Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.46917 * 2 1 4 4 C 1.52995 * 109.47050 * 120.00322 * 2 1 3 5 5 C 1.52995 * 109.47669 * 60.00076 * 4 2 1 6 6 C 1.53001 * 109.47009 * 59.99741 * 5 4 2 7 7 C 1.53000 * 109.47266 * 300.00088 * 6 5 4 8 8 C 1.47196 * 109.47452 * 300.00111 * 7 6 5 9 9 N 3.61168 * 43.77172 * 210.00070 * 2 1 3 10 10 C 1.53001 * 109.47266 * 179.97438 * 7 6 5 11 11 C 1.50695 * 109.47169 * 60.00010 * 10 7 6 12 12 H 1.08005 * 120.00014 * 0.02562 * 11 10 7 13 13 C 1.37870 * 120.00280 * 179.97438 * 11 10 7 14 14 N 1.31523 * 119.99903 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00428 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47267 * 90.00157 * 15 13 11 17 17 H 1.48498 * 109.47752 * 210.00227 * 15 13 11 18 18 H 1.48499 * 109.47060 * 330.00305 * 15 13 11 19 19 C 1.53001 * 109.47066 * 240.00236 * 2 1 3 20 20 H 1.09002 * 109.47065 * 199.07918 * 1 2 3 21 21 H 1.08997 * 109.47364 * 319.07636 * 1 2 3 22 22 H 1.08994 * 109.47152 * 79.08393 * 1 2 3 23 23 H 1.00901 * 111.00114 * 60.00170 * 3 2 1 24 24 H 1.00904 * 111.00238 * 183.95852 * 3 2 1 25 25 H 1.08998 * 109.46944 * 299.99690 * 4 2 1 26 26 H 1.09002 * 109.46778 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.46748 * 300.00326 * 5 4 2 28 28 H 1.08996 * 109.47352 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.47107 * 60.00164 * 6 5 4 30 30 H 1.08995 * 109.47338 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47382 * 180.02562 * 10 7 6 32 32 H 1.09002 * 109.47107 * 300.00076 * 10 7 6 33 33 H 0.97001 * 119.99831 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.47107 * 179.97438 * 19 2 1 35 35 H 1.09000 * 109.47084 * 59.99420 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5300 -2.1638 -1.2493 8 6 0.0581 -2.1638 -1.2493 9 7 -1.0779 -2.1638 -1.2493 10 6 2.0406 -2.8846 -2.4986 11 6 1.5388 -4.3056 -2.4989 12 1 0.9176 -4.6591 -1.6893 13 6 1.8720 -5.1541 -3.5333 14 7 2.6281 -4.7235 -4.5195 15 14 1.2495 -6.9152 -3.5341 16 1 -0.0587 -6.9776 -4.2343 17 1 2.2277 -7.7858 -4.2344 18 1 1.0844 -7.3825 -2.1342 19 6 2.0401 -0.7212 -1.2493 20 1 -0.3633 -0.9712 0.3359 21 1 -0.3634 0.7765 0.6731 22 1 -0.3633 0.1946 -1.0090 23 1 1.6961 1.8829 0.8158 24 1 3.0262 1.4127 -0.0650 25 1 1.6767 -0.2075 2.1391 26 1 3.1300 -0.7209 1.2494 27 1 0.4401 -2.1638 1.2492 28 1 1.8931 -2.6775 2.1394 29 1 3.1301 -2.8849 -0.0001 30 1 1.6765 -3.9125 -0.0003 31 1 1.6775 -2.3705 -3.3886 32 1 3.1306 -2.8842 -2.4984 33 1 2.8628 -5.3205 -5.2471 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238498333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = -6.297970 kcal Electronic energy + Delta-G solvation = -15928.086157 eV Core-core repulsion = 13538.585469 eV Total energy + Delta-G solvation = -2389.500688 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38465 -37.09642 -35.99578 -34.40735 -32.82402 -30.13274 -28.80032 -27.55469 -25.25290 -23.26356 -22.76370 -20.18630 -18.43285 -17.34397 -17.16013 -16.48859 -15.87262 -15.73612 -14.94337 -14.75529 -14.55912 -14.37508 -13.98557 -13.76878 -13.41923 -13.28161 -13.03490 -12.64259 -12.59590 -12.51784 -12.16462 -12.15404 -11.90203 -11.74758 -11.68702 -11.28164 -10.98816 -10.72335 -10.54466 -9.44741 -8.18658 -6.25989 1.37993 1.40506 1.49245 2.00378 2.04648 2.40709 3.15364 3.21328 3.52782 3.78533 3.89733 4.11671 4.19635 4.29140 4.41380 4.48517 4.66425 4.73080 4.88064 4.89909 5.03388 5.11565 5.16537 5.20422 5.29173 5.37377 5.45032 5.47058 5.54515 5.63635 5.81288 6.21021 6.37383 6.77372 6.80367 6.88523 7.41745 8.92445 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.008297 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.498208 B = 3373.705056 C = 3447.023218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 N -0.842 5.842 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.096 4.096 7 C 0.043 3.957 8 C 0.270 3.730 9 N -0.512 5.512 10 C 0.042 3.958 11 C -0.528 4.528 12 H 0.055 0.945 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.945 3.055 16 H -0.286 1.286 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.090 4.090 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.032 0.968 23 H 0.349 0.651 24 H 0.351 0.649 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.059 0.941 31 H -0.007 1.007 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 8.390 12.502 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 N -0.373 5.373 4 C -0.174 4.174 5 C -0.160 4.160 6 C -0.134 4.134 7 C 0.039 3.961 8 C -0.045 4.045 9 N -0.190 5.190 10 C 0.003 3.997 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.770 3.230 16 H -0.212 1.212 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.129 4.129 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.163 0.837 24 H 0.165 0.835 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.012 0.988 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.287 8.439 11.665 14.455 hybrid contribution 0.290 -1.405 0.078 1.437 sum 1.578 7.034 11.743 13.779 Atomic orbital electron populations 1.22362 0.95816 1.02002 1.00900 1.20646 0.93800 0.88520 0.94087 1.58800 1.17077 1.12775 1.48657 1.22304 1.01973 0.95358 0.97799 1.21667 0.99884 0.96372 0.98035 1.21552 1.02141 0.98708 0.91037 1.18631 0.80258 0.97607 0.99605 1.29235 0.95435 0.89692 0.90125 1.81024 1.14209 1.12172 1.11550 1.19056 0.96784 0.93555 0.90258 1.21484 1.31021 0.97284 1.06819 0.92732 1.25700 0.95410 1.02316 0.95370 1.70043 1.37890 1.37284 1.11177 0.85752 0.77861 0.80708 0.78634 1.21238 1.20286 1.18758 1.21635 1.02152 0.91157 0.97918 0.92056 0.91701 0.94889 0.83689 0.83469 0.90545 0.89702 0.93708 0.89591 0.88838 0.92273 0.98822 0.94794 0.92790 0.88497 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 7.02 71.98 0.50 -4.01 16 2 C 0.12 3.00 0.97 3.53 0.00 3.00 16 3 N -0.84 -16.65 8.88 -151.57 -1.35 -17.99 16 4 C -0.14 -2.72 5.02 30.59 0.15 -2.56 16 5 C -0.12 -3.02 5.58 30.59 0.17 -2.85 16 6 C -0.10 -3.02 4.45 30.59 0.14 -2.89 16 7 C 0.04 1.60 0.49 -53.99 -0.03 1.57 16 8 C 0.27 11.30 8.16 89.44 0.73 12.03 16 9 N -0.51 -22.97 16.97 20.00 0.34 -22.63 16 10 C 0.04 1.98 4.02 29.85 0.12 2.10 16 11 C -0.53 -28.15 7.80 25.60 0.20 -27.95 16 12 H 0.05 2.89 6.39 -2.91 -0.02 2.87 16 13 C 0.01 0.59 5.46 84.65 0.46 1.06 16 14 N -0.92 -53.66 13.29 21.45 0.28 -53.37 16 15 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.09 -2.71 3.91 30.60 0.12 -2.59 16 20 H 0.06 1.99 3.24 -2.39 -0.01 1.99 16 21 H 0.06 1.64 8.04 -2.39 -0.02 1.63 16 22 H 0.03 1.13 7.16 -2.39 -0.02 1.12 16 23 H 0.35 5.55 8.92 -89.69 -0.80 4.75 16 24 H 0.35 5.65 8.98 -89.69 -0.81 4.85 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.28 5.56 -2.39 -0.01 1.26 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 31 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 Total: -1.00 -63.08 271.21 3.38 -59.71 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -0.50 Total: 11.51 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 2.57 Total: -23.09 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -0.72 Total: -94.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -63.08 3.38 -59.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.410 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds