Wall clock time and date at job start Mon Mar 30 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46906 * 109.46922 * 2 1 4 4 C 1.52992 * 109.47378 * 239.99587 * 2 1 3 5 5 C 1.53006 * 109.47056 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46924 * 60.00339 * 5 4 2 7 7 C 1.53008 * 109.47007 * 299.99946 * 6 5 4 8 8 C 1.47193 * 109.46872 * 300.00117 * 7 6 5 9 9 N 3.61163 * 143.65813 * 35.71519 * 2 1 3 10 10 C 1.52998 * 109.47007 * 179.97438 * 7 6 5 11 11 C 1.50706 * 109.47348 * 59.99952 * 10 7 6 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 7 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46683 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47426 * 119.99743 * 15 13 11 18 18 H 1.48501 * 109.46833 * 239.99986 * 15 13 11 19 19 C 1.52996 * 109.47234 * 60.00239 * 7 6 5 20 20 H 1.08994 * 109.47559 * 300.00257 * 1 2 3 21 21 H 1.09005 * 109.46827 * 60.00583 * 1 2 3 22 22 H 1.08996 * 109.46626 * 179.97438 * 1 2 3 23 23 H 1.00894 * 110.99494 * 299.99785 * 3 2 1 24 24 H 1.00902 * 110.99436 * 63.94879 * 3 2 1 25 25 H 1.08996 * 109.47595 * 299.99839 * 4 2 1 26 26 H 1.09005 * 109.47280 * 60.00108 * 4 2 1 27 27 H 1.09002 * 109.47088 * 179.97438 * 5 4 2 28 28 H 1.08996 * 109.46952 * 300.00435 * 5 4 2 29 29 H 1.09002 * 109.47205 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47429 * 59.99651 * 6 5 4 31 31 H 1.09001 * 109.47671 * 300.00161 * 10 7 6 32 32 H 1.08998 * 109.47454 * 180.02562 * 10 7 6 33 33 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47441 * 59.99719 * 19 7 6 35 35 H 1.08994 * 109.47235 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5702 -0.7207 -1.2494 6 6 4.0806 -1.4415 -0.0001 7 6 3.5705 -0.7202 1.2492 8 6 4.0606 0.6677 1.2488 9 7 4.4392 1.7377 1.2494 10 6 4.0804 -1.4414 2.4984 11 6 5.5874 -1.4415 2.4986 12 1 6.1274 -0.9742 1.6884 13 6 6.2767 -2.0335 3.5355 14 7 5.6191 -2.5977 4.5248 15 14 8.1447 -2.0329 3.5361 16 1 8.6398 -1.3388 2.3202 17 1 8.6392 -1.3271 4.7454 18 1 8.6401 -3.4328 3.5426 19 6 2.0405 -0.7208 1.2494 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6962 1.8828 -0.8158 24 1 1.7501 1.8638 0.8463 25 1 1.6769 -1.7489 -1.2491 26 1 1.6768 -0.2075 -2.1392 27 1 3.9336 -1.2350 -2.1391 28 1 3.9331 0.3071 -1.2496 29 1 5.1706 -1.4415 -0.0004 30 1 3.7176 -2.4694 0.0002 31 1 3.7171 -2.4691 2.4985 32 1 3.7166 -0.9279 3.3884 33 1 6.1040 -3.0139 5.2546 34 1 1.6775 -1.7486 1.2496 35 1 1.6771 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238485019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:38 Heat of formation + Delta-G solvation = 1.422668 kcal Electronic energy + Delta-G solvation = -15892.418072 eV Core-core repulsion = 13503.252176 eV Total energy + Delta-G solvation = -2389.165896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62241 -35.42176 -33.93193 -32.61255 -31.22466 -29.11200 -27.24773 -26.06544 -23.41017 -21.67225 -20.99466 -19.12380 -16.60841 -15.80926 -15.18857 -14.95687 -14.48460 -13.95627 -13.64520 -13.24784 -12.68872 -12.60297 -12.25560 -12.24421 -11.95464 -11.64279 -11.39272 -11.24196 -10.95981 -10.82405 -10.76292 -10.61362 -10.39004 -10.25319 -10.01127 -9.78306 -9.09085 -8.99011 -8.37543 -8.29416 -6.01704 -4.02981 3.32838 3.40993 3.46296 4.08940 4.27340 4.47161 4.64764 4.86746 5.00916 5.12942 5.29608 5.36806 5.50240 5.57064 5.72731 5.85162 5.89483 5.95308 5.98637 6.06730 6.22528 6.26170 6.39222 6.47255 6.66638 6.85305 6.89916 7.02651 7.40157 7.54928 7.63553 7.65129 7.95172 8.34582 8.96725 9.04139 9.61495 11.09407 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.040972 B = 0.008283 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.236144 B = 3379.417919 C = 3447.878949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 N -0.828 5.828 4 C -0.100 4.100 5 C -0.119 4.119 6 C -0.096 4.096 7 C 0.048 3.952 8 C 0.277 3.723 9 N -0.486 5.486 10 C 0.032 3.968 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.095 4.095 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.333 0.667 24 H 0.339 0.661 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 1.264 -9.707 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.017 3.983 3 N -0.358 5.358 4 C -0.138 4.138 5 C -0.157 4.157 6 C -0.134 4.134 7 C 0.044 3.956 8 C -0.040 4.040 9 N -0.163 5.163 10 C -0.006 4.006 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.134 4.134 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.146 0.854 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.668 2.473 -9.572 13.148 hybrid contribution -0.194 -0.201 0.223 0.358 sum -8.862 2.272 -9.349 13.080 Atomic orbital electron populations 1.22614 0.97508 1.02390 1.01184 1.20921 0.91113 0.89677 0.96578 1.59009 1.66916 1.02662 1.07219 1.21518 0.96866 0.99602 0.95796 1.21563 0.94610 1.01689 0.97829 1.21512 1.02082 0.98324 0.91505 1.18343 0.92765 0.84647 0.99807 1.28232 0.91141 0.93686 0.90940 1.80809 1.11421 1.13216 1.10811 1.19242 0.96340 0.95421 0.89551 1.21209 0.91268 1.36007 1.06904 0.92349 1.24952 0.98277 0.95391 0.95485 1.69956 1.35292 1.37718 1.10337 0.86591 0.86104 0.77629 0.78112 1.19693 1.21081 1.20965 1.21722 0.94826 1.00782 0.96102 0.92844 0.93108 0.92016 0.85418 0.84760 0.91673 0.92925 0.92887 0.91139 0.90381 0.91224 0.94794 0.95963 0.93034 0.90159 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.76 37.16 0.33 -1.52 16 2 C 0.11 1.39 0.82 -131.59 -0.11 1.28 16 3 N -0.83 -11.21 5.08 0.75 0.00 -11.20 16 4 C -0.10 -1.23 4.89 -26.73 -0.13 -1.36 16 5 C -0.12 -1.75 5.59 -26.73 -0.15 -1.90 16 6 C -0.10 -1.66 4.45 -26.73 -0.12 -1.78 16 7 C 0.05 0.91 0.49 -157.30 -0.08 0.84 16 8 C 0.28 5.86 8.88 -20.79 -0.18 5.68 16 9 N -0.49 -11.01 18.08 42.12 0.76 -10.25 16 10 C 0.03 0.77 4.02 -27.88 -0.11 0.66 16 11 C -0.52 -13.91 7.80 -34.44 -0.27 -14.18 16 12 H 0.06 1.59 6.39 -52.49 -0.34 1.25 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.10 -1.46 3.79 -26.73 -0.10 -1.56 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.33 3.89 9.00 -39.29 -0.35 3.54 16 24 H 0.34 4.71 8.80 -39.29 -0.35 4.36 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.17 6.70 -51.93 -0.35 0.83 16 29 H 0.08 1.53 6.62 -51.93 -0.34 1.18 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 277.61 15.07 4.18 4.18 Total: -1.00 -29.76 277.61 -5.87 -35.63 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.51 Total: 2.44 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.02 Total: -12.25 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 1.50 Total: -46.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.76 -5.87 -35.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238485019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.054 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds