Wall clock time and date at job start Mon Mar 30 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30841 * 125.90094 * 2 1 4 4 N 1.40082 * 108.20933 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03893 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92609 * 359.75644 * 4 3 2 7 7 C 1.50695 * 126.13082 * 180.23882 * 6 4 3 8 8 C 1.35320 * 107.74406 * 0.39077 * 6 4 3 9 9 C 1.50700 * 126.04036 * 179.87399 * 8 6 4 10 10 H 1.09000 * 109.46955 * 5.52882 * 9 8 6 11 11 C 1.53004 * 109.47231 * 125.53461 * 9 8 6 12 12 C 1.53004 * 109.47132 * 245.53232 * 9 8 6 13 13 C 1.50696 * 109.46893 * 174.17893 * 12 9 8 14 14 H 1.07994 * 120.00544 * 359.97438 * 13 12 9 15 15 C 1.37887 * 119.99533 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99648 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00124 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47521 * 89.99804 * 17 15 13 19 19 H 1.48502 * 109.46931 * 209.99889 * 17 15 13 20 20 H 1.48503 * 109.47044 * 329.99708 * 17 15 13 21 21 H 1.09003 * 109.47476 * 274.94566 * 1 2 3 22 22 H 1.08997 * 109.47096 * 34.94482 * 1 2 3 23 23 H 1.09004 * 109.47152 * 154.94557 * 1 2 3 24 24 H 1.09000 * 109.46937 * 89.97609 * 5 4 3 25 25 H 1.08997 * 109.47065 * 209.97923 * 5 4 3 26 26 H 1.09002 * 109.46897 * 329.97687 * 5 4 3 27 27 H 1.09007 * 109.47272 * 270.17954 * 7 6 4 28 28 H 1.09002 * 109.46896 * 30.17710 * 7 6 4 29 29 H 1.09001 * 109.47259 * 150.18121 * 7 6 4 30 30 H 1.08998 * 109.47047 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46798 * 299.99831 * 11 9 8 32 32 H 1.08998 * 109.47109 * 59.99787 * 11 9 8 33 33 H 1.09004 * 109.46797 * 54.17727 * 12 9 8 34 34 H 1.08998 * 109.46824 * 294.17928 * 12 9 8 35 35 H 0.97002 * 119.99525 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6143 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0142 8 6 2.3272 -1.1330 0.0006 9 6 1.8600 -2.5658 0.0013 10 1 2.7193 -3.2281 0.1063 11 6 0.8986 -2.7882 1.1707 12 6 1.1407 -2.8683 -1.3148 13 6 0.7997 -4.3349 -1.3752 14 1 1.0694 -4.9862 -0.5571 15 6 0.1433 -4.8453 -2.4752 16 7 -0.1538 -6.1254 -2.5281 17 14 -0.3225 -3.7190 -3.8906 18 1 0.7851 -3.6819 -4.8790 19 1 -1.5535 -4.2301 -4.5455 20 1 -0.5697 -2.3493 -3.3726 21 1 -0.3634 0.0886 1.0238 22 1 -0.3633 0.8424 -0.5886 23 1 -0.3634 -0.9310 -0.4352 24 1 5.0823 1.7168 1.0279 25 1 5.6095 0.9977 -0.5127 26 1 4.5565 2.4328 -0.5146 27 1 5.1346 -1.8137 -1.0117 28 1 5.6485 -1.0899 0.5312 29 1 4.6050 -2.5320 0.5284 30 1 0.5611 -3.8246 1.1714 31 1 1.4111 -2.5727 2.1083 32 1 0.0394 -2.1259 1.0657 33 1 1.7906 -2.6115 -2.1513 34 1 0.2251 -2.2797 -1.3720 35 1 -0.6159 -6.4843 -3.3018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107550502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:40 Heat of formation + Delta-G solvation = 34.529462 kcal Electronic energy + Delta-G solvation = -15499.012873 eV Core-core repulsion = 13111.282595 eV Total energy + Delta-G solvation = -2387.730278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.30092 -37.17313 -34.89103 -34.22202 -32.20581 -30.34657 -29.37954 -27.61935 -26.41733 -24.84248 -22.02985 -20.36710 -20.03933 -18.84309 -16.99320 -16.62487 -16.29077 -15.54235 -15.12862 -14.65788 -14.45324 -14.32874 -14.04572 -13.79924 -13.50215 -13.48886 -13.32544 -12.90471 -12.84348 -12.74512 -12.57790 -12.22219 -11.79958 -11.76454 -11.37725 -11.31873 -10.81400 -10.67020 -9.89602 -9.03541 -8.22179 -6.22401 0.94414 1.35840 1.38077 1.50123 1.72845 1.84419 2.40032 3.13427 3.63044 3.82613 4.15439 4.33069 4.41035 4.43668 4.47335 4.55499 4.63495 4.67778 4.74447 4.79634 4.86295 4.99945 5.04227 5.12345 5.25271 5.30201 5.42244 5.47305 5.57874 5.68522 5.79076 5.95920 6.26819 6.39511 6.83990 6.84933 7.40814 8.94243 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.008225 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.208563 B = 3403.525434 C = 3505.676804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 N -0.334 5.334 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.076 3.924 7 C -0.087 4.087 8 C -0.242 4.242 9 C 0.006 3.994 10 H 0.060 0.940 11 C -0.129 4.129 12 C 0.004 3.996 13 C -0.511 4.511 14 H 0.042 0.958 15 C 0.008 3.992 16 N -0.951 5.951 17 Si 0.936 3.064 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.250 1.250 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.000 1.000 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 14.522 5.466 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 N -0.157 5.157 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.051 4.051 7 C -0.145 4.145 8 C -0.252 4.252 9 C -0.014 4.014 10 H 0.079 0.921 11 C -0.186 4.186 12 C -0.034 4.034 13 C -0.550 4.550 14 H 0.060 0.940 15 C -0.188 4.188 16 N -0.593 5.593 17 Si 0.761 3.239 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.174 1.174 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.592 15.797 5.364 19.244 hybrid contribution -0.430 -0.909 -0.828 1.303 sum 9.162 14.888 4.536 18.060 Atomic orbital electron populations 1.20417 0.86374 1.03396 1.03569 1.22401 0.97575 0.90367 0.99158 1.77108 0.87560 1.23010 1.28052 1.48573 1.05613 1.04479 1.57822 1.22127 0.83132 0.94718 1.04489 1.21301 0.97586 0.84989 1.01271 1.20533 0.92042 0.97919 1.04051 1.20079 0.92116 0.96379 1.16671 1.19204 0.97507 0.89267 0.95414 0.92133 1.21724 0.99131 1.01078 0.96643 1.19543 0.95458 0.94274 0.94100 1.21464 1.35827 0.94049 1.03615 0.93979 1.25838 0.95805 0.96114 1.01051 1.70055 1.43428 1.14362 1.31415 0.85863 0.77914 0.80488 0.79653 1.19896 1.20998 1.17415 0.89231 0.90623 0.90568 0.89444 0.87255 0.89128 0.89746 0.88392 0.89814 0.93919 0.93003 0.92327 0.98196 0.96010 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.51 8.80 71.23 0.63 -1.88 16 2 C 0.07 2.51 7.05 43.10 0.30 2.82 16 3 N -0.33 -11.63 12.58 -47.38 -0.60 -12.23 16 4 N -0.38 -11.06 4.01 -356.03 -1.43 -12.49 16 5 C 0.10 1.61 11.09 127.77 1.42 3.02 16 6 C 0.08 2.33 6.93 41.40 0.29 2.62 16 7 C -0.09 -1.95 9.57 71.23 0.68 -1.27 16 8 C -0.24 -8.85 4.81 -20.14 -0.10 -8.94 16 9 C 0.01 0.23 2.44 -11.54 -0.03 0.20 16 10 H 0.06 2.46 6.75 -2.39 -0.02 2.44 16 11 C -0.13 -4.87 8.79 71.98 0.63 -4.24 16 12 C 0.00 0.17 3.36 29.85 0.10 0.27 16 13 C -0.51 -29.25 8.97 25.60 0.23 -29.02 16 14 H 0.04 2.61 7.36 -2.91 -0.02 2.59 16 15 C 0.01 0.48 5.47 84.66 0.46 0.95 16 16 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 17 Si 0.94 45.47 27.47 68.60 1.88 47.35 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 21 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.65 4.58 -2.38 -0.01 2.64 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.11 1.26 7.67 -2.39 -0.02 1.24 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.10 1.48 7.74 -2.39 -0.02 1.46 16 29 H 0.08 1.97 7.07 -2.39 -0.02 1.95 16 30 H 0.04 1.79 7.01 -2.39 -0.02 1.77 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 2.09 5.45 -2.39 -0.01 2.08 16 33 H 0.00 -0.02 7.57 -2.39 -0.02 -0.03 16 34 H 0.02 1.04 4.83 -2.39 -0.01 1.03 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -71.43 279.17 5.79 -65.64 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.02 Total: 6.70 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 4.62 Total: -35.47 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.73 Total: -84.22 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Total: -71.43 5.79 -65.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107550502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.167 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds