Wall clock time and date at job start Mon Mar 30 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99837 * 2 1 4 4 C 1.50697 * 109.46967 * 269.99729 * 3 2 1 5 5 H 1.07993 * 120.00644 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99854 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99849 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99908 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46951 * 90.00313 * 8 6 4 10 10 H 1.48499 * 109.47061 * 210.00349 * 8 6 4 11 11 H 1.48500 * 109.47137 * 329.99721 * 8 6 4 12 12 C 1.39312 * 120.00258 * 180.02562 * 2 1 3 13 13 C 1.38855 * 119.59761 * 185.28068 * 12 2 1 14 14 C 1.38628 * 119.31068 * 180.25575 * 13 12 2 15 15 C 1.38960 * 118.52376 * 359.46701 * 14 13 12 16 16 N 1.40369 * 120.43164 * 180.25431 * 15 14 13 17 17 C 1.39493 * 119.13475 * 0.28386 * 15 14 13 18 18 N 1.39290 * 119.69016 * 179.97438 * 17 15 14 19 19 N 1.32399 * 120.61419 * 359.97265 * 17 15 14 20 20 H 1.08996 * 109.47500 * 269.99982 * 1 2 3 21 21 H 1.09005 * 109.47260 * 30.00067 * 1 2 3 22 22 H 1.08995 * 109.47257 * 149.99841 * 1 2 3 23 23 H 1.09000 * 109.47343 * 30.00076 * 3 2 1 24 24 H 1.09001 * 109.46950 * 150.00310 * 3 2 1 25 25 H 0.97004 * 119.99233 * 179.97438 * 7 6 4 26 26 H 1.08002 * 120.34331 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.74178 * 179.75182 * 14 13 12 28 28 H 0.96997 * 119.99825 * 0.02562 * 16 15 14 29 29 H 0.96996 * 119.99680 * 180.02562 * 16 15 14 30 30 H 0.97003 * 120.00098 * 359.97438 * 18 17 15 31 31 H 0.96995 * 120.00112 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3456 3.2574 -2.9127 8 14 3.7350 3.9281 -0.2529 9 1 5.1083 3.5059 0.1225 10 1 3.7508 5.3549 -0.6642 11 1 2.8292 3.7587 0.9116 12 6 2.1616 -1.2064 -0.0005 13 6 3.5456 -1.1992 0.1106 14 6 4.2333 -2.4029 0.1040 15 6 3.5059 -3.5821 -0.0031 16 7 4.1609 -4.8236 -0.0083 17 6 2.1163 -3.5159 -0.1059 18 7 1.3758 -4.6907 -0.2144 19 7 1.4948 -2.3469 -0.1014 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5138 23 1 1.6084 2.0285 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8225 4.0833 -3.0899 26 1 4.0812 -0.2654 0.1974 27 1 5.3100 -2.4241 0.1851 28 1 5.1275 -4.8622 0.0635 29 1 3.6470 -5.6427 -0.0838 30 1 1.8267 -5.5496 -0.2185 31 1 0.4094 -4.6499 -0.2866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086829585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:42 Heat of formation + Delta-G solvation = 35.833063 kcal Electronic energy + Delta-G solvation = -14930.253592 eV Core-core repulsion = 12439.039500 eV Total energy + Delta-G solvation = -2491.214093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.09332 -38.05285 -35.34768 -34.92944 -34.32826 -31.68690 -30.07959 -28.96498 -26.23486 -24.32279 -23.51774 -21.77513 -19.04110 -18.88154 -18.31308 -17.28294 -16.67292 -16.51672 -16.17459 -15.85349 -15.44575 -14.82533 -14.47090 -14.20974 -13.92323 -13.51301 -13.14194 -13.05767 -12.53232 -12.29126 -12.21679 -11.87496 -11.71260 -11.55628 -10.78054 -10.29840 -9.65903 -9.14314 -8.28501 -7.29209 -6.34205 0.73525 0.93342 1.39622 1.41085 1.52067 2.31486 2.36040 2.89058 3.05306 3.25003 3.29426 3.96216 4.35465 4.45191 4.67729 4.68497 4.75197 4.90269 4.97782 5.04385 5.20109 5.45004 5.50463 5.69478 6.03338 6.31304 6.42976 6.67859 6.76016 6.92021 6.97756 7.22551 7.30247 7.66166 8.89036 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.037648 B = 0.007731 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.555185 B = 3621.067993 C = 3972.180608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.614 5.614 3 C 0.238 3.762 4 C -0.537 4.537 5 H 0.021 0.979 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.241 1.241 12 C 0.387 3.613 13 C -0.266 4.266 14 C -0.081 4.081 15 C 0.039 3.961 16 N -0.871 5.871 17 C 0.375 3.625 18 N -0.843 5.843 19 N -0.588 5.588 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.268 0.732 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.404 0.596 29 H 0.398 0.602 30 H 0.413 0.587 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -14.763 9.379 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.327 5.327 3 C 0.115 3.885 4 C -0.576 4.576 5 H 0.039 0.961 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.771 3.229 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.164 1.164 12 C 0.153 3.847 13 C -0.293 4.293 14 C -0.112 4.112 15 C -0.069 4.069 16 N -0.420 5.420 17 C 0.132 3.868 18 N -0.393 5.393 19 N -0.316 5.316 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.167 0.833 28 H 0.233 0.767 29 H 0.227 0.773 30 H 0.245 0.755 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.825 -14.310 9.222 17.044 hybrid contribution 1.040 0.229 -0.225 1.088 sum 0.215 -14.080 8.997 16.711 Atomic orbital electron populations 1.21352 0.79526 1.01695 1.00543 1.46414 1.05588 1.02408 1.78318 1.19393 0.92786 0.81441 0.94854 1.21676 1.36481 1.06800 0.92648 0.96104 1.25893 0.95402 0.98686 0.98639 1.70083 1.42804 1.24418 1.21552 0.85698 0.80030 0.77575 0.79603 1.18677 1.20695 1.16400 1.17929 0.88591 0.85070 0.93080 1.21095 0.93145 0.99362 1.15738 1.20737 1.00182 0.89655 1.00630 1.17790 0.90187 0.88554 1.10341 1.41797 1.09188 1.02638 1.88407 1.17785 0.87067 0.86688 0.95213 1.41832 1.09520 1.03501 1.84397 1.66288 1.40383 0.96755 1.28147 0.92943 0.92765 0.91755 0.94142 0.94457 0.92335 0.86438 0.83346 0.76655 0.77287 0.75473 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.38 10.50 127.77 1.34 5.72 16 2 N -0.61 -27.98 2.98 -733.11 -2.19 -30.16 16 3 C 0.24 11.58 4.08 85.63 0.35 11.93 16 4 C -0.54 -31.63 9.94 25.60 0.25 -31.37 16 5 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 6 C 0.01 0.67 5.47 84.66 0.46 1.13 16 7 N -0.95 -59.77 13.96 21.45 0.30 -59.48 16 8 Si 0.95 42.96 27.47 68.60 1.88 44.84 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 12 C 0.39 17.02 7.37 132.86 0.98 18.00 16 13 C -0.27 -11.04 9.27 22.51 0.21 -10.83 16 14 C -0.08 -2.72 10.03 22.54 0.23 -2.49 16 15 C 0.04 1.15 6.81 38.25 0.26 1.41 16 16 N -0.87 -16.55 9.11 -50.55 -0.46 -17.02 16 17 C 0.37 12.08 7.77 133.05 1.03 13.11 16 18 N -0.84 -18.43 9.07 -55.02 -0.50 -18.93 16 19 N -0.59 -23.24 9.10 -189.95 -1.73 -24.97 16 20 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 21 H 0.05 2.13 8.07 -2.38 -0.02 2.11 16 22 H 0.06 2.47 7.30 -2.39 -0.02 2.45 16 23 H 0.04 1.88 7.13 -2.39 -0.02 1.86 16 24 H 0.04 1.76 5.39 -2.39 -0.01 1.75 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.12 5.13 6.00 -2.91 -0.02 5.11 16 27 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.40 6.18 8.86 -92.71 -0.82 5.36 16 29 H 0.40 5.49 7.01 -92.71 -0.65 4.84 16 30 H 0.41 6.06 6.98 -92.71 -0.65 5.42 16 31 H 0.41 8.26 8.95 -92.71 -0.83 7.43 16 Total: -1.00 -73.09 261.95 0.62 -72.47 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -1.81 Total: 26.62 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.12 Total: 6.62 kcal Atomic # 7 Polarization: -145.97 SS G_CDS: -4.57 Total: -150.55 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -73.09 0.62 -72.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086829585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.305 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds