 11.72 16 8 C -0.16 -6.13 6.24 71.98 0.45 -5.68 16 9 N -0.83 -31.62 8.85 -157.51 -1.39 -33.01 16 10 C -0.51 -26.87 5.58 25.60 0.14 -26.73 16 11 H 0.04 2.55 8.00 -2.91 -0.02 2.53 16 12 C 0.04 2.45 4.84 84.66 0.41 2.86 16 13 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 14 Si 0.90 44.38 23.25 68.60 1.59 45.98 16 15 H -0.28 -13.21 6.73 99.48 0.67 -12.54 16 16 H -0.33 -17.26 7.11 99.48 0.71 -16.55 16 17 H -0.20 -9.02 3.74 99.48 0.37 -8.65 16 18 C -0.18 -7.86 5.55 -19.99 -0.11 -7.97 16 19 C -0.08 -3.80 9.65 71.24 0.69 -3.11 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.05 1.62 7.92 -2.39 -0.02 1.61 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 24 H 0.06 1.69 7.15 -2.39 -0.02 1.67 16 25 H 0.11 2.10 8.11 -2.39 -0.02 2.08 16 26 H 0.09 2.54 5.51 -2.39 -0.01 2.53 16 27 H 0.04 1.67 2.24 -2.39 -0.01 1.66 16 28 H 0.08 2.68 5.62 -2.39 -0.01 2.67 16 29 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 30 H 0.33 12.99 8.98 -89.70 -0.81 12.18 16 31 H 0.34 12.10 8.98 -89.69 -0.81 11.29 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.58 7.81 -2.39 -0.02 1.57 16 35 H 0.08 4.05 4.49 -2.38 -0.01 4.04 16 Total: -1.00 -65.21 261.40 2.94 -62.26 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.87 Total: 32.40 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 4.39 Total: -32.98 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -2.17 Total: -107.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.59 Total: 45.98 kcal Total: -65.21 2.94 -62.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084352280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.319 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds