Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36343 * 125.63153 * 90.02303 * 12 11 10 14 14 C 1.34856 * 108.21378 * 180.02562 * 13 12 11 15 15 C 1.40890 * 107.41842 * 0.02562 * 14 13 12 16 16 C 1.50700 * 126.29136 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47174 * 90.02245 * 16 15 14 18 18 N 1.46902 * 109.47298 * 180.02562 * 17 16 15 19 19 C 1.34850 * 107.41639 * 359.73547 * 15 14 13 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 26 26 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 27 27 H 1.07993 * 125.89755 * 359.97438 * 13 12 11 28 28 H 1.08004 * 126.28890 * 180.02562 * 14 13 12 29 29 H 1.08991 * 109.47308 * 210.02110 * 16 15 14 30 30 H 1.09004 * 109.46862 * 330.02754 * 16 15 14 31 31 H 1.09004 * 109.47182 * 300.00070 * 17 16 15 32 32 H 1.09002 * 109.47386 * 59.99999 * 17 16 15 33 33 H 1.00899 * 111.00175 * 180.02562 * 18 17 16 34 34 H 1.00902 * 110.99864 * 303.95952 * 18 17 16 35 35 H 1.08000 * 125.89321 * 180.25904 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 2.9483 -6.7042 1.1107 14 6 3.7849 -7.6819 0.7074 15 6 3.7860 -7.6815 -0.7015 16 6 4.5759 -8.6046 -1.5932 17 6 3.7463 -9.8539 -1.8965 18 7 4.5164 -10.7541 -2.7652 19 6 2.9455 -6.7074 -1.1055 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8541 -5.0447 0.8922 26 1 0.8534 -5.0451 -0.8877 27 1 2.7260 -6.4438 2.1350 28 1 4.3503 -8.3437 1.3469 29 1 4.8156 -8.0926 -2.5250 30 1 5.4984 -8.8944 -1.0900 31 1 3.5065 -10.3660 -0.9646 32 1 2.8238 -9.5642 -2.3996 33 1 3.9895 -11.5872 -2.9805 34 1 4.8067 -10.2821 -3.6085 35 1 2.7197 -6.4506 -2.1299 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 3.748802 kcal Electronic energy + Delta-G solvation = -14296.236317 eV Core-core repulsion = 11907.171290 eV Total energy + Delta-G solvation = -2389.065027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05021 -36.96865 -36.11460 -34.50744 -32.40416 -30.62094 -28.84221 -27.41328 -24.96280 -23.09843 -22.28865 -21.03188 -20.29472 -18.67319 -17.68736 -16.64530 -16.50470 -16.01552 -15.66915 -15.46487 -14.87941 -14.60888 -14.32334 -13.91588 -13.60508 -13.36742 -13.19632 -12.83345 -12.70682 -12.53857 -12.49068 -12.34649 -11.80229 -11.66643 -11.54050 -11.27340 -10.60176 -9.59761 -9.30389 -8.92560 -8.24863 -6.35778 1.37627 1.38402 1.44099 1.51507 2.10221 2.15509 2.38692 3.08776 3.75123 3.86023 4.14614 4.18425 4.24825 4.38516 4.42988 4.49431 4.55269 4.64393 4.77187 4.89247 4.92259 5.07317 5.11688 5.28039 5.35304 5.44818 5.60631 5.67275 5.78269 6.18296 6.18705 6.26075 6.43629 6.56931 6.64804 6.80024 7.33796 8.86664 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.055079 B = 0.004163 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.239428 B = 6724.273659 C = 6828.791816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.105 4.105 11 C 0.112 3.888 12 N -0.446 5.446 13 C -0.026 4.026 14 C -0.211 4.211 15 C -0.179 4.179 16 C -0.034 4.034 17 C 0.074 3.926 18 N -0.859 5.859 19 C -0.028 4.028 20 H 0.265 0.735 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.171 0.829 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.349 0.651 34 H 0.346 0.654 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -16.781 -2.818 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.144 4.144 11 C -0.010 4.010 12 N -0.120 5.120 13 C -0.156 4.156 14 C -0.235 4.235 15 C -0.187 4.187 16 C -0.073 4.073 17 C -0.057 4.057 18 N -0.390 5.390 19 C -0.158 4.158 20 H 0.074 0.926 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.189 0.811 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.808 -16.420 -2.206 17.556 hybrid contribution -0.720 1.312 -0.569 1.601 sum 5.087 -15.108 -2.775 16.181 Atomic orbital electron populations 1.70069 1.07605 1.27845 1.51458 1.25920 0.95785 1.03198 0.94623 0.85432 0.78970 0.78927 0.77939 1.18951 1.20196 1.20222 1.21664 0.93383 0.92489 1.50854 0.92706 1.18931 0.94151 0.92257 0.95647 1.21743 0.98508 0.93267 1.00860 1.21954 0.90474 0.83850 1.04686 1.44353 1.34945 1.26336 1.06337 1.22202 1.02267 0.98778 0.92396 1.20983 1.04973 1.02758 0.94833 1.19566 1.03642 1.01072 0.94385 1.19789 0.96979 0.92939 0.97556 1.21654 0.94039 0.92985 0.96975 1.58727 1.47037 1.10320 1.22888 1.21943 1.02577 0.99116 0.92167 0.92619 0.98105 0.98066 0.93273 0.93175 0.88736 0.88889 0.81124 0.83788 0.91601 0.91251 0.91793 0.95858 0.83789 0.84105 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.11 -4.22 5.48 30.59 0.17 -4.05 16 11 C 0.11 3.56 6.09 86.38 0.53 4.09 16 12 N -0.45 -13.56 2.75 -524.49 -1.44 -15.00 16 13 C -0.03 -0.75 11.43 83.21 0.95 0.21 16 14 C -0.21 -5.74 10.81 22.14 0.24 -5.50 16 15 C -0.18 -4.82 5.39 -19.99 -0.11 -4.92 16 16 C -0.03 -0.75 5.98 29.85 0.18 -0.57 16 17 C 0.07 1.43 6.77 86.30 0.58 2.02 16 18 N -0.86 -13.71 9.62 -186.71 -1.80 -15.51 16 19 C -0.03 -0.79 11.35 83.21 0.94 0.15 16 20 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 21 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 22 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 28 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.02 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.35 4.36 9.08 -89.69 -0.81 3.55 16 34 H 0.35 4.64 8.99 -89.69 -0.81 3.84 16 35 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -63.27 299.06 2.84 -60.43 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.56 Total: 16.18 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 4.33 Total: -36.93 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.95 Total: -85.60 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.27 2.84 -60.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.179 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds