Wall clock time and date at job start Mon Mar 30 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47312 * 2 1 4 4 C 1.50707 * 109.47393 * 240.00403 * 2 1 3 5 5 H 1.07994 * 120.00036 * 245.36893 * 4 2 1 6 6 C 1.37881 * 119.99638 * 65.36924 * 4 2 1 7 7 N 1.31509 * 120.00296 * 5.18187 * 6 4 2 8 8 Si 1.86801 * 119.99521 * 185.18572 * 6 4 2 9 9 H 1.48491 * 109.47348 * 94.99819 * 8 6 4 10 10 H 1.48504 * 109.46792 * 215.00137 * 8 6 4 11 11 H 1.48499 * 109.47257 * 334.99407 * 8 6 4 12 12 N 1.46497 * 109.47200 * 120.00302 * 2 1 3 13 13 C 1.46498 * 120.00233 * 64.96012 * 12 2 1 14 14 C 1.38632 * 119.99945 * 244.95571 * 12 2 1 15 15 C 1.39167 * 120.48426 * 0.18818 * 14 12 2 16 16 C 1.39131 * 118.27036 * 180.27405 * 15 14 12 17 17 N 1.38632 * 120.48692 * 179.97438 * 16 15 14 18 18 N 1.33199 * 119.02552 * 359.97438 * 16 15 14 19 19 C 1.31728 * 120.88447 * 0.02562 * 18 16 15 20 20 N 1.31753 * 121.90961 * 359.97438 * 19 18 16 21 21 H 1.09001 * 109.47390 * 294.94060 * 1 2 3 22 22 H 1.09002 * 109.47486 * 54.93977 * 1 2 3 23 23 H 1.09000 * 109.47110 * 174.93776 * 1 2 3 24 24 H 0.97005 * 120.00092 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.46772 * 270.00231 * 13 12 2 26 26 H 1.08997 * 109.46965 * 29.99481 * 13 12 2 27 27 H 1.08995 * 109.47300 * 150.00111 * 13 12 2 28 28 H 1.07998 * 120.86901 * 0.24297 * 15 14 12 29 29 H 0.96999 * 119.99865 * 180.02562 * 17 16 15 30 30 H 0.96995 * 120.00071 * 0.02562 * 17 16 15 31 31 H 1.07999 * 119.04486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5799 -1.6362 -1.1339 6 6 1.7930 -0.1781 -2.4798 7 7 1.2167 0.9985 -2.5939 8 14 2.2872 -1.1285 -4.0101 9 1 1.1236 -1.9052 -4.5078 10 1 2.7337 -0.1781 -5.0602 11 1 3.3974 -2.0574 -3.6790 12 7 2.0183 -0.6907 1.1961 13 6 1.7562 -2.1209 1.3744 14 6 2.7285 0.0092 2.1592 15 6 2.9799 1.3689 2.0019 16 6 3.7021 2.0246 2.9941 17 7 3.9792 3.3785 2.8839 18 7 4.1233 1.3324 4.0512 19 6 3.8649 0.0457 4.1636 20 7 3.1844 -0.6107 3.2460 21 1 -0.3634 0.4333 0.9318 22 1 -0.3634 0.5903 -0.8412 23 1 -0.3633 -1.0237 -0.0907 24 1 1.0479 1.3727 -3.4727 25 1 0.8134 -2.2541 1.9049 26 1 1.6955 -2.6035 0.3990 27 1 2.5646 -2.5692 1.9520 28 1 2.6242 1.9013 1.1322 29 1 4.4836 3.8284 3.5796 30 1 3.6687 3.8758 2.1112 31 1 4.2211 -0.4867 5.0332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087829219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:06 Heat of formation + Delta-G solvation = 38.303774 kcal Electronic energy + Delta-G solvation = -15135.664273 eV Core-core repulsion = 12644.557318 eV Total energy + Delta-G solvation = -2491.106955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.57793 -38.49589 -36.23582 -34.86999 -32.79055 -31.15774 -30.95075 -27.28389 -27.13011 -25.10887 -23.52166 -21.65053 -19.00098 -18.72170 -18.27435 -16.94777 -16.71190 -16.18638 -15.95337 -15.63919 -15.03831 -14.87950 -14.67455 -14.15415 -13.61407 -13.04822 -12.92820 -12.72925 -12.67275 -12.50689 -12.28976 -12.12251 -11.50798 -11.23913 -10.95659 -10.51385 -9.99718 -9.27850 -8.56836 -8.15224 -6.31096 0.49111 0.81653 1.40822 1.43073 1.52151 2.20539 2.44032 2.65317 3.11007 3.24454 3.63776 3.96271 4.30971 4.54787 4.61249 4.74377 4.76389 4.82584 4.94170 5.02973 5.04739 5.36383 5.51695 5.61507 5.70179 5.95723 6.11313 6.30636 6.50027 6.76501 6.78182 7.06238 7.38346 7.65839 8.86935 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.008299 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.850099 B = 3373.072987 C = 3713.529167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.269 3.731 3 H 0.038 0.962 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.584 5.584 13 C 0.106 3.894 14 C 0.446 3.554 15 C -0.387 4.387 16 C 0.456 3.544 17 N -0.825 5.825 18 N -0.634 5.634 19 C 0.364 3.636 20 N -0.631 5.631 21 H 0.026 0.974 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.413 0.587 30 H 0.417 0.583 31 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 0.971 8.292 8.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.168 3.832 3 H 0.055 0.945 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.292 5.292 13 C -0.037 4.037 14 C 0.205 3.795 15 C -0.421 4.421 16 C 0.213 3.787 17 N -0.370 5.370 18 N -0.365 5.365 19 C 0.073 3.927 20 N -0.361 5.361 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.143 0.857 29 H 0.245 0.755 30 H 0.249 0.751 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.887 0.517 8.681 9.164 hybrid contribution -0.167 0.510 -1.849 1.925 sum 2.720 1.027 6.832 7.425 Atomic orbital electron populations 1.21867 0.97626 1.00179 0.99116 1.18779 0.91152 0.92902 0.80407 0.94474 1.21546 1.36300 1.08868 0.91317 0.92585 1.25574 0.94968 0.95509 1.01511 1.70011 1.43307 1.16939 1.24804 0.85560 0.78555 0.78517 0.79114 1.19789 1.20859 1.19823 1.47043 1.53777 1.09400 1.18968 1.21450 1.00514 0.80334 1.01386 1.18566 0.85774 0.88222 0.86898 1.21344 1.18841 0.96006 1.05938 1.18272 0.85873 0.86839 0.87720 1.42024 1.61995 1.04620 1.28336 1.67991 1.32407 1.10687 1.25453 1.24992 0.86465 0.86144 0.95115 1.67997 1.22274 1.40809 1.05045 0.95542 0.92221 0.94132 0.92481 0.93417 0.91584 0.91009 0.85706 0.75540 0.75137 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.98 71.98 0.65 -5.32 16 2 C 0.27 13.21 2.44 44.25 0.11 13.31 16 3 H 0.04 1.99 5.33 -2.38 -0.01 1.98 16 4 C -0.54 -28.54 8.00 25.60 0.20 -28.33 16 5 H 0.06 2.97 6.79 -2.91 -0.02 2.95 16 6 C 0.02 1.31 5.29 84.66 0.45 1.76 16 7 N -0.91 -49.59 11.99 21.45 0.26 -49.34 16 8 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.58 -25.83 2.86 -708.55 -2.03 -27.86 16 13 C 0.11 4.08 9.75 127.77 1.25 5.32 16 14 C 0.45 18.99 7.39 132.97 0.98 19.97 16 15 C -0.39 -15.72 9.25 22.71 0.21 -15.51 16 16 C 0.46 15.65 7.81 132.95 1.04 16.68 16 17 N -0.83 -20.59 9.06 -55.23 -0.50 -21.09 16 18 N -0.63 -21.07 10.47 -197.84 -2.07 -23.14 16 19 C 0.36 11.65 12.28 180.92 2.22 13.87 16 20 N -0.63 -23.97 9.25 -197.83 -1.83 -25.80 16 21 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 2.97 6.84 -2.39 -0.02 2.95 16 23 H 0.04 1.78 7.95 -2.39 -0.02 1.76 16 24 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 2.59 6.55 -2.39 -0.02 2.58 16 27 H 0.07 2.61 7.39 -2.39 -0.02 2.59 16 28 H 0.13 5.39 5.84 -2.91 -0.02 5.37 16 29 H 0.41 8.24 8.95 -92.71 -0.83 7.41 16 30 H 0.42 9.10 8.84 -92.71 -0.82 8.28 16 31 H 0.23 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -60.95 262.81 2.48 -58.47 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.48 Total: 23.01 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 7.11 Total: 21.76 kcal Atomic # 7 Polarization: -141.05 SS G_CDS: -6.17 Total: -147.22 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -60.95 2.48 -58.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087829219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.771 kcal (2) G-P(sol) polarization free energy of solvation -60.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds