Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47298 * 2 1 4 4 C 1.50708 * 109.46984 * 120.00206 * 2 1 3 5 5 H 1.07994 * 119.99835 * 120.00192 * 4 2 1 6 6 C 1.37873 * 119.99553 * 299.99801 * 4 2 1 7 7 N 1.31511 * 120.00514 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99771 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47053 * 89.99967 * 8 6 4 10 10 H 1.48499 * 109.47226 * 209.99709 * 8 6 4 11 11 H 1.48495 * 109.47065 * 330.00212 * 8 6 4 12 12 N 1.46499 * 109.47097 * 239.99589 * 2 1 3 13 13 C 1.46496 * 120.00353 * 301.77763 * 12 2 1 14 14 C 1.39359 * 119.99856 * 121.77455 * 12 2 1 15 15 C 1.39581 * 120.07660 * 10.96798 * 14 12 2 16 16 C 1.38355 * 117.96650 * 179.97438 * 15 14 12 17 17 C 1.39584 * 117.96510 * 0.02562 * 16 15 14 18 18 N 1.39355 * 120.07421 * 180.02562 * 17 16 15 19 19 N 1.32275 * 119.84897 * 359.97438 * 17 16 15 20 20 N 1.28350 * 122.18679 * 359.73937 * 19 17 16 21 21 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47294 * 300.00154 * 1 2 3 23 23 H 1.08999 * 109.46963 * 60.00242 * 1 2 3 24 24 H 0.97001 * 120.00320 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47336 * 269.99588 * 13 12 2 26 26 H 1.09001 * 109.47596 * 29.99481 * 13 12 2 27 27 H 1.08996 * 109.47625 * 149.99890 * 13 12 2 28 28 H 1.08002 * 121.01770 * 359.95943 * 15 14 12 29 29 H 1.08004 * 121.02177 * 179.97438 * 16 15 14 30 30 H 0.96996 * 120.00647 * 359.97438 * 18 17 16 31 31 H 0.97006 * 119.99704 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6326 -2.0814 -1.4478 14 6 2.8497 -0.0247 -2.0946 15 6 3.4033 1.2100 -1.7522 16 6 4.2229 1.8325 -2.6768 17 6 4.4443 1.1870 -3.8945 18 7 5.2628 1.7742 -4.8574 19 7 3.8764 0.0162 -4.1318 20 7 3.1204 -0.5639 -3.2719 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7087 1.1612 3.4844 25 1 2.3606 -2.7494 -0.9874 26 1 0.6473 -2.2682 -1.0207 27 1 1.6029 -2.2615 -2.5223 28 1 3.1979 1.6657 -0.7948 29 1 4.6767 2.7890 -2.4635 30 1 5.6790 2.6326 -4.6822 31 1 5.4162 1.3244 -5.7031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159928204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = 54.030193 kcal Electronic energy + Delta-G solvation = -15046.831706 eV Core-core repulsion = 12556.406700 eV Total energy + Delta-G solvation = -2490.425006 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.67500 -38.46729 -35.93094 -34.71155 -33.45762 -31.56639 -29.79991 -27.54593 -27.16587 -24.71527 -24.10098 -21.60763 -18.92289 -18.43461 -18.21367 -17.79148 -16.63481 -16.32723 -16.07060 -15.39066 -15.01741 -14.67990 -14.23358 -14.13094 -13.46849 -13.02833 -12.89151 -12.67761 -12.49083 -12.46496 -12.26279 -12.04454 -12.02393 -11.29736 -10.97656 -10.52820 -10.25160 -9.75766 -8.23336 -7.89732 -6.28091 0.07082 0.66103 1.42144 1.44875 1.53783 2.21997 2.46286 2.82409 2.94772 3.14055 3.74608 3.92950 3.96536 4.25984 4.49240 4.75727 4.77847 4.87631 4.94468 4.98609 5.07161 5.13084 5.25673 5.43201 5.65553 5.87677 6.16626 6.40022 6.46607 6.78488 6.83862 7.04181 7.42856 8.23449 8.89358 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.007456 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.846389 B = 3754.500998 C = 3955.438944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.035 0.965 4 C -0.538 4.538 5 H 0.049 0.951 6 C 0.026 3.974 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.597 5.597 13 C 0.113 3.887 14 C 0.295 3.705 15 C -0.149 4.149 16 C -0.123 4.123 17 C 0.279 3.721 18 N -0.835 5.835 19 N -0.310 5.310 20 N -0.317 5.317 21 H 0.037 0.963 22 H 0.075 0.925 23 H 0.022 0.978 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.420 0.580 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 3.541 -8.323 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.173 3.827 3 H 0.053 0.947 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.174 4.174 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.030 4.030 14 C 0.050 3.950 15 C -0.182 4.182 16 C -0.155 4.155 17 C 0.031 3.969 18 N -0.386 5.386 19 N -0.158 5.158 20 N -0.166 5.166 21 H 0.056 0.944 22 H 0.093 0.907 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.198 0.802 30 H 0.252 0.748 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.212 2.267 -9.055 10.691 hybrid contribution 0.512 0.850 1.779 2.037 sum 5.724 3.117 -7.276 9.768 Atomic orbital electron populations 1.21969 0.97710 0.99863 1.00200 1.18705 0.91252 0.92291 0.80419 0.94694 1.21581 1.31699 1.13051 0.91366 0.93276 1.25523 0.94983 0.95614 1.01284 1.69950 1.36931 1.23608 1.24512 0.85608 0.78112 0.78951 0.79261 1.20328 1.20566 1.19895 1.46782 1.49701 1.12540 1.22222 1.21312 0.99548 0.81513 1.00645 1.20225 0.92664 0.91732 0.90365 1.22057 0.98645 0.95564 1.01938 1.21957 0.99255 1.02370 0.91925 1.20001 0.94284 0.92022 0.90639 1.41730 1.53592 1.25607 1.17708 1.72428 1.09814 1.08962 1.24559 1.72562 1.15405 1.28688 0.99960 0.94442 0.90672 0.95853 0.92463 0.94919 0.91504 0.91259 0.83621 0.80221 0.74764 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.47 8.92 71.98 0.64 -5.83 16 2 C 0.28 13.35 2.54 44.25 0.11 13.46 16 3 H 0.04 1.78 5.47 -2.39 -0.01 1.77 16 4 C -0.54 -28.28 8.39 25.60 0.21 -28.07 16 5 H 0.05 2.65 7.70 -2.91 -0.02 2.63 16 6 C 0.03 1.37 5.30 84.65 0.45 1.81 16 7 N -0.91 -48.76 11.32 21.45 0.24 -48.52 16 8 Si 0.95 41.88 29.54 68.60 2.03 43.90 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.60 -26.66 2.88 -708.17 -2.04 -28.69 16 13 C 0.11 4.56 9.88 127.77 1.26 5.82 16 14 C 0.30 12.57 7.42 133.09 0.99 13.56 16 15 C -0.15 -5.56 9.34 22.62 0.21 -5.35 16 16 C -0.12 -3.55 10.05 22.62 0.23 -3.32 16 17 C 0.28 8.36 7.86 133.09 1.05 9.40 16 18 N -0.83 -15.90 9.10 -54.99 -0.50 -16.40 16 19 N -0.31 -11.70 11.52 -54.95 -0.63 -12.33 16 20 N -0.32 -13.39 10.25 -54.95 -0.56 -13.95 16 21 H 0.04 1.67 6.60 -2.39 -0.02 1.65 16 22 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 2.59 6.33 -2.39 -0.02 2.57 16 27 H 0.07 2.64 7.27 -2.39 -0.02 2.62 16 28 H 0.15 5.61 6.02 -2.91 -0.02 5.59 16 29 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.42 5.03 8.84 -92.71 -0.82 4.21 16 31 H 0.41 6.93 8.96 -92.70 -0.83 6.10 16 Total: -1.00 -62.03 261.55 3.21 -58.82 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.48 Total: 15.67 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.15 Total: 1.50 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -3.49 Total: -119.90 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -62.03 3.21 -58.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159928204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.854 kcal (2) G-P(sol) polarization free energy of solvation -62.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds