Wall clock time and date at job start Mon Mar 30 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50693 * 109.47326 * 2 1 4 4 N 1.31916 * 120.53127 * 270.02089 * 3 2 1 5 5 C 1.32815 * 121.23103 * 179.97438 * 4 3 2 6 6 N 1.37971 * 118.85656 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00492 * 179.97438 * 6 5 4 8 8 N 1.32607 * 122.29406 * 0.02562 * 5 4 3 9 9 C 1.32583 * 120.88978 * 359.70017 * 8 5 4 10 10 N 1.37825 * 120.66145 * 180.28631 * 9 8 5 11 11 C 1.40918 * 120.52916 * 89.99890 * 3 2 1 12 12 C 1.40988 * 121.01866 * 0.02562 * 11 3 2 13 13 H 1.07999 * 119.99827 * 317.80162 * 12 11 3 14 14 C 1.39868 * 120.00048 * 137.80212 * 12 11 3 15 15 N 1.30948 * 119.99921 * 337.13144 * 14 12 11 16 16 Si 1.86798 * 120.00022 * 156.85953 * 14 12 11 17 17 H 1.48502 * 109.47157 * 180.27352 * 16 14 12 18 18 H 1.48508 * 109.47080 * 300.27380 * 16 14 12 19 19 H 1.48497 * 109.47102 * 60.27493 * 16 14 12 20 20 H 1.09000 * 109.47638 * 300.00019 * 1 2 3 21 21 H 1.09004 * 109.47389 * 60.00162 * 1 2 3 22 22 H 1.09010 * 109.47302 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47423 * 239.99514 * 2 1 3 24 24 H 1.09007 * 109.47172 * 120.00301 * 2 1 3 25 25 H 0.97001 * 119.99625 * 0.02562 * 6 5 4 26 26 H 1.09001 * 109.47229 * 60.00304 * 7 6 5 27 27 H 1.09001 * 109.47602 * 180.02562 * 7 6 5 28 28 H 1.09003 * 109.47053 * 300.00331 * 7 6 5 29 29 H 0.97006 * 119.99879 * 170.77030 * 10 9 8 30 30 H 0.96994 * 120.00228 * 350.77647 * 10 9 8 31 31 H 0.97003 * 120.00293 * 352.79407 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2553 2.0527 -1.1363 5 6 2.6975 3.3049 -1.1525 6 7 2.9137 3.9191 -2.3689 7 6 3.4007 5.2999 -2.4162 8 7 2.9386 3.9856 -0.0403 9 6 2.7393 3.4371 1.1502 10 7 2.9859 4.1508 2.3031 11 6 2.2709 2.0956 1.2138 12 6 2.0475 1.4622 2.4534 13 1 1.1666 0.8544 2.5982 14 6 2.9666 1.6209 3.4956 15 7 4.2057 1.9517 3.2311 16 14 2.4248 1.3685 5.2654 17 1 3.5764 1.6009 6.1737 18 1 1.3366 2.3252 5.5911 19 1 1.9304 -0.0210 5.4383 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.7424 3.4367 -3.1929 26 1 4.3665 5.3619 -1.9147 27 1 3.5097 5.6115 -3.4550 28 1 2.6879 5.9540 -1.9139 29 1 2.7127 3.7934 3.1626 30 1 3.4324 5.0105 2.2552 31 1 4.5133 1.9846 2.3117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259970188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:02 Heat of formation + Delta-G solvation = 36.410425 kcal Electronic energy + Delta-G solvation = -15413.286025 eV Core-core repulsion = 12922.096968 eV Total energy + Delta-G solvation = -2491.189057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38679 -35.82765 -34.58032 -33.39138 -31.71462 -29.97701 -28.81903 -26.16222 -24.00032 -23.33154 -21.38470 -19.95811 -17.98525 -17.17327 -16.55896 -14.78822 -14.24322 -14.19450 -14.08292 -13.81839 -13.53216 -13.13013 -12.80133 -12.58252 -11.94377 -11.71420 -11.49678 -11.07209 -10.63806 -10.49251 -10.45164 -10.34141 -10.15453 -9.32911 -8.92955 -8.66126 -7.71166 -7.65152 -7.12252 -6.51572 -4.17268 2.71208 2.94401 3.20492 3.25494 3.38593 4.00318 4.09780 4.72605 4.91135 5.50072 5.57150 5.72264 5.93677 6.07915 6.15941 6.22589 6.27014 6.37122 6.59880 6.61823 6.86054 7.00791 7.26119 7.45429 7.86804 7.98908 8.06666 8.08636 8.46707 8.66067 8.83711 8.95108 9.22880 9.93609 10.26835 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.011224 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.666260 B = 2493.950568 C = 3262.947939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 C 0.106 3.894 4 N -0.586 5.586 5 C 0.502 3.498 6 N -0.727 5.727 7 C 0.125 3.875 8 N -0.615 5.615 9 C 0.402 3.598 10 N -0.830 5.830 11 C -0.072 4.072 12 C -0.531 4.531 13 H 0.072 0.928 14 C 0.024 3.976 15 N -0.815 5.815 16 Si 1.057 2.943 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.401 0.599 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.411 0.589 30 H 0.382 0.618 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 1.740 -2.671 4.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 C -0.036 4.036 4 N -0.311 5.311 5 C 0.146 3.854 6 N -0.369 5.369 7 C -0.021 4.021 8 N -0.348 5.348 9 C 0.152 3.848 10 N -0.376 5.376 11 C -0.084 4.084 12 C -0.564 4.564 13 H 0.090 0.910 14 C -0.193 4.193 15 N -0.441 5.441 16 Si 0.881 3.119 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.235 0.765 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.245 0.755 30 H 0.209 0.791 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.860 2.380 -1.916 3.577 hybrid contribution -0.539 -0.348 -0.845 1.061 sum -2.399 2.032 -2.761 4.184 Atomic orbital electron populations 1.21627 0.96111 1.00125 1.01517 1.19984 0.94780 0.91914 1.01551 1.21011 1.01011 0.94859 0.86725 1.67025 1.23039 1.09051 1.32004 1.18270 0.95699 0.86416 0.85043 1.43123 1.76209 1.13906 1.03697 1.21095 0.98780 0.82632 0.99568 1.66749 1.30830 1.39923 0.97312 1.18642 0.93132 0.87912 0.85063 1.41886 1.66607 1.22923 1.06233 1.18343 1.03561 0.91234 0.95241 1.19742 1.09199 1.31229 0.96234 0.90991 1.26693 0.93144 0.93598 1.05850 1.70498 1.15105 1.33113 1.25408 0.83743 0.76308 0.77784 0.74020 1.20211 1.20427 1.20369 0.92692 0.93535 0.93571 0.92562 0.90340 0.76500 0.93770 0.92471 0.93812 0.75537 0.79073 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 37.15 0.37 -2.15 16 2 C -0.04 -0.93 5.82 -27.89 -0.16 -1.10 16 3 C 0.11 2.64 6.15 -81.55 -0.50 2.14 16 4 N -0.59 -14.46 10.35 -9.68 -0.10 -14.56 16 5 C 0.50 12.06 8.41 -322.88 -2.71 9.34 16 6 N -0.73 -13.99 5.84 -69.14 -0.40 -14.39 16 7 C 0.13 1.98 10.64 59.84 0.64 2.62 16 8 N -0.62 -15.24 9.55 -12.74 -0.12 -15.36 16 9 C 0.40 10.18 6.93 -154.80 -1.07 9.10 16 10 N -0.83 -18.69 7.82 31.56 0.25 -18.45 16 11 C -0.07 -1.88 4.88 -106.31 -0.52 -2.40 16 12 C -0.53 -13.46 7.40 -37.93 -0.28 -13.74 16 13 H 0.07 1.80 7.44 -52.49 -0.39 1.41 16 14 C 0.02 0.58 3.31 -17.32 -0.06 0.52 16 15 N -0.82 -21.16 12.10 55.55 0.67 -20.49 16 16 Si 1.06 21.01 29.98 -169.99 -5.10 15.92 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H 0.05 1.07 7.83 -51.93 -0.41 0.66 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.08 1.70 7.17 -51.92 -0.37 1.33 16 25 H 0.40 6.83 8.94 -40.82 -0.36 6.47 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.41 9.28 6.07 -40.82 -0.25 9.03 16 30 H 0.38 7.71 8.95 -40.82 -0.37 7.35 16 31 H 0.29 8.04 7.28 -40.82 -0.30 7.74 16 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -28.85 262.93 -8.92 -37.77 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -3.78 Total: 21.28 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -4.30 Total: 4.33 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: 0.29 Total: -83.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.10 Total: 15.92 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.85 -8.92 -37.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.180 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds