Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36343 * 125.63153 * 90.02303 * 12 11 10 14 14 C 1.34856 * 108.21378 * 180.02562 * 13 12 11 15 15 C 1.40890 * 107.41842 * 0.02562 * 14 13 12 16 16 C 1.50700 * 126.29136 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47174 * 90.02245 * 16 15 14 18 18 N 1.46902 * 109.47298 * 180.02562 * 17 16 15 19 19 C 1.34850 * 107.41639 * 359.73547 * 15 14 13 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 26 26 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 27 27 H 1.07993 * 125.89755 * 359.97438 * 13 12 11 28 28 H 1.08004 * 126.28890 * 180.02562 * 14 13 12 29 29 H 1.08991 * 109.47308 * 210.02110 * 16 15 14 30 30 H 1.09004 * 109.46862 * 330.02754 * 16 15 14 31 31 H 1.09004 * 109.47182 * 300.00070 * 17 16 15 32 32 H 1.09002 * 109.47386 * 59.99999 * 17 16 15 33 33 H 1.00899 * 111.00175 * 180.02562 * 18 17 16 34 34 H 1.00902 * 110.99864 * 303.95952 * 18 17 16 35 35 H 1.08000 * 125.89321 * 180.25904 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 2.9483 -6.7042 1.1107 14 6 3.7849 -7.6819 0.7074 15 6 3.7860 -7.6815 -0.7015 16 6 4.5759 -8.6046 -1.5932 17 6 3.7463 -9.8539 -1.8965 18 7 4.5164 -10.7541 -2.7652 19 6 2.9455 -6.7074 -1.1055 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8541 -5.0447 0.8922 26 1 0.8534 -5.0451 -0.8877 27 1 2.7260 -6.4438 2.1350 28 1 4.3503 -8.3437 1.3469 29 1 4.8156 -8.0926 -2.5250 30 1 5.4984 -8.8944 -1.0900 31 1 3.5065 -10.3660 -0.9646 32 1 2.8238 -9.5642 -2.3996 33 1 3.9895 -11.5872 -2.9805 34 1 4.8067 -10.2821 -3.6085 35 1 2.7197 -6.4506 -2.1299 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085586293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 21.594816 kcal Electronic energy + Delta-G solvation = -14295.462456 eV Core-core repulsion = 11907.171290 eV Total energy + Delta-G solvation = -2388.291166 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.90712 -35.85927 -34.64960 -32.74922 -31.00593 -29.38943 -27.51736 -25.93286 -23.32642 -22.13088 -20.56997 -19.84038 -19.21078 -16.95489 -16.16099 -15.71823 -14.92529 -14.60062 -14.34879 -14.29608 -13.81161 -13.29212 -12.87293 -12.46765 -12.21067 -11.93094 -11.79871 -11.56924 -11.37078 -10.92152 -10.86633 -10.83613 -10.60373 -9.90467 -9.60086 -9.22884 -8.86759 -8.44429 -8.12449 -7.79767 -6.08999 -4.11885 2.60244 3.19928 3.26262 3.33705 3.35487 3.39591 4.39748 4.49216 5.04657 5.19762 5.27570 5.29571 5.34156 5.47255 5.54058 5.63591 5.72678 5.82845 5.85200 6.05999 6.17751 6.34890 6.46565 6.59698 6.73418 6.89116 6.96102 7.22601 7.30420 7.53113 7.56016 7.65194 7.73188 7.89219 8.31266 8.94623 9.53065 11.02293 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.055079 B = 0.004163 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.239428 B = 6724.273659 C = 6828.791816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.123 4.123 11 C 0.100 3.900 12 N -0.436 5.436 13 C -0.012 4.012 14 C -0.204 4.204 15 C -0.179 4.179 16 C -0.038 4.038 17 C 0.067 3.933 18 N -0.855 5.855 19 C -0.009 4.009 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.129 0.871 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.338 0.662 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -16.302 -2.591 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.021 4.021 12 N -0.109 5.109 13 C -0.143 4.143 14 C -0.228 4.228 15 C -0.186 4.186 16 C -0.076 4.076 17 C -0.064 4.064 18 N -0.384 5.384 19 C -0.141 4.141 20 H 0.071 0.929 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.849 -15.913 -1.971 16.751 hybrid contribution -0.445 1.220 -0.637 1.447 sum 4.404 -14.692 -2.608 15.558 Atomic orbital electron populations 1.69962 1.06075 1.26679 1.50721 1.25025 0.94878 0.99379 0.95144 0.86510 0.80150 0.83574 0.77656 1.19677 1.20920 1.20922 1.21231 0.93120 0.90841 1.50817 0.92562 1.19061 0.93793 0.91115 0.97441 1.22038 0.99687 0.92848 1.01518 1.22223 0.90826 0.85381 1.03685 1.44394 1.34504 1.26299 1.05732 1.21802 1.02157 0.98585 0.91801 1.20675 1.05085 1.02700 0.94358 1.19239 1.04111 1.01211 0.94020 1.19792 0.97312 0.92780 0.97766 1.21820 0.94228 0.93401 0.96942 1.58771 1.47112 1.10072 1.22487 1.21588 1.02111 0.98666 0.91686 0.92939 0.96373 0.96346 0.92661 0.92613 0.89700 0.89778 0.82605 0.85325 0.92276 0.91025 0.91083 0.95723 0.84998 0.84995 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.46 5.48 -26.73 -0.15 -2.61 16 11 C 0.10 1.63 6.09 -4.04 -0.02 1.60 16 12 N -0.44 -6.88 2.75 -117.13 -0.32 -7.20 16 13 C -0.01 -0.18 11.43 -16.75 -0.19 -0.38 16 14 C -0.20 -2.93 10.81 -39.78 -0.43 -3.36 16 15 C -0.18 -2.53 5.39 -104.82 -0.57 -3.09 16 16 C -0.04 -0.45 5.98 -27.88 -0.17 -0.61 16 17 C 0.07 0.70 6.77 -3.82 -0.03 0.67 16 18 N -0.86 -7.64 9.62 -10.37 -0.10 -7.74 16 19 C -0.01 -0.13 11.35 -16.75 -0.19 -0.32 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.34 2.43 9.08 -39.29 -0.36 2.08 16 34 H 0.34 2.60 8.99 -39.29 -0.35 2.25 16 35 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 299.06 15.07 4.51 4.51 Total: -1.00 -30.24 299.06 -8.24 -38.48 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.75 Total: 2.26 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.29 Total: -21.04 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.31 Total: -40.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.24 -8.24 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.072 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds