Wall clock time and date at job start Mon Mar 30 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30841 * 125.90094 * 2 1 4 4 N 1.40082 * 108.20933 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03893 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92609 * 359.75644 * 4 3 2 7 7 C 1.50695 * 126.13082 * 180.23882 * 6 4 3 8 8 C 1.35320 * 107.74406 * 0.39077 * 6 4 3 9 9 C 1.50700 * 126.04036 * 179.87399 * 8 6 4 10 10 H 1.09000 * 109.46955 * 5.52882 * 9 8 6 11 11 C 1.53004 * 109.47231 * 125.53461 * 9 8 6 12 12 C 1.53004 * 109.47132 * 245.53232 * 9 8 6 13 13 C 1.50696 * 109.46893 * 174.17893 * 12 9 8 14 14 H 1.07994 * 120.00544 * 359.97438 * 13 12 9 15 15 C 1.37887 * 119.99533 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99648 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00124 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47521 * 89.99804 * 17 15 13 19 19 H 1.48502 * 109.46931 * 209.99889 * 17 15 13 20 20 H 1.48503 * 109.47044 * 329.99708 * 17 15 13 21 21 H 1.09003 * 109.47476 * 274.94566 * 1 2 3 22 22 H 1.08997 * 109.47096 * 34.94482 * 1 2 3 23 23 H 1.09004 * 109.47152 * 154.94557 * 1 2 3 24 24 H 1.09000 * 109.46937 * 89.97609 * 5 4 3 25 25 H 1.08997 * 109.47065 * 209.97923 * 5 4 3 26 26 H 1.09002 * 109.46897 * 329.97687 * 5 4 3 27 27 H 1.09007 * 109.47272 * 270.17954 * 7 6 4 28 28 H 1.09002 * 109.46896 * 30.17710 * 7 6 4 29 29 H 1.09001 * 109.47259 * 150.18121 * 7 6 4 30 30 H 1.08998 * 109.47047 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46798 * 299.99831 * 11 9 8 32 32 H 1.08998 * 109.47109 * 59.99787 * 11 9 8 33 33 H 1.09004 * 109.46797 * 54.17727 * 12 9 8 34 34 H 1.08998 * 109.46824 * 294.17928 * 12 9 8 35 35 H 0.97002 * 119.99525 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6143 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0142 8 6 2.3272 -1.1330 0.0006 9 6 1.8600 -2.5658 0.0013 10 1 2.7193 -3.2281 0.1063 11 6 0.8986 -2.7882 1.1707 12 6 1.1407 -2.8683 -1.3148 13 6 0.7997 -4.3349 -1.3752 14 1 1.0694 -4.9862 -0.5571 15 6 0.1433 -4.8453 -2.4752 16 7 -0.1538 -6.1254 -2.5281 17 14 -0.3225 -3.7190 -3.8906 18 1 0.7851 -3.6819 -4.8790 19 1 -1.5535 -4.2301 -4.5455 20 1 -0.5697 -2.3493 -3.3726 21 1 -0.3634 0.0886 1.0238 22 1 -0.3633 0.8424 -0.5886 23 1 -0.3634 -0.9310 -0.4352 24 1 5.0823 1.7168 1.0279 25 1 5.6095 0.9977 -0.5127 26 1 4.5565 2.4328 -0.5146 27 1 5.1346 -1.8137 -1.0117 28 1 5.6485 -1.0899 0.5312 29 1 4.6050 -2.5320 0.5284 30 1 0.5611 -3.8246 1.1714 31 1 1.4111 -2.5727 2.1083 32 1 0.0394 -2.1259 1.0657 33 1 1.7906 -2.6115 -2.1513 34 1 0.2251 -2.2797 -1.3720 35 1 -0.6159 -6.4843 -3.3018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107550502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:40 Heat of formation + Delta-G solvation = 55.367534 kcal Electronic energy + Delta-G solvation = -15498.109266 eV Core-core repulsion = 13111.282595 eV Total energy + Delta-G solvation = -2386.826671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02424 -35.56767 -33.52757 -32.29417 -30.89959 -29.13896 -27.52663 -26.35648 -25.26371 -23.01983 -20.41178 -19.12146 -18.60049 -16.72570 -15.77818 -15.44622 -14.43049 -13.87227 -13.67129 -13.33507 -13.10212 -13.02701 -12.67141 -12.48448 -12.30327 -12.01918 -12.00657 -11.60490 -11.47604 -10.97642 -10.93181 -10.67841 -10.16755 -9.87147 -9.62076 -9.47084 -8.93833 -8.67046 -8.45500 -7.68301 -5.97624 -3.93670 2.19910 2.80534 3.21580 3.35828 3.43420 3.48935 4.51980 4.68500 4.95809 5.15290 5.23368 5.33255 5.36753 5.39814 5.66240 5.72341 5.89634 5.95566 5.99467 6.02108 6.23790 6.27603 6.43696 6.55318 6.64437 6.92445 7.00943 7.10885 7.20950 7.41498 7.43477 7.61707 7.89320 8.14081 8.62172 9.08447 9.66280 11.15761 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.008225 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.208563 B = 3403.525434 C = 3505.676804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.085 3.915 3 N -0.311 5.311 4 N -0.386 5.386 5 C 0.108 3.892 6 C 0.067 3.933 7 C -0.087 4.087 8 C -0.204 4.204 9 C -0.004 4.004 10 H 0.065 0.935 11 C -0.134 4.134 12 C -0.004 4.004 13 C -0.512 4.512 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.264 1.264 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.008 0.992 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 12.342 5.506 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 N -0.134 5.134 4 N -0.169 5.169 5 C -0.034 4.034 6 C -0.058 4.058 7 C -0.146 4.146 8 C -0.215 4.215 9 C -0.023 4.023 10 H 0.084 0.916 11 C -0.192 4.192 12 C -0.041 4.041 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.546 5.546 17 Si 0.702 3.298 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.189 1.189 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.225 13.583 5.393 16.770 hybrid contribution -0.124 -0.238 -0.916 0.954 sum 8.101 13.345 4.477 16.241 Atomic orbital electron populations 1.20423 0.87128 1.03975 1.02394 1.22141 0.96702 0.90328 0.98901 1.77174 0.86256 1.22793 1.27153 1.48141 1.05179 1.04065 1.59556 1.21662 0.84370 0.94806 1.02547 1.20811 0.97119 0.84189 1.03687 1.20399 0.92560 0.98448 1.03150 1.20189 0.90634 0.97444 1.13210 1.19452 0.97938 0.87773 0.97178 0.91632 1.21800 0.98810 1.02568 0.95981 1.19641 0.95149 0.97206 0.92096 1.21180 1.36744 0.92241 1.04809 0.90799 1.24996 0.95544 0.94745 0.98142 1.69916 1.41954 1.12388 1.30294 0.86861 0.78027 0.81951 0.82983 1.20546 1.21535 1.18872 0.90959 0.91688 0.88845 0.91521 0.90018 0.89844 0.90455 0.91935 0.89368 0.91447 0.95021 0.93075 0.97417 0.96220 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 8.80 36.00 0.32 -1.01 16 2 C 0.09 1.59 7.05 -82.40 -0.58 1.01 16 3 N -0.31 -5.72 12.58 33.67 0.42 -5.30 16 4 N -0.39 -6.14 4.01 -63.89 -0.26 -6.40 16 5 C 0.11 1.12 11.09 59.85 0.66 1.79 16 6 C 0.07 1.11 6.93 -82.26 -0.57 0.54 16 7 C -0.09 -1.11 9.57 36.00 0.34 -0.76 16 8 C -0.20 -3.87 4.81 -105.05 -0.50 -4.37 16 9 C 0.00 -0.08 2.44 -91.77 -0.22 -0.30 16 10 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 11 C -0.13 -2.55 8.79 37.16 0.33 -2.22 16 12 C 0.00 -0.09 3.36 -27.88 -0.09 -0.18 16 13 C -0.51 -14.31 8.97 -34.44 -0.31 -14.62 16 14 H 0.07 2.20 7.36 -52.49 -0.39 1.81 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 17 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.09 1.66 4.58 -51.93 -0.24 1.42 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 29 H 0.09 1.13 7.07 -51.93 -0.37 0.76 16 30 H 0.07 1.38 7.01 -51.93 -0.36 1.01 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.92 5.45 -51.93 -0.28 0.64 16 33 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 34 H 0.02 0.47 4.83 -51.93 -0.25 0.22 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 279.17 15.07 4.21 4.21 Total: -1.00 -32.93 279.17 -5.38 -38.32 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.13 Total: -2.80 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -0.73 Total: -18.30 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.94 Total: -38.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.93 -5.38 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107550502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.683 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds